mRNA_H-paniculata_contig955.17271.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig955.17271.1
Unique NamemRNA_H-paniculata_contig955.17271.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig955.17271.1 vs. uniprot
Match: A0A6H5JR01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR01_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.790e-6
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   22 SAEAVGCVLHLDPTWL-DLVRHLTDHNLVDERKEGQLKEELEEYGR 156
            S+ A   ++H+DP WL DLVR +TDHNLVD++ E ++ +EL EYGR
Sbjct:  150 SSPAQSDMIHVDPRWLIDLVRRVTDHNLVDKKNEHEILKELLEYGR 195
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BLAST of mRNA_H-paniculata_contig955.17271.1 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 1.640e-5
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   22 SAEAVGCVLHLDPTWL-DLVRHLTDHNLVDERKEGQLKEELEEYGR 156
            S+ A   ++H+DP WL +LVR +TDHNLVD++K+ ++ +EL EY R
Sbjct: 1596 SSPAQSDMIHVDPRWLIELVRRVTDHNLVDKKKQNKILQELLEYDR 1641
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig955.17271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JR01_9PHAE1.790e-654.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK68_ECTSI1.640e-550.00LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig955contigH-paniculata_contig955:9893..10096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.9885821-CDS-H-paniculata_contig955:9892..100961622931185.9885821-CDS-H-paniculata_contig955:9892..10096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig955 9893..10096 +
1691481629.3376567-CDS-H-paniculata_contig955:9892..100961691481629.3376567-CDS-H-paniculata_contig955:9892..10096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig955 9893..10096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig955.17271.1prot_H-paniculata_contig955.17271.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig955 9893..10096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig955.17271.1

>prot_H-paniculata_contig955.17271.1 ID=prot_H-paniculata_contig955.17271.1|Name=mRNA_H-paniculata_contig955.17271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
LLLDNSVSAEAVGCVLHLDPTWLDLVRHLTDHNLVDERKEGQLKEELEEY
GRELTLPLELQPVDQHM*
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mRNA from alignment at H-paniculata_contig955:9893..10096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig955.17271.1 ID=mRNA_H-paniculata_contig955.17271.1|Name=mRNA_H-paniculata_contig955.17271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig955:9893..10096+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTTGCTGGATAATTCAGTTTCAGCCGAAGCGGTAGGTTGTGTGCTACA
TCTGGACCCGACTTGGTTGGATCTTGTACGTCACTTGACGGACCACAACC
TTGTGGACGAACGTAAAGAAGGCCAGCTCAAGGAAGAGCTGGAGGAGTAC
GGCCGAGAGCTCACCCTCCCATTAGAGTTGCAGCCTGTGGATCAGCACAT
GTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig955:9893..10096+

>mRNA_H-paniculata_contig955.17271.1 ID=mRNA_H-paniculata_contig955.17271.1|Name=mRNA_H-paniculata_contig955.17271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig955:9893..10096+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTTGCTGGATAATTCAGTTTCAGCCGAAGCGGTAGGTTGTGTGCTACA
TCTGGACCCGACTTGGTTGGATCTTGTACGTCACTTGACGGACCACAACC
TTGTGGACGAACGTAAAGAAGGCCAGCTCAAGGAAGAGCTGGAGGAGTAC
GGCCGAGAGCTCACCCTCCCATTAGAGTTGCAGCCTGTGGATCAGCACAT
GTAACTCTTGCTGGATAATTCAGTTTCAGCCGAAGCGGTAGGTTGTGTGC
TACATCTGGACCCGACTTGGTTGGATCTTGTACGTCACTTGACGGACCAC
AACCTTGTGGACGAACGTAAAGAAGGCCAGCTCAAGGAAGAGCTGGAGGA
GTACGGCCGAGAGCTCACCCTCCCATTAGAGTTGCAGCCTGTGGATCAGC
ACATGTAA
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