mRNA_H-paniculata_contig9458.17205.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Match: D7FIP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP3_ECTSI) HSP 1 Score: 216 bits (550), Expect = 4.320e-63 Identity = 143/285 (50.18%), Postives = 174/285 (61.05%), Query Frame = 1 Query: 70 IAGLLGCEKSTGFIPATHRL----AACRP----ITYP---SPSTCCMVSKEMSRDDGLNSRTTHSRPASRRNNSLRDAAAACLATATILSSCMPPDATALGFSSTAG-----DGGSGSIQKRHGAPITLVLSEEESATIAPGAISSGEPTDVPSLLSELKGGRDAKATLGTMIKINDIVDADEDAVLEDSVAKQNLVKGLIDKRRARGQAWDDDTEVAFGILKRKLDPFNVVLLRPYLQIAPFLGGTYYLAIFFVQQKFRGFFPFAYFAAVAVFVAPAAILVLNN 876
+ G L C T F+PA H L +A R +T+P SP + DD + T S + + R AAA CLATA ILSS +P A S + G DGG GS A + +VL++E + A G DV L+ ELK L +M+KIND+VD DED VLE+ A +++VKGLIDKRRA G+AWD +TE AFGILKRKLDPFNVVLLRPYL+IAPFLGG YYLA+FFVQQKFRGFFP+AYF AVAVFVAPA I++L N
Sbjct: 19 LVGFLSCHDGTAFVPAAHMLGGGMSAIRSTTSRLTFPAHRSPPGMTTSDGGLHHDD----KQTGEAKTSAWSGACRTAAA-CLATAAILSSSLPAGAA----SGSRGVRHHLDGGRGSSP----ANVLMVLADEGDFSSADGR------ADVSQLVLELKKADRPDTLLNSMVKINDVVDWDEDGVLENPFAAESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVILAN 284
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Match: A0A836CGK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGK9_9STRA) HSP 1 Score: 134 bits (338), Expect = 6.000e-34 Identity = 70/137 (51.09%), Postives = 97/137 (70.80%), Query Frame = 1 Query: 472 DVPSLLSELKGGRDAKATLGTMIKINDIVDADEDAVLEDSVAKQNLVKGLIDKRR-ARGQA-WDDDTEVAFGILKRKLDPFNVVLLRPYLQIAPFLGGTYYLAIFFVQQKFRGFFPFAYFAAVAVFVAPAAILVLNN 876
D+ L+EL +DA TL M+K+N+I+D+D D +E+ +A++ +V+GL K+R AR W DD + A+G+L+R+LDP+N LRPYL +APFLGG YYLA FFVQQKF FP AYF+ V VFVAP L++N+
Sbjct: 10 DMDGALAELSRAKDADQTLTAMVKVNEILDSD-DGTMENPLAREIVVRGLSAKKREARTTGEWRDDIDFAYGVLRRRLDPYNTFALRPYLGVAPFLGGLYYLAAFFVQQKFPEAFPLAYFSLVGVFVAPILFLLVNS 145
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Match: A0A7S2XUD1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUD1_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.180e-16 Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 1 Query: 565 DEDAVLEDSVAKQNLVKGLIDKRRARGQAWDDDTEVAFGILKRKLDPFNVVLLRPYLQIAPFLGGTYYLAIFFVQQKFRGFFPFAYFAAVAVFVAPAAILVLNN 876
DED L ++ K+ +V+ + +K+ + W + E+ F ++KRKLDP+N V+L PYL++APF+GG YLA+ +VQQ F +AY F AP I+ L
Sbjct: 152 DEDGPLVETADKKLVVQKVREKKASSQAVWTAENEIEFSVIKRKLDPYNTVVLGPYLKVAPFVGGAIYLALIWVQQSLPRVFDYAYIVGALAFAAPIFIIALKG 255
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Match: A0A6T5PVA6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PVA6_HETAK) HSP 1 Score: 86.3 bits (212), Expect = 1.540e-15 Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 1 Query: 508 RDAKATLGTMIKINDIVDADEDAVLEDSVAKQNLVKGLIDKRRARG-QAWDDDTEVAFGILKRKLDPFNVVLLRPYLQIAPFLGGTYYLAIFFVQQKFRG-FFPFAYFAAVAVFVAPAAILVLNN 876
+D + +G ++N + AD+D VL D ++ +V+ LI+K+ + + WD+ +GILKRKLDP+N V L YL +AP+LGG YLA+ VQ+ G F AY F APA +L L +
Sbjct: 107 KDTDSIIGLFAEVNRM--ADDDEVLIDPKDRKEVVRALIEKKANQADEKWDEQVYNGYGILKRKLDPYNTVALGGYLSVAPYLGGLLYLALVAVQRALPGRAFDVAYVVGALAFFAPAVLLALAS 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9458.17205.1 >prot_H-paniculata_contig9458.17205.1 ID=prot_H-paniculata_contig9458.17205.1|Name=mRNA_H-paniculata_contig9458.17205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=289bp MAGQWKDAHSLPRVWKALVIAGLLGCEKSTGFIPATHRLAACRPITYPSPback to top mRNA from alignment at H-paniculata_contig9458:5508..9416+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9458.17205.1 ID=mRNA_H-paniculata_contig9458.17205.1|Name=mRNA_H-paniculata_contig9458.17205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3909bp|location=Sequence derived from alignment at H-paniculata_contig9458:5508..9416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9458:5508..9416+ >mRNA_H-paniculata_contig9458.17205.1 ID=mRNA_H-paniculata_contig9458.17205.1|Name=mRNA_H-paniculata_contig9458.17205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at H-paniculata_contig9458:5508..9416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |