mRNA_H-paniculata_contig947.17217.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	69.7
Seed ortholog evalue	3.2e-09
Seed eggNOG ortholog	2880.D7FKR4
KEGG ko	ko:K15032
Hectar predicted targeting category	other localisation
EggNOG free text desc.	termination of mitochondrial transcription
EggNOG OGs	KOG1267@1,KOG1267@2759
Ec32 ortholog description	Mitochodrial transcription termination factor
Ec32 ortholog	Ec-21_001830.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03012,ko03029
Exons	8
Model size	1371
Cds size	1086
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig947.17217.1	prot_H-paniculata_contig947.17217.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig947 4910..7468 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931177.3243043-UTR-H-paniculata_contig947:4633..4909	1622931177.3243043-UTR-H-paniculata_contig947:4633..4909	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig947 4634..4909 -
1691481625.2438977-UTR-H-paniculata_contig947:4633..4909	1691481625.2438977-UTR-H-paniculata_contig947:4633..4909	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig947 4634..4909 -
1622931177.4897811-UTR-H-paniculata_contig947:7468..7477	1622931177.4897811-UTR-H-paniculata_contig947:7468..7477	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig947 7469..7477 -
1691481625.3314915-UTR-H-paniculata_contig947:7468..7477	1691481625.3314915-UTR-H-paniculata_contig947:7468..7477	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig947 7469..7477 -

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig947:4634..7477-
coding sequence from alignment at H-paniculata_contig947:4634..7477-

protein sequence of mRNA_H-paniculata_contig947.17217.1

>prot_H-paniculata_contig947.17217.1 ID=prot_H-paniculata_contig947.17217.1|Name=mRNA_H-paniculata_contig947.17217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=362bp
MWKFAYFEGEVGVSRLQLVKLVERQPQILALDLHHRIRPNVAYLKNELNI
PSERLPGILVAVPGLLWFNIEDTLKPKVRWFTIELMLRRNQLRKIILQHP
QVLTLSLEKNVGPKASWLKIVFGIDDLALRDMIVRHPALLLYSIETVIKP
KMSFLRDEVGLEEIRLRKLLVTTPVLFSYNVETMRSKVSYLQEELQFDCE
DVARVISRTPQLLGYRVASMKAKVAFIMQVLHTNSEETSKIISGSPTVLN
LSIEKNLRLKIDLYVNELGGKPEDVRAAIVGTPSALGYSLTKRTRPRMQV
IRLLGIEPTFEDHFWHLTSYTSVRFNRWLETQVMENLGAERRGDAEVKSR
MKRYLSILHGN*

mRNA from alignment at H-paniculata_contig947:4634..7477-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig947.17217.1 ID=mRNA_H-paniculata_contig947.17217.1|Name=mRNA_H-paniculata_contig947.17217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2844bp|location=Sequence derived from alignment at H-paniculata_contig947:4634..7477- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGACGCTCATGTGGAAGTTCGCGTACTTTGAAGGAGAGGTGGGAGTGAG
CCGTCTTCAGCTGGTGAAACTCGTTGAACGGCAGCCTCAGATACTGGCGC
TGGATTTACATCATAGGATCCGGCCCAACGTGAGAGAGAACCACGGAGTA
TCGGAATGCTTGTGTCTTTTTGTCGTTCGCAGTTACCGATAAGCGCAAAC
GTTCCAACAACCAGGTTTGCACAGTTAGAGAACGTCCTTCAGTCTCCACC
ACGGCCTGTTTCAGCAAGATTCAATATTTTTCTTGAGTGTGTTGCTGTTA
TATTACCCCAAGCCACCACGAGCATTCGACGCCGTAGCCCGTTGTACGCT
CTCGTAATGTCAATGTGATCGAACGCAGGTTGCATATCTCAAGAATGAGC
TCAACATCCCGTCAGAACGCCTCCCGGGTATCCTCGTCGCTGTACCAGGG
TTGCTGTGGTTCAATATCGAAGACACCCTTAAGCCAAAGGTACACATTGT
GTATACTTTGTAGTCATTGCTTTCCTTGCTACACTAGGTACACTGCATGG
GGCCCCTAACTTGTTCTAACGGCATAAGCCCAACCCAGTGAACGGTTTCG
TGAGAGTGTAGTGGCGATCGGAGGGTTGCATTATGCTGTTCACTTCATGT
TTGTGCCCTAGCTTGGCGCTGAGAACTGACCGGTAATCCCATTATTGAAT
ACCTTTCTGAAAGAGAAAACTTATTTTGATGCAATGGTTGTAGTGAAACT
TCAAGCGTCGTCTCCTCCCGTGTGCGTTGGTAAACGCTTGCGAGGCATCC
CTCGTCCTCGTCTAATGCGATCCCCTTGCGCGATGATCACCCAATGTCAT
TCATGACAGGTTAGATGGTTCACCATCGAGCTCATGCTTCGAAGGAATCA
GCTGCGCAAGATTATTCTTCAACATCCTCAGGCAAGATACGGCGACTTGT
CGTAGATAATCGAATCGTGCTCATTGTCAAGTTATCGGCGGGATCGTTGA
AATCGTTGTCGTGTGGTTTTCTGTCTCCAATTTGGGTGCATTCGTGTTTT
GATACTTGACAGGTGTTGACTCTTAGTCTGGAGAAGAATGTGGGTCCGAA
GGCGTCCTGGCTGAAAATTGTCTTTGGGATCGATGACTTGGTGAGATGGG
GTGTACACCGCTGCTGCCGCAATAATTCCTGCTGATATAGTAGGTATAAT
CTTGTGACACGTTAGATGCCACTCTCGCCTACTGATGCTTTTCACGAGGC
GAATGCTGAAACATTGACAATCAAAACTGAAAAACGTTGTTTGTGACCCC
TCATGCACACATTTATTGAAAACCGATGCAACACCCACCAGCGGTACACA
CGTCCTGTTCCCCAACAGGCGTTGCGTGATATGATCGTGAGGCACCCTGC
CCTCCTGCTGTACAGTATTGAGACTGTCATCAAGCCCAAGGTGAGGTAAG
CGACTTAGCCACGACTCTGAATGTCACTGCAATCAATGGAACATTTCCGA
AGCTGCACGTCAACTAGGTCCGAGCTAGAACTTTTCTTCTTGGAGAATAA
ACAAAGTGCCACTGGATGCTCTACCCGGTGCTTGCTTCTTTTCCATCCTC
TAGATGAGCTTCCTCAGGGACGAGGTCGGATTGGAAGAGATACGACTACG
AAAATTGCTGGTGACAACACCTGTGCTATTCAGCTACAACGTTGAAACTA
TGCGCTCCAAGGTGTCATATTTGCAAGAGGAGCTTCAATTCGACTGCGAA
GACGTGAGCACGATTACGTCTGTTTATTATCTAAGTCTAGCTCGCTGTAC
CTATCTGCTATGCGGGGAAGACACAACCCATTTCCTTGACAGGTGGTATA
TTCACTGAAGCCTCTACCCATTTCATGGGTCTGGTCTCAGCAGCGTCAAC
GTGAAGCTGAGCTGTCACGCTTTTTATCGTTGTTTTCATCCAGGTTGCAA
GAGTGATCAGTCGTACTCCGCAGCTGCTGGGGTACCGAGTGGCCAGCATG
AAGGCCAAGGTAGCCTTCATTATGCAGGTGTGTTTGTCAATGCTCCTAAC
CATGTCCCTCAGTACAGTACGACAGTACAGTGTTCGCGTATCCCTACTAG
ATATGTTACGTCGATATTCGATACACGTCTATAACCTTCAATTACTCAAT
CTCGCTGCTACATGTGCAGGTACTCCATACAAACAGCGAAGAAACGAGCA
AAATTATTTCGGGAAGCCCGACAGTACTGAATCTTAGCATCGAGAAAAAC
TTGCGTTTAAAGATTGACCTGTACGTGAATGAGCTGGGCGGCAAGCCGGA
AGATGTACGGGCGGCAATCGTCGGAACCCCGTCAGCTTTGGGATACAGCC
TGACGAAGAGGACACGACCTCGGATGCAGGTCATACGATTACTCGGCATA
GAACCCACCTTCGAAGATCACTTTTGGCACCTAACAAGCTACACATCTGT
CAGATTCAACAGATGGCTAGAAACGCAAGTGATGGAAAATCTAGGAGCAG
AGCGGAGAGGAGACGCGGAGGTCAAAAGTAGGATGAAACGCTATTTGAGC
ATTCTCCATGGCAACTGACACACATTTTGAGTCGACGAGGTGCAGGTTTG
TCTATAGGGCTTGATTGTTTTGCAAGTTGCAGCTTGTCTCTTGAGCTATC
TATATCGTAGAAGATGACATTTTGCCGTCAATAGTGATTATGGTTAGCTT
TTTTCAATATGATCTATCTATTCTAGATTTGTTTACCGTTAATGACATAC
GCCACCCTCCGGTATATGCTAATTTATGTATTTACTGCGTTATTATTCGA
TATTTTTCGTAAGTATTTTCCCGATATATTCCCGTGAATGCAGT

Coding sequence (CDS) from alignment at H-paniculata_contig947:4634..7477-

>mRNA_H-paniculata_contig947.17217.1 ID=mRNA_H-paniculata_contig947.17217.1|Name=mRNA_H-paniculata_contig947.17217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2172bp|location=Sequence derived from alignment at H-paniculata_contig947:4634..7477- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGAAGTTCGCGTACTTTGAAGGAGAGGTGGGAGTGAGCCGTCTTCA
GCTGGTGAAACTCGTTGAACGGCAGCCTCAGATACTGGCGCTGGATTTAC
ATCATAGGATCCGGCCCAACATGTGGAAGTTCGCGTACTTTGAAGGAGAG
GTGGGAGTGAGCCGTCTTCAGCTGGTGAAACTCGTTGAACGGCAGCCTCA
GATACTGGCGCTGGATTTACATCATAGGATCCGGCCCAACGTTGCATATC
TCAAGAATGAGCTCAACATCCCGTCAGAACGCCTCCCGGGTATCCTCGTC
GCTGTACCAGGGTTGCTGTGGTTCAATATCGAAGACACCCTTAAGCCAAA
GGTTGCATATCTCAAGAATGAGCTCAACATCCCGTCAGAACGCCTCCCGG
GTATCCTCGTCGCTGTACCAGGGTTGCTGTGGTTCAATATCGAAGACACC
CTTAAGCCAAAGGTTAGATGGTTCACCATCGAGCTCATGCTTCGAAGGAA
TCAGCTGCGCAAGATTATTCTTCAACATCCTCAGGTTAGATGGTTCACCA
TCGAGCTCATGCTTCGAAGGAATCAGCTGCGCAAGATTATTCTTCAACAT
CCTCAGGTGTTGACTCTTAGTCTGGAGAAGAATGTGGGTCCGAAGGCGTC
CTGGCTGAAAATTGTCTTTGGGATCGATGACTTGGTGTTGACTCTTAGTC
TGGAGAAGAATGTGGGTCCGAAGGCGTCCTGGCTGAAAATTGTCTTTGGG
ATCGATGACTTGGCGTTGCGTGATATGATCGTGAGGCACCCTGCCCTCCT
GCTGTACAGTATTGAGACTGTCATCAAGCCCAAGGCGTTGCGTGATATGA
TCGTGAGGCACCCTGCCCTCCTGCTGTACAGTATTGAGACTGTCATCAAG
CCCAAGATGAGCTTCCTCAGGGACGAGGTCGGATTGGAAGAGATACGACT
ACGAAAATTGCTGGTGACAACACCTGTGCTATTCAGCTACAACGTTGAAA
CTATGCGCTCCAAGGTGTCATATTTGCAAGAGGAGCTTCAATTCGACTGC
GAAGACATGAGCTTCCTCAGGGACGAGGTCGGATTGGAAGAGATACGACT
ACGAAAATTGCTGGTGACAACACCTGTGCTATTCAGCTACAACGTTGAAA
CTATGCGCTCCAAGGTGTCATATTTGCAAGAGGAGCTTCAATTCGACTGC
GAAGACGTTGCAAGAGTGATCAGTCGTACTCCGCAGCTGCTGGGGTACCG
AGTGGCCAGCATGAAGGCCAAGGTAGCCTTCATTATGCAGGTTGCAAGAG
TGATCAGTCGTACTCCGCAGCTGCTGGGGTACCGAGTGGCCAGCATGAAG
GCCAAGGTAGCCTTCATTATGCAGGTACTCCATACAAACAGCGAAGAAAC
GAGCAAAATTATTTCGGGAAGCCCGACAGTACTGAATCTTAGCATCGAGA
AAAACTTGCGTTTAAAGATTGACCTGTACGTGAATGAGCTGGGCGGCAAG
CCGGAAGATGTACGGGCGGCAATCGTCGGAACCCCGTCAGCTTTGGGATA
CAGCCTGACGAAGAGGACACGACCTCGGATGCAGGTCATACGATTACTCG
GCATAGAACCCACCTTCGAAGATCACTTTTGGCACCTAACAAGCTACACA
TCTGTCAGATTCAACAGATGGCTAGAAACGCAAGTGATGGAAAATCTAGG
AGCAGAGCGGAGAGGAGACGCGGAGGTCAAAAGTAGGATGAAACGCTATT
TGAGCATTCTCCATGGCAACTGAGTACTCCATACAAACAGCGAAGAAACG
AGCAAAATTATTTCGGGAAGCCCGACAGTACTGAATCTTAGCATCGAGAA
AAACTTGCGTTTAAAGATTGACCTGTACGTGAATGAGCTGGGCGGCAAGC
CGGAAGATGTACGGGCGGCAATCGTCGGAACCCCGTCAGCTTTGGGATAC
AGCCTGACGAAGAGGACACGACCTCGGATGCAGGTCATACGATTACTCGG
CATAGAACCCACCTTCGAAGATCACTTTTGGCACCTAACAAGCTACACAT
CTGTCAGATTCAACAGATGGCTAGAAACGCAAGTGATGGAAAATCTAGGA
GCAGAGCGGAGAGGAGACGCGGAGGTCAAAAGTAGGATGAAACGCTATTT
GAGCATTCTCCATGGCAACTGA

mRNA_H-paniculata_contig947.17217.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

ZOOM

x 1

POSITION

0