prot_H-paniculata_contig13329.2083.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13329.2083.1
Unique Nameprot_H-paniculata_contig13329.2083.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length277
Homology
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.970e-42
Identity = 91/221 (41.18%), Postives = 131/221 (59.28%), Query Frame = 0
Query:    1 MGVDAAYLNAPVKQELFVKPPPEFSSFSRD-VPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKV-----KISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAVHEAAVV 214
            M VD AYL + ++++++VK PP +     +    V RLRKSLYGLKQSGR W+  +D +  G G + S+ D CLYV     GE  L++ +YVDDL+IAG  R+ VD+F   IS+ + M DL  L  ++G+ ++RN     + ISQ +YI  +L ++   +C+ V TP+EG +     +  +PDR       EY  +VGSL YA   TRPDIA AV    V+
Sbjct:   84 MDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEGILTKMNGEGDKPDR-------EYMKLVGSLLYAALVTRPDIAFAVQSVLVM 296          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 160 bits (404), Expect = 1.130e-40
Identity = 92/218 (42.20%), Postives = 128/218 (58.72%), Query Frame = 0
Query:    1 MGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRS---------GNSTEYRGMVGSLTYALTGTRPDIAHAV 208
            M V AAYLN  + +EL++ PP      + +     RL++SLYGLKQ+GR WN TLD  L G+G NR  +++CLYV  DD G+   LV VYVDDL++A   R  +DE    ++ + +M DLG  S ++GI +RR+ P   I +SQ  YI  VL RY  ++C+   TP+   VK S  D   +         G S  Y  ++GS+ YA+ GTRPDIA+ V
Sbjct: 1093 MDVSAAYLNGELDEELYLMPP---DGVAIEPGHCWRLKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLV 1306          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 154 bits (389), Expect = 5.590e-39
Identity = 87/210 (41.43%), Postives = 125/210 (59.52%), Query Frame = 0
Query:    1 MGVDAAYLNAPVKQELFVKPPPEFSSFSRDV-PFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 208
            M VD AYL + +++++++K PP +  +  +    V RLRKSLYGLKQSGR W+  +D +  G GL+ S  D CLYV     GE  L++ +YVDDL+I    R   D+F  +IS+   M DL  L  ++G+ ++RN  N T+ ISQ  YI  +L ++   +C+ V TP+EG +   +    +  N  EY  +VGSL YA   TRPDIA AV
Sbjct:  304 MDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDN--EYMKLVGSLLYAALVTRPDIAFAV 510          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 150 bits (380), Expect = 6.670e-39
Identity = 86/210 (40.95%), Postives = 125/210 (59.52%), Query Frame = 0
Query:    1 MGVDAAYLNAPVKQELFVKPPPEFSSF-SRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 208
            M V+ AYL + ++++++VK PP +  + S     V RLRKSLYGLKQSGR W+  +D +  G G + S+ D CLYV     GE  L++ +YVDDL+I    RE V +F H IS+   M DL  L  ++G+ ++R+     + ISQ +YI  +L ++   +C+ V TP+EG +   +    +  N  EY  +VGSL YA   TRPDIA AV
Sbjct:   84 MDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDN--EYMKLVGSLLYAALVTRPDIAFAV 290          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 148 bits (373), Expect = 8.670e-38
Identity = 83/211 (39.34%), Postives = 127/211 (60.19%), Query Frame = 0
Query:    1 MGVDAAYLNAPVKQELFVKPPPEFSSFSRD-VPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGRR-EKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVK-ISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 208
            M V  A+L+AP+  E+F++ P  F   S + V  V RL+KSLYGLKQSGR WN  LD++L+  G  R+  D C+Y      GE  ++V ++VDDL+IA    +K+ +F  N+  + RM DLG +S  +GI  ++   NG I ++Q  YI ++L R+   +C+   TP E + + +S+ ++    +   YR +VGSL Y +T TRPDI+  V
Sbjct:  254 MDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVYQK--QTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQV---DPRRYREIVGSLIYLMTCTRPDISWVV 457          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 151 bits (382), Expect = 8.840e-38
Identity = 87/210 (41.43%), Postives = 124/210 (59.05%), Query Frame = 0
Query:    1 MGVDAAYLNAPVKQELFVKPPPEFSSFSRD-VPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 208
            M V+ AYL + ++++++VK P  +  +  +    V RLRKSLYGLKQSGR W+  +D +  G G + S+ D CLYV     GE  L++ +YVDDL+I    RE VD+F   IS+   M DL  L  ++G+ ++RN     + ISQ +YI  VL ++   +CR V TP+EG +   +    +  N  EY  +VGSL YA   TRPDIA AV
Sbjct:  313 MDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDAKPDN--EYMKLVGSLLYAALVTRPDIAFAV 519          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 150 bits (379), Expect = 2.380e-37
Identity = 82/210 (39.05%), Postives = 126/210 (60.00%), Query Frame = 0
Query:    1 MGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGRRE-KVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVE-GKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 208
            + +  AYLN+ + +E++++ P  F S       V +L+K++YGLKQSGR WNNTLD+ L  +G  RS  ++CLYV     G +   +AVYVDDL+I    E ++      IS +  M+D GSLS  +G+E++R+   G +++ Q +YI  +LK Y  + CR V TP++ G +   + D     N T+Y+ ++GSL Y    +RPDI HAV
Sbjct:  928 IDISNAYLNSSLDEEVYMRQPQNFISTEHPNK-VLKLKKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQGSS--YIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLDPGFLVCCKDDSCVKVNVTQYQSLIGSLMYLAILSRPDILHAV 1134          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 147 bits (371), Expect = 9.020e-37
Identity = 82/211 (38.86%), Postives = 126/211 (59.72%), Query Frame = 0
Query:    1 MGVDAAYLNAPVKQELFVKPPPEFSSFSRD-VPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGRR-EKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVK-ISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 208
            M V  A+L+ P+  E+F++ P  F   S + V  V RL+KSLYGLKQSGR WN  LD++L+  G  R+  D C+Y      GE  ++V ++VDDL+IA    +K+ +F  N+  + RM DLG +S  +GI  ++   NG I ++Q  YI ++L R+   +C+   TP E + + +S+ ++    +   YR +VGSL Y +T TRPDI+  V
Sbjct:  279 MDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVYQK--QTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQV---DPRRYREIVGSLIYLMTCTRPDISWVV 482          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.010e-36
Identity = 85/210 (40.48%), Postives = 125/210 (59.52%), Query Frame = 0
Query:    1 MGVDAAYLNAPVKQELFVKPPPEFSSF-SRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 208
            M V+ AYL + ++++++VK P  +  + S     V RLRKSLYGLKQSGR W+  +D +  G G + S+ D CLYV     GE  L++ +YVDDL+I    RE V++F H IS+   M DL  L  ++G+ ++R+     + ISQ +YI  +L ++   +C+ V TP+EG +   +    +  N  EY  +VGSL YA   TRPDIA AV
Sbjct:  524 MDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADCKPVLTPMEGTLTKMDGKDVKPDN--EYMKLVGSLLYAALVTRPDIAFAV 730          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 148 bits (374), Expect = 1.110e-36
Identity = 85/212 (40.09%), Postives = 124/212 (58.49%), Query Frame = 0
Query:    1 MGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGRR-EKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTE---YRGMVGSLTYALTGTRPDIAHAV 208
            M V  A+L+  + QELF++ P  F    +D   V  L+KSLYGLKQS R WN   + F+ G    RS  DSC+YV   +GG   LL+  YVDD++IA +   ++D     +S    M D+G+ SR++GI+++R+   G + +SQ SY+ +V+KR+   E + V TP+ G  K+S          TE   Y   VGS+ YA+ GTRPDIA+A+
Sbjct:  950 MDVKTAFLHGDLDQELFMEQPEGFE-VDKDKDQVCLLKKSLYGLKQSPRLWNKKFNQFITGEKFIRSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKYPYSSAVGSVMYAMIGTRPDIAYAI 1158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TII5_9STRA1.970e-4241.18Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A1M2VT18_TRAPU1.130e-4042.20Retrovirus-related Pol polyprotein from transposon... [more]
W7TJ26_9STRA5.590e-3941.43Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA6.670e-3940.95Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A7D9HG25_PARCT8.670e-3839.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TIM1_9STRA8.840e-3841.43Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W8BWJ0_CERCA2.380e-3739.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A6S7HLY2_PARCT9.020e-3738.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7T0T3_9STRA1.010e-3640.48Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A1J3F7G4_NOCCA1.110e-3640.09Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..166
e-value: 3.1E-37
score: 128.5
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 32..210
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 246..276
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 226..245
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..225
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 36..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13329contigH-paniculata_contig13329:344..1252 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13329.2083.1mRNA_H-paniculata_contig13329.2083.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13329 155..1374 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13329.2083.1 ID=prot_H-paniculata_contig13329.2083.1|Name=mRNA_H-paniculata_contig13329.2083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
MGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRK
WNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGRR
EKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEV
LKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGT
RPDIAHAVHEAAVVWRTHIGKTSVHASAFFVISVLCLTSALRSAVRVMVT
AWKDSLMPIGRKISRTESPQQGTFSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2