Homology
BLAST of mRNA_H-paniculata_contig955.17271.1 vs. uniprot
Match:
A0A6H5JR01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR01_9PHAE)
HSP 1 Score: 53.1 bits (126), Expect = 1.790e-6
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1
Query: 22 SAEAVGCVLHLDPTWL-DLVRHLTDHNLVDERKEGQLKEELEEYGR 156
S+ A ++H+DP WL DLVR +TDHNLVD++ E ++ +EL EYGR
Sbjct: 150 SSPAQSDMIHVDPRWLIDLVRRVTDHNLVDKKNEHEILKELLEYGR 195
BLAST of mRNA_H-paniculata_contig955.17271.1 vs. uniprot
Match:
D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI)
HSP 1 Score: 50.4 bits (119), Expect = 1.640e-5
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 1
Query: 22 SAEAVGCVLHLDPTWL-DLVRHLTDHNLVDERKEGQLKEELEEYGR 156
S+ A ++H+DP WL +LVR +TDHNLVD++K+ ++ +EL EY R
Sbjct: 1596 SSPAQSDMIHVDPRWLIELVRRVTDHNLVDKKKQNKILQELLEYDR 1641
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig955.17271.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.79e-6 / Id = 54.35 Expect = 1.64e-5 / Id = 50.00 Sequence A0A6H5JR01_9PHAE D8LK68_ECTSI
Match Name E-value Identity Description
A0A6H5JR01_9PHAE 1.790e-6 54.35 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D8LK68_ECTSI 1.640e-5 50.00 LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 204 Cds size 204 Stop 1 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig955.17271.1
>prot_H-paniculata_contig955.17271.1 ID=prot_H-paniculata_contig955.17271.1|Name=mRNA_H-paniculata_contig955.17271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
LLLDNSVSAEAVGCVLHLDPTWLDLVRHLTDHNLVDERKEGQLKEELEEY back to top mRNA from alignment at H-paniculata_contig955:9893..10096+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig955.17271.1 ID=mRNA_H-paniculata_contig955.17271.1|Name=mRNA_H-paniculata_contig955.17271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig955:9893..10096+ (Halopteris paniculata Hal_grac_a_UBK monoicous)CTCTTGCTGGATAATTCAGTTTCAGCCGAAGCGGTAGGTTGTGTGCTACA
TCTGGACCCGACTTGGTTGGATCTTGTACGTCACTTGACGGACCACAACC
TTGTGGACGAACGTAAAGAAGGCCAGCTCAAGGAAGAGCTGGAGGAGTAC
GGCCGAGAGCTCACCCTCCCATTAGAGTTGCAGCCTGTGGATCAGCACAT
GTAA back to top Coding sequence (CDS) from alignment at H-paniculata_contig955:9893..10096+
>mRNA_H-paniculata_contig955.17271.1 ID=mRNA_H-paniculata_contig955.17271.1|Name=mRNA_H-paniculata_contig955.17271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig955:9893..10096+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top