mRNA_H-paniculata_contig947.17217.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig947.17217.1
Unique NamemRNA_H-paniculata_contig947.17217.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig947.17217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig947contigH-paniculata_contig947:4634..7477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue3.2e-09
Seed eggNOG ortholog2880.D7FKR4
KEGG koko:K15032
Hectar predicted targeting categoryother localisation
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-21_001830.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons8
Model size1371
Cds size1086
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig947.17217.1prot_H-paniculata_contig947.17217.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig947 4910..7468 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.3243043-UTR-H-paniculata_contig947:4633..49091622931177.3243043-UTR-H-paniculata_contig947:4633..4909Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig947 4634..4909 -
1691481625.2438977-UTR-H-paniculata_contig947:4633..49091691481625.2438977-UTR-H-paniculata_contig947:4633..4909Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig947 4634..4909 -
1622931177.4897811-UTR-H-paniculata_contig947:7468..74771622931177.4897811-UTR-H-paniculata_contig947:7468..7477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig947 7469..7477 -
1691481625.3314915-UTR-H-paniculata_contig947:7468..74771691481625.3314915-UTR-H-paniculata_contig947:7468..7477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig947 7469..7477 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.3392956-CDS-H-paniculata_contig947:4909..53081622931177.3392956-CDS-H-paniculata_contig947:4909..5308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 4910..5308 -
1691481625.2539675-CDS-H-paniculata_contig947:4909..53081691481625.2539675-CDS-H-paniculata_contig947:4909..5308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 4910..5308 -
1622931177.357436-CDS-H-paniculata_contig947:5450..55341622931177.357436-CDS-H-paniculata_contig947:5450..5534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 5451..5534 -
1691481625.2679353-CDS-H-paniculata_contig947:5450..55341691481625.2679353-CDS-H-paniculata_contig947:5450..5534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 5451..5534 -
1622931177.3734233-CDS-H-paniculata_contig947:5724..58741622931177.3734233-CDS-H-paniculata_contig947:5724..5874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 5725..5874 -
1691481625.275835-CDS-H-paniculata_contig947:5724..58741691481625.275835-CDS-H-paniculata_contig947:5724..5874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 5725..5874 -
1622931177.4009318-CDS-H-paniculata_contig947:6037..61091622931177.4009318-CDS-H-paniculata_contig947:6037..6109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 6038..6109 -
1691481625.2835336-CDS-H-paniculata_contig947:6037..61091691481625.2835336-CDS-H-paniculata_contig947:6037..6109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 6038..6109 -
1622931177.4222665-CDS-H-paniculata_contig947:6337..64151622931177.4222665-CDS-H-paniculata_contig947:6337..6415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 6338..6415 -
1691481625.2918406-CDS-H-paniculata_contig947:6337..64151691481625.2918406-CDS-H-paniculata_contig947:6337..6415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 6338..6415 -
1622931177.4384224-CDS-H-paniculata_contig947:6546..66181622931177.4384224-CDS-H-paniculata_contig947:6546..6618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 6547..6618 -
1691481625.303356-CDS-H-paniculata_contig947:6546..66181691481625.303356-CDS-H-paniculata_contig947:6546..6618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 6547..6618 -
1622931177.4598234-CDS-H-paniculata_contig947:6988..70991622931177.4598234-CDS-H-paniculata_contig947:6988..7099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 6989..7099 -
1691481625.3126934-CDS-H-paniculata_contig947:6988..70991691481625.3126934-CDS-H-paniculata_contig947:6988..7099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 6989..7099 -
1622931177.4740257-CDS-H-paniculata_contig947:7348..74681622931177.4740257-CDS-H-paniculata_contig947:7348..7468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 7349..7468 -
1691481625.3214536-CDS-H-paniculata_contig947:7348..74681691481625.3214536-CDS-H-paniculata_contig947:7348..7468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig947 7349..7468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig947.17217.1

>prot_H-paniculata_contig947.17217.1 ID=prot_H-paniculata_contig947.17217.1|Name=mRNA_H-paniculata_contig947.17217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=362bp
MWKFAYFEGEVGVSRLQLVKLVERQPQILALDLHHRIRPNVAYLKNELNI
PSERLPGILVAVPGLLWFNIEDTLKPKVRWFTIELMLRRNQLRKIILQHP
QVLTLSLEKNVGPKASWLKIVFGIDDLALRDMIVRHPALLLYSIETVIKP
KMSFLRDEVGLEEIRLRKLLVTTPVLFSYNVETMRSKVSYLQEELQFDCE
DVARVISRTPQLLGYRVASMKAKVAFIMQVLHTNSEETSKIISGSPTVLN
LSIEKNLRLKIDLYVNELGGKPEDVRAAIVGTPSALGYSLTKRTRPRMQV
IRLLGIEPTFEDHFWHLTSYTSVRFNRWLETQVMENLGAERRGDAEVKSR
MKRYLSILHGN*
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mRNA from alignment at H-paniculata_contig947:4634..7477-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig947.17217.1 ID=mRNA_H-paniculata_contig947.17217.1|Name=mRNA_H-paniculata_contig947.17217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2844bp|location=Sequence derived from alignment at H-paniculata_contig947:4634..7477- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGACGCTCATGTGGAAGTTCGCGTACTTTGAAGGAGAGGTGGGAGTGAG
CCGTCTTCAGCTGGTGAAACTCGTTGAACGGCAGCCTCAGATACTGGCGC
TGGATTTACATCATAGGATCCGGCCCAACGTGAGAGAGAACCACGGAGTA
TCGGAATGCTTGTGTCTTTTTGTCGTTCGCAGTTACCGATAAGCGCAAAC
GTTCCAACAACCAGGTTTGCACAGTTAGAGAACGTCCTTCAGTCTCCACC
ACGGCCTGTTTCAGCAAGATTCAATATTTTTCTTGAGTGTGTTGCTGTTA
TATTACCCCAAGCCACCACGAGCATTCGACGCCGTAGCCCGTTGTACGCT
CTCGTAATGTCAATGTGATCGAACGCAGGTTGCATATCTCAAGAATGAGC
TCAACATCCCGTCAGAACGCCTCCCGGGTATCCTCGTCGCTGTACCAGGG
TTGCTGTGGTTCAATATCGAAGACACCCTTAAGCCAAAGGTACACATTGT
GTATACTTTGTAGTCATTGCTTTCCTTGCTACACTAGGTACACTGCATGG
GGCCCCTAACTTGTTCTAACGGCATAAGCCCAACCCAGTGAACGGTTTCG
TGAGAGTGTAGTGGCGATCGGAGGGTTGCATTATGCTGTTCACTTCATGT
TTGTGCCCTAGCTTGGCGCTGAGAACTGACCGGTAATCCCATTATTGAAT
ACCTTTCTGAAAGAGAAAACTTATTTTGATGCAATGGTTGTAGTGAAACT
TCAAGCGTCGTCTCCTCCCGTGTGCGTTGGTAAACGCTTGCGAGGCATCC
CTCGTCCTCGTCTAATGCGATCCCCTTGCGCGATGATCACCCAATGTCAT
TCATGACAGGTTAGATGGTTCACCATCGAGCTCATGCTTCGAAGGAATCA
GCTGCGCAAGATTATTCTTCAACATCCTCAGGCAAGATACGGCGACTTGT
CGTAGATAATCGAATCGTGCTCATTGTCAAGTTATCGGCGGGATCGTTGA
AATCGTTGTCGTGTGGTTTTCTGTCTCCAATTTGGGTGCATTCGTGTTTT
GATACTTGACAGGTGTTGACTCTTAGTCTGGAGAAGAATGTGGGTCCGAA
GGCGTCCTGGCTGAAAATTGTCTTTGGGATCGATGACTTGGTGAGATGGG
GTGTACACCGCTGCTGCCGCAATAATTCCTGCTGATATAGTAGGTATAAT
CTTGTGACACGTTAGATGCCACTCTCGCCTACTGATGCTTTTCACGAGGC
GAATGCTGAAACATTGACAATCAAAACTGAAAAACGTTGTTTGTGACCCC
TCATGCACACATTTATTGAAAACCGATGCAACACCCACCAGCGGTACACA
CGTCCTGTTCCCCAACAGGCGTTGCGTGATATGATCGTGAGGCACCCTGC
CCTCCTGCTGTACAGTATTGAGACTGTCATCAAGCCCAAGGTGAGGTAAG
CGACTTAGCCACGACTCTGAATGTCACTGCAATCAATGGAACATTTCCGA
AGCTGCACGTCAACTAGGTCCGAGCTAGAACTTTTCTTCTTGGAGAATAA
ACAAAGTGCCACTGGATGCTCTACCCGGTGCTTGCTTCTTTTCCATCCTC
TAGATGAGCTTCCTCAGGGACGAGGTCGGATTGGAAGAGATACGACTACG
AAAATTGCTGGTGACAACACCTGTGCTATTCAGCTACAACGTTGAAACTA
TGCGCTCCAAGGTGTCATATTTGCAAGAGGAGCTTCAATTCGACTGCGAA
GACGTGAGCACGATTACGTCTGTTTATTATCTAAGTCTAGCTCGCTGTAC
CTATCTGCTATGCGGGGAAGACACAACCCATTTCCTTGACAGGTGGTATA
TTCACTGAAGCCTCTACCCATTTCATGGGTCTGGTCTCAGCAGCGTCAAC
GTGAAGCTGAGCTGTCACGCTTTTTATCGTTGTTTTCATCCAGGTTGCAA
GAGTGATCAGTCGTACTCCGCAGCTGCTGGGGTACCGAGTGGCCAGCATG
AAGGCCAAGGTAGCCTTCATTATGCAGGTGTGTTTGTCAATGCTCCTAAC
CATGTCCCTCAGTACAGTACGACAGTACAGTGTTCGCGTATCCCTACTAG
ATATGTTACGTCGATATTCGATACACGTCTATAACCTTCAATTACTCAAT
CTCGCTGCTACATGTGCAGGTACTCCATACAAACAGCGAAGAAACGAGCA
AAATTATTTCGGGAAGCCCGACAGTACTGAATCTTAGCATCGAGAAAAAC
TTGCGTTTAAAGATTGACCTGTACGTGAATGAGCTGGGCGGCAAGCCGGA
AGATGTACGGGCGGCAATCGTCGGAACCCCGTCAGCTTTGGGATACAGCC
TGACGAAGAGGACACGACCTCGGATGCAGGTCATACGATTACTCGGCATA
GAACCCACCTTCGAAGATCACTTTTGGCACCTAACAAGCTACACATCTGT
CAGATTCAACAGATGGCTAGAAACGCAAGTGATGGAAAATCTAGGAGCAG
AGCGGAGAGGAGACGCGGAGGTCAAAAGTAGGATGAAACGCTATTTGAGC
ATTCTCCATGGCAACTGACACACATTTTGAGTCGACGAGGTGCAGGTTTG
TCTATAGGGCTTGATTGTTTTGCAAGTTGCAGCTTGTCTCTTGAGCTATC
TATATCGTAGAAGATGACATTTTGCCGTCAATAGTGATTATGGTTAGCTT
TTTTCAATATGATCTATCTATTCTAGATTTGTTTACCGTTAATGACATAC
GCCACCCTCCGGTATATGCTAATTTATGTATTTACTGCGTTATTATTCGA
TATTTTTCGTAAGTATTTTCCCGATATATTCCCGTGAATGCAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig947:4634..7477-

>mRNA_H-paniculata_contig947.17217.1 ID=mRNA_H-paniculata_contig947.17217.1|Name=mRNA_H-paniculata_contig947.17217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2172bp|location=Sequence derived from alignment at H-paniculata_contig947:4634..7477- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGAAGTTCGCGTACTTTGAAGGAGAGGTGGGAGTGAGCCGTCTTCA
GCTGGTGAAACTCGTTGAACGGCAGCCTCAGATACTGGCGCTGGATTTAC
ATCATAGGATCCGGCCCAACATGTGGAAGTTCGCGTACTTTGAAGGAGAG
GTGGGAGTGAGCCGTCTTCAGCTGGTGAAACTCGTTGAACGGCAGCCTCA
GATACTGGCGCTGGATTTACATCATAGGATCCGGCCCAACGTTGCATATC
TCAAGAATGAGCTCAACATCCCGTCAGAACGCCTCCCGGGTATCCTCGTC
GCTGTACCAGGGTTGCTGTGGTTCAATATCGAAGACACCCTTAAGCCAAA
GGTTGCATATCTCAAGAATGAGCTCAACATCCCGTCAGAACGCCTCCCGG
GTATCCTCGTCGCTGTACCAGGGTTGCTGTGGTTCAATATCGAAGACACC
CTTAAGCCAAAGGTTAGATGGTTCACCATCGAGCTCATGCTTCGAAGGAA
TCAGCTGCGCAAGATTATTCTTCAACATCCTCAGGTTAGATGGTTCACCA
TCGAGCTCATGCTTCGAAGGAATCAGCTGCGCAAGATTATTCTTCAACAT
CCTCAGGTGTTGACTCTTAGTCTGGAGAAGAATGTGGGTCCGAAGGCGTC
CTGGCTGAAAATTGTCTTTGGGATCGATGACTTGGTGTTGACTCTTAGTC
TGGAGAAGAATGTGGGTCCGAAGGCGTCCTGGCTGAAAATTGTCTTTGGG
ATCGATGACTTGGCGTTGCGTGATATGATCGTGAGGCACCCTGCCCTCCT
GCTGTACAGTATTGAGACTGTCATCAAGCCCAAGGCGTTGCGTGATATGA
TCGTGAGGCACCCTGCCCTCCTGCTGTACAGTATTGAGACTGTCATCAAG
CCCAAGATGAGCTTCCTCAGGGACGAGGTCGGATTGGAAGAGATACGACT
ACGAAAATTGCTGGTGACAACACCTGTGCTATTCAGCTACAACGTTGAAA
CTATGCGCTCCAAGGTGTCATATTTGCAAGAGGAGCTTCAATTCGACTGC
GAAGACATGAGCTTCCTCAGGGACGAGGTCGGATTGGAAGAGATACGACT
ACGAAAATTGCTGGTGACAACACCTGTGCTATTCAGCTACAACGTTGAAA
CTATGCGCTCCAAGGTGTCATATTTGCAAGAGGAGCTTCAATTCGACTGC
GAAGACGTTGCAAGAGTGATCAGTCGTACTCCGCAGCTGCTGGGGTACCG
AGTGGCCAGCATGAAGGCCAAGGTAGCCTTCATTATGCAGGTTGCAAGAG
TGATCAGTCGTACTCCGCAGCTGCTGGGGTACCGAGTGGCCAGCATGAAG
GCCAAGGTAGCCTTCATTATGCAGGTACTCCATACAAACAGCGAAGAAAC
GAGCAAAATTATTTCGGGAAGCCCGACAGTACTGAATCTTAGCATCGAGA
AAAACTTGCGTTTAAAGATTGACCTGTACGTGAATGAGCTGGGCGGCAAG
CCGGAAGATGTACGGGCGGCAATCGTCGGAACCCCGTCAGCTTTGGGATA
CAGCCTGACGAAGAGGACACGACCTCGGATGCAGGTCATACGATTACTCG
GCATAGAACCCACCTTCGAAGATCACTTTTGGCACCTAACAAGCTACACA
TCTGTCAGATTCAACAGATGGCTAGAAACGCAAGTGATGGAAAATCTAGG
AGCAGAGCGGAGAGGAGACGCGGAGGTCAAAAGTAGGATGAAACGCTATT
TGAGCATTCTCCATGGCAACTGAGTACTCCATACAAACAGCGAAGAAACG
AGCAAAATTATTTCGGGAAGCCCGACAGTACTGAATCTTAGCATCGAGAA
AAACTTGCGTTTAAAGATTGACCTGTACGTGAATGAGCTGGGCGGCAAGC
CGGAAGATGTACGGGCGGCAATCGTCGGAACCCCGTCAGCTTTGGGATAC
AGCCTGACGAAGAGGACACGACCTCGGATGCAGGTCATACGATTACTCGG
CATAGAACCCACCTTCGAAGATCACTTTTGGCACCTAACAAGCTACACAT
CTGTCAGATTCAACAGATGGCTAGAAACGCAAGTGATGGAAAATCTAGGA
GCAGAGCGGAGAGGAGACGCGGAGGTCAAAAGTAGGATGAAACGCTATTT
GAGCATTCTCCATGGCAACTGA
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