mRNA_H-paniculata_contig13324.2080.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13324.2080.1
Unique NamemRNA_H-paniculata_contig13324.2080.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13324.2080.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.360e-40
Identity = 71/157 (45.22%), Postives = 103/157 (65.61%), Query Frame = 1
Query:   40 FERGDYLLTARVRKLGTTPKWFGTWTGPWRIVTAGSAHVYTVGDIVTGAKNEVHVVRVRPYADASLVVGKDVHAVFAAAQHQGEFQIVDILDIGESPDKKGEYVVLVEWVGLGAEEHSWEPVTVIHEDVPQYLKRKLKKMRLDASTRAALKAKYNII 510
            F  GDY++ ARVR+ G TPK   TWTGPWR+V+A   HVY V +IV G   +VHV R+R YAD+ L V  D+  VF  +  QGE ++  IL+IG + D  G Y+V V W G   +E +W+P++ I++D PQ+LK++L+KM+L    +  +K +Y I+
Sbjct:   15 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSG-YLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEVKDNIKKEYGIV 170          
BLAST of mRNA_H-paniculata_contig13324.2080.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.820e-37
Identity = 71/157 (45.22%), Postives = 102/157 (64.97%), Query Frame = 1
Query:   40 FERGDYLLTARVRKLGTTPKWFGTWTGPWRIVTAGSAHVYTVGDIVTGAKNEVHVVRVRPYADASLVVGKDVHAVFAAAQHQGEFQIVDILDIGESPDKKGEYVVLVEWVGLGAEEHSWEPVTVIHEDVPQYLKRKLKKMRLDASTRAALKAKYNII 510
            F  GDY++ ARVR+ G TPK   TWTGPWR+V+A   HVY V +IV G   +VHV R+R YAD+ L V  D+  VF  +  QGE ++  IL+IG + D  G Y+V V W G   +E +W+P++ I++D PQ+LK++L+KM+L    +  +K  Y I+
Sbjct:  270 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSG-YLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEIKDNIKKDYGIV 425          
BLAST of mRNA_H-paniculata_contig13324.2080.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.540e-36
Identity = 71/157 (45.22%), Postives = 103/157 (65.61%), Query Frame = 1
Query:   40 FERGDYLLTARVRKLGTTPKWFGTWTGPWRIVTAGSAHVYTVGDIVTGAKNEVHVVRVRPYADASLVVGKDVHAVFAAAQHQGEFQIVDILDIGESPDKKGEYVVLVEWVGLGAEEHSWEPVTVIHEDVPQYLKRKLKKMRLDASTRAALKAKYNII 510
            F  GDY++ ARVR+ G TPK   TWTGPWR+V+A   HVY V +IV G   +VHV R+R YAD+ L V  D+  VF  +  QGE ++  IL+IG + D  G Y+V V W G   +E +W+P++ I++D PQ+LK++L+KM+L    +  +K +Y I+
Sbjct: 1493 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSG-YLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEVKDNIKKEYGIV 1648          
BLAST of mRNA_H-paniculata_contig13324.2080.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 8.420e-20
Identity = 59/159 (37.11%), Postives = 93/159 (58.49%), Query Frame = 1
Query:   37 EFERGDYLLTARVRKLGTTPKWFGTWTGPWRIVTAGSAHVYTVGDIVTGAKNEVHVVRVRPYADASLVVGKDVHAVFAAAQHQGEFQIVDILDIGESPDKKGEYVVLVEWVGLGAEEHSWEPVTVIHEDVPQYLKRKLKKMRLDASTRAALKAKYNIIM 513
            +  R  +  +ARV   G+ P +     G + IV A   HVY V +IV+G   +VHV R+R YADA+L +  ++  VF  A  QGEF++  I+D+  + D  G + V VEWVG   EE++WE ++ + +  PQ++K +L+++ L    RA LK +Y I +
Sbjct: 1577 QASRSKHRASARV---GSLPDFV---VGDYVIVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG-FDVEVEWVGFDKEENTWEELSKMWDAAPQFVKSELRRLGLQKKVRAQLKQQYGIAL 1728          
BLAST of mRNA_H-paniculata_contig13324.2080.1 vs. uniprot
Match: W2P9U5_PHYPN (Chromo domain-containing protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2P9U5_PHYPN)

HSP 1 Score: 77.8 bits (190), Expect = 5.150e-15
Identity = 47/131 (35.88%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   37 EFERGDYLLTARVRKLGTTPKWFGTWTGPWRIVTAGSAHVYTVGDIVTGAKNEVHVVRVRPYADASLVVGKDVHAVFAAAQHQGEFQIVDILDIGESPDKKGEYVVLVEWVGLGAEEHSWEPVTVIHEDVP 429
            +F+ GD++L A V +  T  K    W GP ++  A S  ++ + ++VTG + E H  R++ YAD SL V +D+H   A   H  E  +VD          +  + +LV W GL   E SWEP TV+ +DVP
Sbjct:    3 QFDVGDFVLCADVWQH-TGAKLRVKWCGPAQVTAATSNWIFEIENLVTGERREAHASRLKFYADNSLAVTEDLHRHVA---HNSEGHVVDTFLSTRYNTNEKRHELLVHWRGLDTVEDSWEPATVLLQDVP 129          
BLAST of mRNA_H-paniculata_contig13324.2080.1 vs. uniprot
Match: A0A6A3ESV1_9STRA (Chromo domain-containing protein n=9 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3ESV1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.440e-14
Identity = 55/146 (37.67%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   40 FERGDYLLTARVRKLGTTPKWFGTWTGPWRIVTAGSAHVYTVGDIVTG-AKNEVHVVRVRPYADASLVVGKDVHAVFAAAQHQGEFQIVDILDIGESPDKKGEYVVLVEWVGLGAEEHSWEPVTVIHEDVPQYLKRKLKKMRLDAS 474
            F  GD++LTA V  L    K    W GP RIV A S +V+ V D++   A +  H  R++ YADAS  V +D+    A A H     +V  L       +   + + VEW+GL   E SWEP T+I+EDVP+ +KR + +   DA+
Sbjct:   55 FTEGDFVLTAHV--LSRANKLAVQWKGPKRIVKALSDYVFEVLDLMAPFAISTHHASRLKFYADASRNVTEDL---VAQAMHADGGHLVSKLVKCRMRPETHTWEIQVEWIGLDPLEASWEPATIIYEDVPELVKRFVLRANSDAA 195          
BLAST of mRNA_H-paniculata_contig13324.2080.1 vs. uniprot
Match: A0A6A4B5G7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4B5G7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.960e-13
Identity = 55/146 (37.67%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   40 FERGDYLLTARVRKLGTTPKWFGTWTGPWRIVTAGSAHVYTVGDIVTG-AKNEVHVVRVRPYADASLVVGKDVHAVFAAAQHQGEFQIVDILDIGESPDKKGEYVVLVEWVGLGAEEHSWEPVTVIHEDVPQYLKRKLKKMRLDAS 474
            F  GD++LTA V  L    K    W GP RIV A S +V+ V D++   A +  H  R++ YADAS  V +D+    A A H     +V  L       +   + + VEW+GL   E SWEP T+I+EDVP+ +KR + +   DA+
Sbjct:  217 FTEGDFVLTAHV--LSRANKLAVQWKGPKRIVKALSDYVFEVQDLMAPFAISTHHASRLKFYADASRNVTEDL---VAQAMHADGGHLVSKLVKCRMGPETHTWEIQVEWIGLDPLEASWEPATIIYEDVPELVKRFVLRANSDAA 357          
BLAST of mRNA_H-paniculata_contig13324.2080.1 vs. uniprot
Match: A0A225UWE1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UWE1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.250e-12
Identity = 43/136 (31.62%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   25 GKCREFERGDYLLTARVRKLGTTPKWFGTWTGPWRIVTAGSAHVYTVGDIVTGAKNEVHVVRVRPYADASLVVGKDVHAVFAAAQHQGEFQIVDILDIGESPDKKGEYVVLVEWVGLGAEEHSWEPVTVIHEDVPQ 432
            G    F+ GD++L +R+ +     K  G W GP++++ A   H + +  +++G + EVH  R++ YADA L    ++  + A+   QG    VD +           + +LV W+GL A E+SWEP+T++ +DVP+
Sbjct:  457 GSTVNFDVGDFVLWSRIDQRLPNNKLLGQWIGPFKVIEA-KPHSFAIQHLISGRQYEVHASRLKYYADADLNQTAELMELVAS---QGMLLGVDAICDHRFNQALQRWELLVSWMGLQAIENSWEPLTILLQDVPK 588          
BLAST of mRNA_H-paniculata_contig13324.2080.1 vs. uniprot
Match: A0A080ZI93_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A080ZI93_PHYPR)

HSP 1 Score: 72.8 bits (177), Expect = 8.930e-12
Identity = 41/112 (36.61%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   94 PKWFGTWTGPWRIVTAGSAHVYTVGDIVTGAKNEVHVVRVRPYADASLVVGKDVHAVFAAAQHQGEFQIVDILDIGESPDKKGEYVVLVEWVGLGAEEHSWEPVTVIHEDVP 429
            PK    W GP ++  A S  ++ + ++VTG + E H  R++ YAD SL V +D+H   A   H  E  +VD          +  + +LV W GL   E SWEP TV+ +DVP
Sbjct: 1392 PKLRVKWCGPAQVTAATSNWIFEIENLVTGERREAHASRLKFYADNSLAVTEDLHRHVA---HNSEGHVVDTFLSTRYNTNEKRHELLVHWRGLDTVEDSWEPATVLLQDVP 1500          
BLAST of mRNA_H-paniculata_contig13324.2080.1 vs. uniprot
Match: A0A6A3DQC9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DQC9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.490e-11
Identity = 42/135 (31.11%), Postives = 70/135 (51.85%), Query Frame = 1
Query:   25 GKCREFERGDYLLTARVRKLGTTPKWFGTWTGPWRIVTAGSAHVYTVGDIVTGAKNEVHVVRVRPYADASLVVGKDVHAVFAAAQHQGEFQIVDILDIGESPDKKGEYVVLVEWVGLGAEEHSWEPVTVIHEDVP 429
            G    FE GD++L +R+ +     K  G W GP++++ A   H + +  +++G + +VHV R++ YADA L        +      QG    V+ +           + +LV W+GL A E+SWEP+T + +DVP
Sbjct:  515 GSVVNFEVGDFVLWSRIDQRLPNNKLLGQWVGPFKVIEA-KPHSFVIQHLISGREYDVHVSRLKFYADAEL---NQTEELLELVSSQGMMLGVEAICDHLFNHTLERWELLVSWMGLQAIENSWEPLTTLLQDVP 645          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13324.2080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE2.360e-4045.22Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JVS6_9PHAE2.820e-3745.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE2.540e-3645.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE8.420e-2037.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W2P9U5_PHYPN5.150e-1535.88Chromo domain-containing protein n=7 Tax=Phytophth... [more]
A0A6A3ESV1_9STRA7.440e-1437.67Chromo domain-containing protein n=9 Tax=Phytophth... [more]
A0A6A4B5G7_9STRA1.960e-1337.67Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A225UWE1_9STRA1.250e-1231.62Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A080ZI93_PHYPR8.930e-1236.61Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
A0A6A3DQC9_9STRA1.490e-1131.11Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13324contigH-paniculata_contig13324:1495..2010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog164328.Phyra85429
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QDQ4@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size516
Cds size516
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929056.079331-CDS-H-paniculata_contig13324:1494..20101622929056.079331-CDS-H-paniculata_contig13324:1494..2010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13324 1495..2010 +
1691480714.4454741-CDS-H-paniculata_contig13324:1494..20101691480714.4454741-CDS-H-paniculata_contig13324:1494..2010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13324 1495..2010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13324.2080.1prot_H-paniculata_contig13324.2080.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13324 1495..2010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13324.2080.1

>prot_H-paniculata_contig13324.2080.1 ID=prot_H-paniculata_contig13324.2080.1|Name=mRNA_H-paniculata_contig13324.2080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=172bp
ASEGRQDGGKCREFERGDYLLTARVRKLGTTPKWFGTWTGPWRIVTAGSA
HVYTVGDIVTGAKNEVHVVRVRPYADASLVVGKDVHAVFAAAQHQGEFQI
VDILDIGESPDKKGEYVVLVEWVGLGAEEHSWEPVTVIHEDVPQYLKRKL
KKMRLDASTRAALKAKYNIIM*
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mRNA from alignment at H-paniculata_contig13324:1495..2010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13324.2080.1 ID=mRNA_H-paniculata_contig13324.2080.1|Name=mRNA_H-paniculata_contig13324.2080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=516bp|location=Sequence derived from alignment at H-paniculata_contig13324:1495..2010+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGCGAGGGACGGCAAGATGGGGGAAAATGCCGGGAGTTCGAGCGCGG CGATTACTTGCTGACAGCGAGGGTCCGTAAGCTTGGAACCACCCCGAAAT GGTTCGGGACGTGGACGGGCCCGTGGCGGATCGTTACCGCCGGTTCTGCG CACGTCTACACTGTGGGAGACATTGTGACGGGGGCCAAGAATGAGGTCCA CGTCGTCCGGGTGCGGCCGTACGCTGACGCTTCCCTGGTCGTGGGGAAGG ACGTTCATGCCGTGTTCGCTGCGGCGCAACACCAAGGAGAGTTCCAGATC GTCGACATCCTCGACATCGGCGAGAGCCCTGACAAGAAGGGGGAGTACGT AGTGCTAGTGGAATGGGTGGGGCTGGGTGCTGAGGAGCACAGCTGGGAGC CGGTGACTGTCATCCACGAGGACGTGCCGCAGTACCTGAAGCGCAAGCTG AAGAAGATGCGGCTGGATGCGAGCACCCGGGCCGCCCTCAAGGCAAAGTA CAACATTATAATGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig13324:1495..2010+

>mRNA_H-paniculata_contig13324.2080.1 ID=mRNA_H-paniculata_contig13324.2080.1|Name=mRNA_H-paniculata_contig13324.2080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig13324:1495..2010+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGCGAGGGACGGCAAGATGGGGGAAAATGCCGGGAGTTCGAGCGCGG
CGATTACTTGCTGACAGCGAGGGTCCGTAAGCTTGGAACCACCCCGAAAT
GGTTCGGGACGTGGACGGGCCCGTGGCGGATCGTTACCGCCGGTTCTGCG
CACGTCTACACTGTGGGAGACATTGTGACGGGGGCCAAGAATGAGGTCCA
CGTCGTCCGGGTGCGGCCGTACGCTGACGCTTCCCTGGTCGTGGGGAAGG
ACGTTCATGCCGTGTTCGCTGCGGCGCAACACCAAGGAGAGTTCCAGATC
GTCGACATCCTCGACATCGGCGAGAGCCCTGACAAGAAGGGGGAGTACGT
AGTGCTAGTGGAATGGGTGGGGCTGGGTGCTGAGGAGCACAGCTGGGAGC
CGGTGACTGTCATCCACGAGGACGTGCCGCAGTACCTGAAGCGCAAGCTG
AAGAAGATGCGGCTGGATGCGAGCACCCGGGCCGCCCTCAAGGCAAAGTA
CAACATTATAATGTAGGCAAGCGAGGGACGGCAAGATGGGGGAAAATGCC
GGGAGTTCGAGCGCGGCGATTACTTGCTGACAGCGAGGGTCCGTAAGCTT
GGAACCACCCCGAAATGGTTCGGGACGTGGACGGGCCCGTGGCGGATCGT
TACCGCCGGTTCTGCGCACGTCTACACTGTGGGAGACATTGTGACGGGGG
CCAAGAATGAGGTCCACGTCGTCCGGGTGCGGCCGTACGCTGACGCTTCC
CTGGTCGTGGGGAAGGACGTTCATGCCGTGTTCGCTGCGGCGCAACACCA
AGGAGAGTTCCAGATCGTCGACATCCTCGACATCGGCGAGAGCCCTGACA
AGAAGGGGGAGTACGTAGTGCTAGTGGAATGGGTGGGGCTGGGTGCTGAG
GAGCACAGCTGGGAGCCGGTGACTGTCATCCACGAGGACGTGCCGCAGTA
CCTGAAGCGCAAGCTGAAGAAGATGCGGCTGGATGCGAGCACCCGGGCCG
CCCTCAAGGCAAAGTACAACATTATAATGTAG
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