mRNA_H-paniculata_contig13329.2083.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 199 bits (507), Expect = 9.070e-58 Identity = 113/283 (39.93%), Postives = 168/283 (59.36%), Query Frame = 1 Query: 4 WIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRD-VPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKV-----KISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAVHEAAVV 831 W+ K ++G + R KAR +A+ +SQ G D+ T APVA ++T+R + ++A D E + M VD AYL + ++++++VK PP + + V RLRKSLYGLKQSGR W+ +D + G G + S+ D CLYV GE L++ +YVDDL+IAG R+ VD+F IS+ + M DL L ++G+ ++RN + ISQ +YI +L ++ +C+ V TP+EG + + +PDR EY +VGSL YA TRPDIA AV V+ Sbjct: 22 WVETDKRDQNGIIVRRKARFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEGILTKMNGEGDKPDR-------EYMKLVGSLLYAALVTRPDIAFAVQSVLVM 296
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A284QR55_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284QR55_ARMOS) HSP 1 Score: 201 bits (510), Expect = 3.370e-56 Identity = 109/279 (39.07%), Postives = 167/279 (59.86%), Query Frame = 1 Query: 1 EWIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDL-VIAGRREKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRS-GNSTE----YRGMVGSLTYALTGTRPDIAHAVHE 819 +W + K DG + RYKARLVA+ FSQ+ G DFF+T APV R+ T R + ++A + + GM V AYLN + + +++ PPE+S S ++ + LYGLKQSGR WN L+ +G+G R +D C+Y+ D G ++VAV+VDD+ ++A E + + ++L + D+G + ++G+++ RN GTIT+SQ +YI +VL+R +C+ V P++ V++ + G S G +T Y VGSL YA G+RPDIAHAV E Sbjct: 29 KWTYRLKRDGDGKITRYKARLVAKGFSQIPGTDFFETYAPVVRLDTFRLLMAIAVQRNLIIHGMDVVGAYLNGKLDESIYMAQPPEYSDGSGKAAHLKLM---LYGLKQSGRVWNEKLNATFLGLGYTRLMSDQCVYIRQMDSGP--IIVAVHVDDMTLLAPDDETMSNMKEELKKKLNVMDMGEIQYILGMKIDRNWDKGTITLSQKAYILKVLERMGMNDCKPVKMPMDPNVRLEKIPAGDSRGVNTATRQYYHTGVGSLMYAANGSRPDIAHAVTE 302
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU) HSP 1 Score: 207 bits (526), Expect = 1.480e-55 Identity = 109/272 (40.07%), Postives = 170/272 (62.50%), Query Frame = 1 Query: 1 EWIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 813 +W+F+ K DGS+ +YKARLVA+ F+QVEG D+ T APV++ +++RTV +LA +D + + M V +A+LN + +E+++ PP F D V RLRKSLYGLKQ+ R+W + +G RS D ++V ++G L++A+YVDD++IAG R +D F +S+R M DLGS ++G+E+ R+ T++ISQ YI ++L+R+ CR V TP+E +K+ + + Y+ +GSL YA+ G+RPD+A AV Sbjct: 1036 KWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPP---GFDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENG--VILIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERHGMANCRPVSTPMEPNLKLEKLSEATI-DPKPYQSALGSLMYAMLGSRPDLAFAV 1301
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 194 bits (493), Expect = 4.520e-54 Identity = 110/272 (40.44%), Postives = 162/272 (59.56%), Query Frame = 1 Query: 4 WIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSF-SRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 813 W+ K ++G + R KAR +A+ +SQ G D+ T APVA ++T+R V +LA D E + M V+ AYL + ++++++VK PP + + S V RLRKSLYGLKQSGR W+ +D + G G + S+ D CLYV GE L++ +YVDDL+I RE V +F H IS+ M DL L ++G+ ++R+ + ISQ +YI +L ++ +C+ V TP+EG + + + N EY +VGSL YA TRPDIA AV Sbjct: 22 WVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDN--EYMKLVGSLLYAALVTRPDIAFAV 290
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU) HSP 1 Score: 202 bits (513), Expect = 7.930e-54 Identity = 113/275 (41.09%), Postives = 163/275 (59.27%), Query Frame = 1 Query: 19 KLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRS---------GNSTEYRGMVGSLTYALTGTRPDIAHAV 813 K ++G + RYK R+VA+ F+Q G D+ APVA + ++R + +LA +D E + M V AAYLN + +EL++ PP + + RL++SLYGLKQ+GR WN TLD L G+G NR +++CLYV DD G+ LV VYVDDL++A R +DE ++ + +M DLG S ++GI +RR+ P I +SQ YI VL RY ++C+ TP+ VK S D + G S Y ++GS+ YA+ GTRPDIA+ V Sbjct: 1036 KFDKNGGIERYKIRIVARGFTQKPGIDYQDVFAPVANLESVRIILALAARYDLELDQMDVSAAYLNGELDEELYLMPP---DGVAIEPGHCWRLKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLV 1306
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 198 bits (504), Expect = 9.680e-54 Identity = 112/272 (41.18%), Postives = 161/272 (59.19%), Query Frame = 1 Query: 4 WIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDV-PFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 813 W+ K + G + R KAR +A+ +SQ G D+ T APVA M+T+R V +LA D E + M VD AYL + +++++++K PP + + + V RLRKSLYGLKQSGR W+ +D + G GL+ S D CLYV GE L++ +YVDDL+I R D+F +IS+ M DL L ++G+ ++RN N T+ ISQ YI +L ++ +C+ V TP+EG + + + N EY +VGSL YA TRPDIA AV Sbjct: 242 WVETDKRDQKGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDN--EYMKLVGSLLYAALVTRPDIAFAV 510
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A6S7I5D1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I5D1_PARCT) HSP 1 Score: 191 bits (484), Expect = 4.660e-53 Identity = 100/271 (36.90%), Postives = 167/271 (61.62%), Query Frame = 1 Query: 4 WIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGRREKV-DEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 813 W+F+ K DGS+ R+KARLVA+ +SQ G D+ +T +PVA+ +++R++ ++A + D E M V A+LN +++E+++K P + + V +L KS+YGLKQS R W NT+D FL G +S++D CLY+ + G+ +L+A+YVDDL+ A +++ + + +RL M DLG + +GI+V R + + + + +LK++ EEC+ TPV+ K+ P+ T+Y+ ++G LTYA+TGTRPD+A A+ Sbjct: 98 WVFKVKYNADGSVKRHKARLVAKGYSQEPGLDYDETFSPVAKYTSIRSLLAIANQLDLEVHQMDVSTAFLNGELEEEIYMKQPEGYVKEGEEE-LVCKLNKSIYGLKQSSRCWYNTIDQFLKNSGYVQSSSDPCLYIKRE--GDDIMLIALYVDDLIPASNSKRMLHKEKEVLRKRLEMKDLGEVHYCLGIQVERYRNKKRMRLHRSQCLTNLLKKFGKEECKPAATPVDQGTKLL-PNEAEPVEKTKYQALIGGLTYAITGTRPDLAQAL 364
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3) HSP 1 Score: 199 bits (505), Expect = 8.610e-53 Identity = 110/283 (38.87%), Postives = 166/283 (58.66%), Query Frame = 1 Query: 4 WIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVI-AGRREKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKIS---------EPDRGRSGN-STEYRGMVGSLTYALTGTRPDIAHAVHE 819 W+F RK E+G + RYKARLVAQ FSQ+ G DF T APV R +LR + ++A + E + + V AYLN +++E+F++ P F V RL+K+LYGLKQSGR+WN LD L + ++S D C+Y+ ++G + + V+VDDL+I + ++++E + + ++DLG ++G+EV+R+ TI++ Q SY+ +LK+Y E CR V TP++ V ++ EP R Y VGSL YA GTRPDIA+AV + Sbjct: 776 WVFLRKYNENGEIIRYKARLVAQGFSQIPGMDFDGTFAPVMRHDSLRALLAIAAIKNLEIQQLDVKGAYLNGDLREEIFMRQP---DGFHDGTSKVCRLKKTLYGLKQSGREWNRKLDKVLTELRFSKSNVDHCVYIRTENGHTS--YITVWVDDLMIFTDKSDEMNEIKAYLKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKKYGMENCRPVSTPMDPNVVLTRVNENDVKDEPREDRDERLGGRYAAAVGSLMYAAIGTRPDIAYAVQK 1053
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A445HPU2_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445HPU2_GLYSO) HSP 1 Score: 198 bits (503), Expect = 1.570e-52 Identity = 108/270 (40.00%), Postives = 170/270 (62.96%), Query Frame = 1 Query: 7 IFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 813 IF RK+K DG++ +YKARLV Q F Q EG DFF T APVAR+ST+R + +LA H+ M V A+LN + +E+++K P F + V +L KSLYGLKQ+ ++W+ D+ ++ G + D CLY D G+ +++ +YVDD++I G +++VDE +S + M D+G ++GI+++R N I+ISQ YI ++L+++ F++C V TP++ +K+ P++G + + EY +GSL YA+ TRPDIA+AV Sbjct: 587 IFRRKMKVDGTVDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHNLMIHQMDVKTAFLNGELDEEIYMKQPEGFVMPGNENK-VCKLMKSLYGLKQAPKQWHQKFDEVVLSSGFVINQADKCLYSKFDTHGK-GVIICLYVDDMLIFGTDQDQVDETKAFLSSKFDMKDMGEADVILGIKIKRG--NNGISISQSHYIEKILEKFNFKDCSPVSTPIDPNLKLL-PNKGVAVSQLEYSRAIGSLMYAMISTRPDIAYAV 851
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A6S7HIB2_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HIB2_PARCT) HSP 1 Score: 196 bits (499), Expect = 4.880e-52 Identity = 101/271 (37.27%), Postives = 168/271 (61.99%), Query Frame = 1 Query: 4 WIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGRREKV-DEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 813 W+F+ K DGS+ R+KARLVA+ +SQ G D+ +T +PVA+ +++R++ ++A + D E M V A+LN +++E+++K P + + V +L KS+YGLKQS R W NT+D FL G +S++D CLY+ + G+ +L+A+YVDDL+ A +++ + + +R M DLG + +GI+V R+ + + Q Y+ + K++ EEC+ TPV+ K+ P+ G T+Y+ ++G LTYA+TGTRPD+A A+ Sbjct: 639 WVFKVKYNADGSVERHKARLVAKGYSQEPGLDYDETFSPVAKYTSIRSLLAIANQLDLEVHQMDVSTAFLNGELEEEIYMKQPEGYVKEGEE-DLVCKLNKSIYGLKQSSRCWYNTIDQFLKNSGYVQSSSDPCLYIKRE--GDDIMLIALYVDDLIPASNSKRMLHKEKEALRKRFEMKDLGEVHYCLGIQVERDRNKKRMRLHQSQYLTNLSKKFGMEECKPAATPVDQGTKLL-PNEGEPVEKTKYQALIGGLTYAVTGTRPDLAQAL 905 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13329.2083.1 >prot_H-paniculata_contig13329.2083.1 ID=prot_H-paniculata_contig13329.2083.1|Name=mRNA_H-paniculata_contig13329.2083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp MGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKback to top mRNA from alignment at H-paniculata_contig13329:155..1374+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13329.2083.1 ID=mRNA_H-paniculata_contig13329.2083.1|Name=mRNA_H-paniculata_contig13329.2083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1220bp|location=Sequence derived from alignment at H-paniculata_contig13329:155..1374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13329:155..1374+ >mRNA_H-paniculata_contig13329.2083.1 ID=mRNA_H-paniculata_contig13329.2083.1|Name=mRNA_H-paniculata_contig13329.2083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig13329:155..1374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |