Homology
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Match:
D7FIP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP3_ECTSI)
HSP 1 Score: 216 bits (550), Expect = 4.320e-63
Identity = 143/285 (50.18%), Postives = 174/285 (61.05%), Query Frame = 1
Query: 70 IAGLLGCEKSTGFIPATHRL----AACRP----ITYP---SPSTCCMVSKEMSRDDGLNSRTTHSRPASRRNNSLRDAAAACLATATILSSCMPPDATALGFSSTAG-----DGGSGSIQKRHGAPITLVLSEEESATIAPGAISSGEPTDVPSLLSELKGGRDAKATLGTMIKINDIVDADEDAVLEDSVAKQNLVKGLIDKRRARGQAWDDDTEVAFGILKRKLDPFNVVLLRPYLQIAPFLGGTYYLAIFFVQQKFRGFFPFAYFAAVAVFVAPAAILVLNN 876
+ G L C T F+PA H L +A R +T+P SP + DD + T S + + R AAA CLATA ILSS +P A S + G DGG GS A + +VL++E + A G DV L+ ELK L +M+KIND+VD DED VLE+ A +++VKGLIDKRRA G+AWD +TE AFGILKRKLDPFNVVLLRPYL+IAPFLGG YYLA+FFVQQKFRGFFP+AYF AVAVFVAPA I++L N
Sbjct: 19 LVGFLSCHDGTAFVPAAHMLGGGMSAIRSTTSRLTFPAHRSPPGMTTSDGGLHHDD----KQTGEAKTSAWSGACRTAAA-CLATAAILSSSLPAGAA----SGSRGVRHHLDGGRGSSP----ANVLMVLADEGDFSSADGR------ADVSQLVLELKKADRPDTLLNSMVKINDVVDWDEDGVLENPFAAESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVILAN 284
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Match:
A0A836CGK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGK9_9STRA)
HSP 1 Score: 134 bits (338), Expect = 6.000e-34
Identity = 70/137 (51.09%), Postives = 97/137 (70.80%), Query Frame = 1
Query: 472 DVPSLLSELKGGRDAKATLGTMIKINDIVDADEDAVLEDSVAKQNLVKGLIDKRR-ARGQA-WDDDTEVAFGILKRKLDPFNVVLLRPYLQIAPFLGGTYYLAIFFVQQKFRGFFPFAYFAAVAVFVAPAAILVLNN 876
D+ L+EL +DA TL M+K+N+I+D+D D +E+ +A++ +V+GL K+R AR W DD + A+G+L+R+LDP+N LRPYL +APFLGG YYLA FFVQQKF FP AYF+ V VFVAP L++N+
Sbjct: 10 DMDGALAELSRAKDADQTLTAMVKVNEILDSD-DGTMENPLAREIVVRGLSAKKREARTTGEWRDDIDFAYGVLRRRLDPYNTFALRPYLGVAPFLGGLYYLAAFFVQQKFPEAFPLAYFSLVGVFVAPILFLLVNS 145
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Match:
A0A7S2XUD1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUD1_9STRA)
HSP 1 Score: 89.4 bits (220), Expect = 2.180e-16
Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 1
Query: 565 DEDAVLEDSVAKQNLVKGLIDKRRARGQAWDDDTEVAFGILKRKLDPFNVVLLRPYLQIAPFLGGTYYLAIFFVQQKFRGFFPFAYFAAVAVFVAPAAILVLNN 876
DED L ++ K+ +V+ + +K+ + W + E+ F ++KRKLDP+N V+L PYL++APF+GG YLA+ +VQQ F +AY F AP I+ L
Sbjct: 152 DEDGPLVETADKKLVVQKVREKKASSQAVWTAENEIEFSVIKRKLDPYNTVVLGPYLKVAPFVGGAIYLALIWVQQSLPRVFDYAYIVGALAFAAPIFIIALKG 255
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Match:
A0A6T5PVA6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PVA6_HETAK)
HSP 1 Score: 86.3 bits (212), Expect = 1.540e-15
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 1
Query: 508 RDAKATLGTMIKINDIVDADEDAVLEDSVAKQNLVKGLIDKRRARG-QAWDDDTEVAFGILKRKLDPFNVVLLRPYLQIAPFLGGTYYLAIFFVQQKFRG-FFPFAYFAAVAVFVAPAAILVLNN 876
+D + +G ++N + AD+D VL D ++ +V+ LI+K+ + + WD+ +GILKRKLDP+N V L YL +AP+LGG YLA+ VQ+ G F AY F APA +L L +
Sbjct: 107 KDTDSIIGLFAEVNRM--ADDDEVLIDPKDRKEVVRALIEKKANQADEKWDEQVYNGYGILKRKLDPYNTVALGGYLSVAPYLGGLLYLALVAVQRALPGRAFDVAYVVGALAFFAPAVLLALAS 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 4.32e-63 / Id = 50.18 Expect = 6.00e-34 / Id = 51.09 Expect = 2.18e-16 / Id = 39.42 Expect = 1.54e-15 / Id = 39.20 Sequence D7FIP3_ECTSI A0A836CGK9_9STRA A0A7S2XUD1_9STRA A0A6T5PVA6_HETAK back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 218.4 Seed ortholog evalue 4.4e-54 Seed eggNOG ortholog 2880.D7FIP3 Hectar predicted targeting category other localisation EggNOG OGs 2D01M@1,2SCF0@2759 Ec32 ortholog description conserved unknown protein Ec32 ortholog Ec-27_000520.1 Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 4 Model size 1508 Cds size 867 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9458.17205.1
>prot_H-paniculata_contig9458.17205.1 ID=prot_H-paniculata_contig9458.17205.1|Name=mRNA_H-paniculata_contig9458.17205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=289bp
MAGQWKDAHSLPRVWKALVIAGLLGCEKSTGFIPATHRLAACRPITYPSP back to top mRNA from alignment at H-paniculata_contig9458:5508..9416+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9458.17205.1 ID=mRNA_H-paniculata_contig9458.17205.1|Name=mRNA_H-paniculata_contig9458.17205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3909bp|location=Sequence derived from alignment at H-paniculata_contig9458:5508..9416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)AGTATTGAGGAT ATGGCGGGACAATGGAAGGATGCCCATTCGTTACCGAG
GGTATGGAAAGCACTAGTAATCGCAGGGTTGTTGGGGTGCGAGAAAAGCA
CTGGATTTATTCCAGCGACTCATCGACTTGCTGCCTGCAG GTGGGTACAT
CTGACCTCGCCATGGCACACATGATGGGTGATGGTATCATACATACGAGG
TACAAGTAGGGATCAGGTGTGTGTTTCGCGGCGCGAATAATGTCCGGTCA
GGCAACTCCGACGGTGTGCTGTGCTGGCTATGTTTTCTACATTCGCGGTG
CTGTACCGTAGCTTGTACGATAGCATGTCTCGTAGATGTGAAGTACAGTC
TTTTTGCGCACAATCCAACATGGCATGACGTGGAACATGGGTACAAGTCG
AATGGTGGAAAACATGTGCAGTATGCTGTACTGTACTCAACACACCAGTT
CAAATACTTCGTTCAGGCAAAATATTTCAACCTGCCGTCTGGCACCCATG
CTGTTTCAGAGCTAATTCGTTCGTGCTGAATGTGTTTGCCAGCGTTGTCC
CCGCTCACATCCACGCGCACTCACCACCTCCCGGTTCTACCACCATACCA
GGCCCATCACATACCCTTCCCCGTCAACGTGCTGCATGGTATCCAAAGAA
ATGTCAAGAGACGACGGCCTGAATAGCCGAACAACCCACAGCCGACCAGC
CTCCAGGAGGAACAATTCGTTGCGTGACGCAGCCGCCGCCTGCCTAGCAA
CCGCCACGATCCTCTCCTCCTGCATGCCCCCCGACGCTACCGCGCTGGGA
TTCTCTAGCACCGCCGGCGACGGAGGCTCCGGAAGCATCCAAAAACGACA
CGGGGCACCGATAACGCTTGTGCTATCTGAAGAGGAGTCCGCAACCATCG
CCCCTGGCGCAATCAGCAGCGGCGAGCCGACAGATGTGCCCAGCCTGTTG
TCGGAGTTGAAGGGGGGACGAGATGCGAAAGCGACGCTGGGCACGATGAT
CAAGATTAATGATATCGTGGATGCCGACGAGGACGCCGTACTGGAGGATT
CGGTCGCGAAACAG GTAAATTGTTTGCGAGCGCCATCTTGGAGGCCTCCA
ATTGAGATACCGAATGCAGGTGTATTTTCGCTTGTGGAGCACGCTTCGCG
CCTAGTTTGTCTAGGTCATACGCTGAGTGTTTTATGGGTCCAATTTACGG
CGCAATAGGTAACTCGTGTGGACCCACTATGGTTTGCCACCATTCCGTCT
GCTGAATGTTTCGCCGGAGTGAGGTGGAGGCTCTGTCACAACGGAAAAAT
AATCATTTCGCCAATGTGCCAACTTGACTCTGGCGTCACCATTCGAGACT
GTATGTCCCATTTTTTTCGTGTTATGTGCGGATTCTCATGAGTGGCGAAG
ATACTTGATTCGCGCGTGGAAAATACAGCAATGTGTCGGAGCATAGCGCT
ACATGAAAAAAAAAATGTTGTGATTGCTCAGCAATCTACTGAATTTCGCA
CACAATGGTCAAAATAACGTACAGGTCAAGTGAAGGGATAGCGTTGAAAA
CATGCAGTAGTGCAGGATAAATGTTGGGCACAGTACCATGTCATGCCATT
CGTCCTGGAATCGCGAGCTGTCCCTTTTGGACAAAGTACAGTTAGGATCA
GAGGTTGACAAAGCAGAATCACCGGGATGATTATCACGAAGATGTTATCT
CAGGAGTTGGTAACGATTATGAAAGCGGCATGAACTTCGCAGCGACCACT
CCAACGACCAGTTGACACTGAATACTCGGGGCTTCGAAGAAGTATATGTA
CGCGCAAGGGTGGAGAACTTATCGCGAGTATCAAATATCAAGGCCCCACT
ATGGACGGAGTATCAGCTACATCGTTATTGACAGTTTAAGCGTTGTTCGC
ATTGTTTGTCTCTCTTTACAGAACCTGGTGAAAGGGCTTATTGACAAGCG
AAGGGCCAGAGGCCAAGCGTGGGATGACGACACTGAG GTGCGCAAGCAAC
TGTAGGAATATGCTATGAAGGCGCGCGCAGCAAAATGACAATGGCGCCCC
GCCGATAGATTTATTGTGTCCAAGGTATGCAGTGTTCAACGTCAGTATCT
TCATTCTATTTTTTTCAAAGAACAGATGGCCACATCCTCGAATTCCTGAT
AGCCTCCGCACTTGGGGCGCAGTAGGTTCATAATTACGTCGTCGATAGAG
GATTGTCTGTGATTGTCGAATGTGTGGTAAGTATATGTCTGGTTACAAGT
CTGTTGCGCAAAGTGTCCGCTATGGTTCACTGTGGCGAGCGCACTTAGAT
CCACTGACTGTAGTAAGACCCCTCGATTTATCTGAATTAGTATCCGTTTT
GCCTTCGTGTGCCAATTTTTGCATTAGTTCGTCTCTTTTTCCCCCTTTCC
TTATTTCGGAGTACTTTTAGTGACATGCGATCCAGGTTCGTATCTTTGCA
GCAAAGTCTCTGTGATCGTAACCGGTGCGAAGTGAAACCAGCGCTTCTAC
AACATATGGCGTAGTACAGTATCAAACTAGGTTATTGTAGCCGCTGGGGA
ACGATGGCGAAATGAGTGCAAACAGATATTAACATCTGTGGAGCGCCTAT
AATTATGCTCCTTGCTCATGTGTACACATCGTGCTGAACTCATTTCGAAT
CGTTTGTTCAATTCAATGAACACGTTCATTCACTCGGATGGTCGTTTTTC
CTACCAGCACAATGTACTTCCATCAATGGGCAGGAGGGACAAGCTTCAGG
AACCCTAGTCCCAACAGGACATCGTTGAAGACCCGCACACGTGTTCTTTC
CGCACTCGCCATGCATTTAATATTGCATATGTTACAATATTAACTCGTGC
CAAATTAATGAGGGGGGAAGAAGGGGGGGCTACAATCACCCATATACATG
CTGCGCGCACGCTAGTGCACTCTCGGGGTGTTCAATCACACAGGAATTTG
CCATCGGCAACAAGATTTGACTGTGCTGGAGATGACACAGTTAACCGAAA
TAGTCTGTATTATTCTTCTTCGAGAACGTCTTGCAACTCAAGTCTACCTT
CTTTTTGTTCTCCTTTCCAGGTCGCGTTCGGCATCCTCAAGCGCAAGCTA
GATCCCTTCAATGTGGTGCTTCTGCGACCATACCTGCAAATCGCGCCATT
CCTTGGGGGCACGTACTACTTGGCCATATTTTTCGTCCAGCAGAAATTTC
GAGGATTTTTCCCGTTTGCGTATTTTGCCGCAGTTGCAGTTTTCGTTGCC
CCGGCGGCCATTCTGGTGTTGAATAATTAG CTTTGAGGTACTGATGAGTC
TTGGCACGGCTATAGCTCGATGGTATAGGGCCCGGTCGTAGTGCATTATA
GTGAAAAAAACGACCAGAACGTTGGTTGGGTTTGTGTTGGGAAAGGCACT
TTTTGATTTTGGAGCGCGGGTGAACACAGCCTGAAATGAGGGAGAGAGGA
ACCTAATCCAGTCCATTGACACGGCACTAAGGGAAAGAGCGGCGAAAACG
AAATGCGGGGGTAGCTAGGGGACACCCGAATACCATCCCTGGGTTGTCAC
TACAGAGATCAAAGGTGATTTTAGGCCAAAACGCACACCTTTGTCGTTGA
TATTCCATCTCTAAACCTCGACAAATTACTTCCTGTACAAGTATCTCACT
GTAGTCGGCCGACATCGTACCCAAGTGTTTTTGCAGATCAAAGGGTGGCG
GGAACAACTATACCCCCGCGAACGTTCCTATGTGCGTTTGATGAACATCT
GATCACAGTAGTACTGGGCATGTCCACAGTGCCATCGAGGGTGCAATATA
TGTCTTCAGCGATTGCAAATGACCAGAGGAGGCGTGAAACGGGGAAAAAC
AGCACCTTCTGGAAAAGACAGCAGCACCAACTATCTTGTTTTCGTTGTTC
AGGGGGTTT back to top Coding sequence (CDS) from alignment at H-paniculata_contig9458:5508..9416+
>mRNA_H-paniculata_contig9458.17205.1 ID=mRNA_H-paniculata_contig9458.17205.1|Name=mRNA_H-paniculata_contig9458.17205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at H-paniculata_contig9458:5508..9416+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top