mRNA_H-paniculata_contig13329.2083.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13329.2083.1
Unique NamemRNA_H-paniculata_contig13329.2083.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 199 bits (507), Expect = 9.070e-58
Identity = 113/283 (39.93%), Postives = 168/283 (59.36%), Query Frame = 1
Query:    4 WIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRD-VPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKV-----KISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAVHEAAVV 831
            W+   K  ++G + R KAR +A+ +SQ  G D+  T APVA ++T+R + ++A   D E + M VD AYL + ++++++VK PP +     +    V RLRKSLYGLKQSGR W+  +D +  G G + S+ D CLYV     GE  L++ +YVDDL+IAG  R+ VD+F   IS+ + M DL  L  ++G+ ++RN     + ISQ +YI  +L ++   +C+ V TP+EG +     +  +PDR       EY  +VGSL YA   TRPDIA AV    V+
Sbjct:   22 WVETDKRDQNGIIVRRKARFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEGILTKMNGEGDKPDR-------EYMKLVGSLLYAALVTRPDIAFAVQSVLVM 296          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A284QR55_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284QR55_ARMOS)

HSP 1 Score: 201 bits (510), Expect = 3.370e-56
Identity = 109/279 (39.07%), Postives = 167/279 (59.86%), Query Frame = 1
Query:    1 EWIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDL-VIAGRREKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRS-GNSTE----YRGMVGSLTYALTGTRPDIAHAVHE 819
            +W +  K   DG + RYKARLVA+ FSQ+ G DFF+T APV R+ T R + ++A + +    GM V  AYLN  + + +++  PPE+S  S     ++ +   LYGLKQSGR WN  L+   +G+G  R  +D C+Y+   D G   ++VAV+VDD+ ++A   E +      + ++L + D+G +  ++G+++ RN   GTIT+SQ +YI +VL+R    +C+ V  P++  V++ +   G S G +T     Y   VGSL YA  G+RPDIAHAV E
Sbjct:   29 KWTYRLKRDGDGKITRYKARLVAKGFSQIPGTDFFETYAPVVRLDTFRLLMAIAVQRNLIIHGMDVVGAYLNGKLDESIYMAQPPEYSDGSGKAAHLKLM---LYGLKQSGRVWNEKLNATFLGLGYTRLMSDQCVYIRQMDSGP--IIVAVHVDDMTLLAPDDETMSNMKEELKKKLNVMDMGEIQYILGMKIDRNWDKGTITLSQKAYILKVLERMGMNDCKPVKMPMDPNVRLEKIPAGDSRGVNTATRQYYHTGVGSLMYAANGSRPDIAHAVTE 302          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 207 bits (526), Expect = 1.480e-55
Identity = 109/272 (40.07%), Postives = 170/272 (62.50%), Query Frame = 1
Query:    1 EWIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 813
            +W+F+ K   DGS+ +YKARLVA+ F+QVEG D+  T APV++ +++RTV +LA  +D + + M V +A+LN  + +E+++  PP    F  D   V RLRKSLYGLKQ+ R+W   +      +G  RS  D  ++V  ++G    L++A+YVDD++IAG  R  +D F   +S+R  M DLGS   ++G+E+ R+    T++ISQ  YI ++L+R+    CR V TP+E  +K+ +       +   Y+  +GSL YA+ G+RPD+A AV
Sbjct: 1036 KWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPP---GFDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENG--VILIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERHGMANCRPVSTPMEPNLKLEKLSEATI-DPKPYQSALGSLMYAMLGSRPDLAFAV 1301          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 194 bits (493), Expect = 4.520e-54
Identity = 110/272 (40.44%), Postives = 162/272 (59.56%), Query Frame = 1
Query:    4 WIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSF-SRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 813
            W+   K  ++G + R KAR +A+ +SQ  G D+  T APVA ++T+R V +LA   D E + M V+ AYL + ++++++VK PP +  + S     V RLRKSLYGLKQSGR W+  +D +  G G + S+ D CLYV     GE  L++ +YVDDL+I    RE V +F H IS+   M DL  L  ++G+ ++R+     + ISQ +YI  +L ++   +C+ V TP+EG +   +    +  N  EY  +VGSL YA   TRPDIA AV
Sbjct:   22 WVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDN--EYMKLVGSLLYAALVTRPDIAFAV 290          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 202 bits (513), Expect = 7.930e-54
Identity = 113/275 (41.09%), Postives = 163/275 (59.27%), Query Frame = 1
Query:   19 KLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRS---------GNSTEYRGMVGSLTYALTGTRPDIAHAV 813
            K  ++G + RYK R+VA+ F+Q  G D+    APVA + ++R + +LA  +D E + M V AAYLN  + +EL++ PP      + +     RL++SLYGLKQ+GR WN TLD  L G+G NR  +++CLYV  DD G+   LV VYVDDL++A   R  +DE    ++ + +M DLG  S ++GI +RR+ P   I +SQ  YI  VL RY  ++C+   TP+   VK S  D   +         G S  Y  ++GS+ YA+ GTRPDIA+ V
Sbjct: 1036 KFDKNGGIERYKIRIVARGFTQKPGIDYQDVFAPVANLESVRIILALAARYDLELDQMDVSAAYLNGELDEELYLMPP---DGVAIEPGHCWRLKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLV 1306          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 198 bits (504), Expect = 9.680e-54
Identity = 112/272 (41.18%), Postives = 161/272 (59.19%), Query Frame = 1
Query:    4 WIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDV-PFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 813
            W+   K  + G + R KAR +A+ +SQ  G D+  T APVA M+T+R V +LA   D E + M VD AYL + +++++++K PP +  +  +    V RLRKSLYGLKQSGR W+  +D +  G GL+ S  D CLYV     GE  L++ +YVDDL+I    R   D+F  +IS+   M DL  L  ++G+ ++RN  N T+ ISQ  YI  +L ++   +C+ V TP+EG +   +    +  N  EY  +VGSL YA   TRPDIA AV
Sbjct:  242 WVETDKRDQKGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDN--EYMKLVGSLLYAALVTRPDIAFAV 510          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A6S7I5D1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I5D1_PARCT)

HSP 1 Score: 191 bits (484), Expect = 4.660e-53
Identity = 100/271 (36.90%), Postives = 167/271 (61.62%), Query Frame = 1
Query:    4 WIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGRREKV-DEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 813
            W+F+ K   DGS+ R+KARLVA+ +SQ  G D+ +T +PVA+ +++R++ ++A + D E   M V  A+LN  +++E+++K P  +     +   V +L KS+YGLKQS R W NT+D FL   G  +S++D CLY+  +  G+  +L+A+YVDDL+ A   +++  +    + +RL M DLG +   +GI+V R      + + +   +  +LK++  EEC+   TPV+   K+  P+       T+Y+ ++G LTYA+TGTRPD+A A+
Sbjct:   98 WVFKVKYNADGSVKRHKARLVAKGYSQEPGLDYDETFSPVAKYTSIRSLLAIANQLDLEVHQMDVSTAFLNGELEEEIYMKQPEGYVKEGEEE-LVCKLNKSIYGLKQSSRCWYNTIDQFLKNSGYVQSSSDPCLYIKRE--GDDIMLIALYVDDLIPASNSKRMLHKEKEVLRKRLEMKDLGEVHYCLGIQVERYRNKKRMRLHRSQCLTNLLKKFGKEECKPAATPVDQGTKLL-PNEAEPVEKTKYQALIGGLTYAITGTRPDLAQAL 364          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3)

HSP 1 Score: 199 bits (505), Expect = 8.610e-53
Identity = 110/283 (38.87%), Postives = 166/283 (58.66%), Query Frame = 1
Query:    4 WIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVI-AGRREKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKIS---------EPDRGRSGN-STEYRGMVGSLTYALTGTRPDIAHAVHE 819
            W+F RK  E+G + RYKARLVAQ FSQ+ G DF  T APV R  +LR + ++A   + E + + V  AYLN  +++E+F++ P     F      V RL+K+LYGLKQSGR+WN  LD  L  +  ++S  D C+Y+  ++G  +   + V+VDDL+I   + ++++E    + +   ++DLG    ++G+EV+R+    TI++ Q SY+  +LK+Y  E CR V TP++  V ++         EP   R       Y   VGSL YA  GTRPDIA+AV +
Sbjct:  776 WVFLRKYNENGEIIRYKARLVAQGFSQIPGMDFDGTFAPVMRHDSLRALLAIAAIKNLEIQQLDVKGAYLNGDLREEIFMRQP---DGFHDGTSKVCRLKKTLYGLKQSGREWNRKLDKVLTELRFSKSNVDHCVYIRTENGHTS--YITVWVDDLMIFTDKSDEMNEIKAYLKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKKYGMENCRPVSTPMDPNVVLTRVNENDVKDEPREDRDERLGGRYAAAVGSLMYAAIGTRPDIAYAVQK 1053          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A445HPU2_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445HPU2_GLYSO)

HSP 1 Score: 198 bits (503), Expect = 1.570e-52
Identity = 108/270 (40.00%), Postives = 170/270 (62.96%), Query Frame = 1
Query:    7 IFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGR-REKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 813
            IF RK+K DG++ +YKARLV Q F Q EG DFF T APVAR+ST+R + +LA  H+     M V  A+LN  + +E+++K P  F     +   V +L KSLYGLKQ+ ++W+   D+ ++  G   +  D CLY   D  G+  +++ +YVDD++I G  +++VDE    +S +  M D+G    ++GI+++R   N  I+ISQ  YI ++L+++ F++C  V TP++  +K+  P++G + +  EY   +GSL YA+  TRPDIA+AV
Sbjct:  587 IFRRKMKVDGTVDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHNLMIHQMDVKTAFLNGELDEEIYMKQPEGFVMPGNENK-VCKLMKSLYGLKQAPKQWHQKFDEVVLSSGFVINQADKCLYSKFDTHGK-GVIICLYVDDMLIFGTDQDQVDETKAFLSSKFDMKDMGEADVILGIKIKRG--NNGISISQSHYIEKILEKFNFKDCSPVSTPIDPNLKLL-PNKGVAVSQLEYSRAIGSLMYAMISTRPDIAYAV 851          
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Match: A0A6S7HIB2_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HIB2_PARCT)

HSP 1 Score: 196 bits (499), Expect = 4.880e-52
Identity = 101/271 (37.27%), Postives = 168/271 (61.99%), Query Frame = 1
Query:    4 WIFERKLKEDGSMARYKARLVAQDFSQVEGEDFFKTSAPVARMSTLRTVFSLATEHDFE*EGMGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRKWNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGRREKV-DEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEVLKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGTRPDIAHAV 813
            W+F+ K   DGS+ R+KARLVA+ +SQ  G D+ +T +PVA+ +++R++ ++A + D E   M V  A+LN  +++E+++K P  +     +   V +L KS+YGLKQS R W NT+D FL   G  +S++D CLY+  +  G+  +L+A+YVDDL+ A   +++  +    + +R  M DLG +   +GI+V R+     + + Q  Y+  + K++  EEC+   TPV+   K+  P+ G     T+Y+ ++G LTYA+TGTRPD+A A+
Sbjct:  639 WVFKVKYNADGSVERHKARLVAKGYSQEPGLDYDETFSPVAKYTSIRSLLAIANQLDLEVHQMDVSTAFLNGELEEEIYMKQPEGYVKEGEE-DLVCKLNKSIYGLKQSSRCWYNTIDQFLKNSGYVQSSSDPCLYIKRE--GDDIMLIALYVDDLIPASNSKRMLHKEKEALRKRFEMKDLGEVHYCLGIQVERDRNKKRMRLHQSQYLTNLSKKFGMEECKPAATPVDQGTKLL-PNEGEPVEKTKYQALIGGLTYAVTGTRPDLAQAL 905          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13329.2083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TII5_9STRA9.070e-5839.93Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A284QR55_ARMOS3.370e-5639.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VV58_TRAPU1.480e-5540.07Retrovirus-related Pol polyprotein from transposon... [more]
W7TCB8_9STRA4.520e-5440.44Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A1M2VT18_TRAPU7.930e-5441.09Retrovirus-related Pol polyprotein from transposon... [more]
W7TJ26_9STRA9.680e-5441.18Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A6S7I5D1_PARCT4.660e-5336.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A067T5Q4_GALM38.610e-5338.87Integrase catalytic domain-containing protein (Fra... [more]
A0A445HPU2_GLYSO1.570e-5240.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A6S7HIB2_PARCT4.880e-5237.27Retrovirus-related Pol poly from transposon TNT 1-... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13329contigH-paniculata_contig13329:155..1374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score142.9
Seed ortholog evalue2.2e-31
Seed eggNOG ortholog15368.BRADI3G35960.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size1142
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13329.2083.1prot_H-paniculata_contig13329.2083.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13329 344..1252 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929056.481107-UTR-H-paniculata_contig13329:154..3431622929056.481107-UTR-H-paniculata_contig13329:154..343Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13329 155..343 +
1691480714.6076052-UTR-H-paniculata_contig13329:154..3431691480714.6076052-UTR-H-paniculata_contig13329:154..343Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13329 155..343 +
1622929056.5370476-UTR-H-paniculata_contig13329:1252..13741622929056.5370476-UTR-H-paniculata_contig13329:1252..1374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13329 1253..1374 +
1691480714.634581-UTR-H-paniculata_contig13329:1252..13741691480714.634581-UTR-H-paniculata_contig13329:1252..1374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13329 1253..1374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929056.5007837-CDS-H-paniculata_contig13329:343..8701622929056.5007837-CDS-H-paniculata_contig13329:343..870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13329 344..870 +
1691480714.6171615-CDS-H-paniculata_contig13329:343..8701691480714.6171615-CDS-H-paniculata_contig13329:343..870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13329 344..870 +
1622929056.5210102-CDS-H-paniculata_contig13329:948..12521622929056.5210102-CDS-H-paniculata_contig13329:948..1252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13329 949..1252 +
1691480714.6256645-CDS-H-paniculata_contig13329:948..12521691480714.6256645-CDS-H-paniculata_contig13329:948..1252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13329 949..1252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13329.2083.1

>prot_H-paniculata_contig13329.2083.1 ID=prot_H-paniculata_contig13329.2083.1|Name=mRNA_H-paniculata_contig13329.2083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
MGVDAAYLNAPVKQELFVKPPPEFSSFSRDVPFVRRLRKSLYGLKQSGRK
WNNTLDDFLVGIGLNRSTTDSCLYVSCDDGGETNLLVAVYVDDLVIAGRR
EKVDEFNHNISQRLRMNDLGSLSRVMGIEVRRNCPNGTITISQGSYICEV
LKRYCFEECRGVPTPVEGKVKISEPDRGRSGNSTEYRGMVGSLTYALTGT
RPDIAHAVHEAAVVWRTHIGKTSVHASAFFVISVLCLTSALRSAVRVMVT
AWKDSLMPIGRKISRTESPQQGTFSS*
back to top

mRNA from alignment at H-paniculata_contig13329:155..1374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13329.2083.1 ID=mRNA_H-paniculata_contig13329.2083.1|Name=mRNA_H-paniculata_contig13329.2083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1220bp|location=Sequence derived from alignment at H-paniculata_contig13329:155..1374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATGGATTTTCGAGCGGAAACTGAAGGAGGATGGAAGCATGGCACGCTA CAAAGCGCGACTGGTGGCTCAAGATTTTTCACAGGTGGAGGGTGAAGATT TCTTCAAAACCAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTACTGTT TTTAGCCTGGCCACGGAACATGATTTCGAATGAGAAGGTATGGGCGTAGA TGCGGCGTATTTAAACGCCCCGGTAAAACAAGAGCTGTTTGTTAAGCCAC CCCCCGAGTTTTCCTCTTTCTCCCGAGACGTACCGTTTGTGCGCCGCCTG CGTAAAAGCCTGTACGGCCTCAAGCAGAGCGGCCGAAAATGGAATAACAC TCTTGACGATTTTCTTGTTGGGATAGGACTCAACCGTTCCACTACCGACT CATGCCTGTACGTTTCCTGCGACGATGGGGGAGAGACAAACCTTCTGGTG GCCGTCTATGTTGACGACCTGGTCATTGCTGGCCGCCGTGAGAAAGTAGA CGAGTTCAACCATAACATAAGTCAGCGTTTAAGGATGAATGACTTGGGCT CTCTCTCGCGCGTGATGGGAATAGAAGTACGGCGTAACTGCCCTAATGGT ACCATAACCATCTCGCAGGGTAGCTACATCTGCGAGGTACTAAAAAGATA CTGTTTTGAGGAGTGTCGAGGAGTACCCACGCCTGTAGAGGGAAAAGTGA AGATTTCAGAACCCGAGTCGACCGACAAGCCCTCTGATTCGAAGTCACTT GGAGCTGTAGTGTTGGACATAGGCGCAGGAGTACAAGAAATCAGCAGAGG GAGAAGTGGCAATTCGACTGAATACAGAGGCATGGTAGGATCACTCACGT ACGCCTTGACCGGAACTAGACCTGATATAGCACACGCGGTACACGAAGCA GCAGTCGTATGGAGGACCCATATCGGGAAGACTTCAGTACATGCAAGCGC TTTTTTCGTTATCTCAGTACTGTGCCTGACCTCGGCATTACGTTCGGCGG TAAGAGTAATGGTCACGGCCTGGAAGGATTCGTTGATGCCGATTGGGCGG AAGATATCGAGGACCGAAAGTCCACAACAGGGTACGTTTTCAAGCTGAAC GGTGGTGCAATAAGTTGGTGCTCTAAGAAGCAACAGTTAGTCACGTGGTC CAGTACAGAGGCAGAGTACGTTGCTGCAGGAGACGCGAGAAAGGAGACGG TATATCTTTGGGAGTTACTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13329:155..1374+

>mRNA_H-paniculata_contig13329.2083.1 ID=mRNA_H-paniculata_contig13329.2083.1|Name=mRNA_H-paniculata_contig13329.2083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig13329:155..1374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGTAGATGCGGCGTATTTAAACGCCCCGGTAAAACAAGAGCTGTT
TGTTAAGCCACCCCCCGAGTTTTCCTCTTTCTCCCGAGACGTACCGTTTG
TGCGCCGCCTGCGTAAAAGCCTGTACGGCCTCAAGCAGAGCGGCCGAAAA
TGGAATAACACTCTTGACGATTTTCTTGTTGGGATAGGACTCAACCGTTC
CACTACCGACTCATGCCTGTACGTTTCCTGCGACGATGGGGGAGAGACAA
ACCTTCTGGTGGCCGTCTATGTTGACGACCTGGTCATTGCTGGCCGCCGT
GAGAAAGTAGACGAGTTCAACCATAACATAAGTCAGCGTTTAAGGATGAA
TGACTTGGGCTCTCTCTCGCGCGTGATGGGAATAGAAGTACGGCGTAACT
GCCCTAATGGTACCATAACCATCTCGCAGGGTAGCTACATCTGCGAGGTA
CTAAAAAGATACTGTTTTGAGGAGTGTCGAGGAGTACCCACGCCTGTAGA
GGGAAAAGTGAAGATTTCAGAACCCGAATGGGCGTAGATGCGGCGTATTT
AAACGCCCCGGTAAAACAAGAGCTGTTTGTTAAGCCACCCCCCGAGTTTT
CCTCTTTCTCCCGAGACGTACCGTTTGTGCGCCGCCTGCGTAAAAGCCTG
TACGGCCTCAAGCAGAGCGGCCGAAAATGGAATAACACTCTTGACGATTT
TCTTGTTGGGATAGGACTCAACCGTTCCACTACCGACTCATGCCTGTACG
TTTCCTGCGACGATGGGGGAGAGACAAACCTTCTGGTGGCCGTCTATGTT
GACGACCTGGTCATTGCTGGCCGCCGTGAGAAAGTAGACGAGTTCAACCA
TAACATAAGTCAGCGTTTAAGGATGAATGACTTGGGCTCTCTCTCGCGCG
TGATGGGAATAGAAGTACGGCGTAACTGCCCTAATGGTACCATAACCATC
TCGCAGGGTAGCTACATCTGCGAGGTACTAAAAAGATACTGTTTTGAGGA
GTGTCGAGGAGTACCCACGCCTGTAGAGGGAAAAGTGAAGATTTCAGAAC
CCGACAGAGGGAGAAGTGGCAATTCGACTGAATACAGAGGCATGGTAGGA
TCACTCACGTACGCCTTGACCGGAACTAGACCTGATATAGCACACGCGGT
ACACGAAGCAGCAGTCGTATGGAGGACCCATATCGGGAAGACTTCAGTAC
ATGCAAGCGCTTTTTTCGTTATCTCAGTACTGTGCCTGACCTCGGCATTA
CGTTCGGCGGTAAGAGTAATGGTCACGGCCTGGAAGGATTCGTTGATGCC
GATTGGGCGGAAGATATCGAGGACCGAAAGTCCACAACAGGGTACGTTTT
CAAGCTGACAGAGGGAGAAGTGGCAATTCGACTGAATACAGAGGCATGGT
AGGATCACTCACGTACGCCTTGACCGGAACTAGACCTGATATAGCACACG
CGGTACACGAAGCAGCAGTCGTATGGAGGACCCATATCGGGAAGACTTCA
GTACATGCAAGCGCTTTTTTCGTTATCTCAGTACTGTGCCTGACCTCGGC
ATTACGTTCGGCGGTAAGAGTAATGGTCACGGCCTGGAAGGATTCGTTGA
TGCCGATTGGGCGGAAGATATCGAGGACCGAAAGTCCACAACAGGGTACG
TTTTCAAGCTGA
back to top