mRNA_H-paniculata_contig9458.17205.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Match: D7FIP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP3_ECTSI) HSP 1 Score: 216 bits (550), Expect = 4.320e-63 Identity = 143/285 (50.18%), Postives = 174/285 (61.05%), Query Frame = 1
Query: 70 IAGLLGCEKSTGFIPATHRL----AACRP----ITYP---SPSTCCMVSKEMSRDDGLNSRTTHSRPASRRNNSLRDAAAACLATATILSSCMPPDATALGFSSTAG-----DGGSGSIQKRHGAPITLVLSEEESATIAPGAISSGEPTDVPSLLSELKGGRDAKATLGTMIKINDIVDADEDAVLEDSVAKQNLVKGLIDKRRARGQAWDDDTEVAFGILKRKLDPFNVVLLRPYLQIAPFLGGTYYLAIFFVQQKFRGFFPFAYFAAVAVFVAPAAILVLNN 876
+ G L C T F+PA H L +A R +T+P SP + DD + T S + + R AAA CLATA ILSS +P A S + G DGG GS A + +VL++E + A G DV L+ ELK L +M+KIND+VD DED VLE+ A +++VKGLIDKRRA G+AWD +TE AFGILKRKLDPFNVVLLRPYL+IAPFLGG YYLA+FFVQQKFRGFFP+AYF AVAVFVAPA I++L N
Sbjct: 19 LVGFLSCHDGTAFVPAAHMLGGGMSAIRSTTSRLTFPAHRSPPGMTTSDGGLHHDD----KQTGEAKTSAWSGACRTAAA-CLATAAILSSSLPAGAA----SGSRGVRHHLDGGRGSSP----ANVLMVLADEGDFSSADGR------ADVSQLVLELKKADRPDTLLNSMVKINDVVDWDEDGVLENPFAAESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVILAN 284
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Match: A0A836CGK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGK9_9STRA) HSP 1 Score: 134 bits (338), Expect = 6.000e-34 Identity = 70/137 (51.09%), Postives = 97/137 (70.80%), Query Frame = 1
Query: 472 DVPSLLSELKGGRDAKATLGTMIKINDIVDADEDAVLEDSVAKQNLVKGLIDKRR-ARGQA-WDDDTEVAFGILKRKLDPFNVVLLRPYLQIAPFLGGTYYLAIFFVQQKFRGFFPFAYFAAVAVFVAPAAILVLNN 876
D+ L+EL +DA TL M+K+N+I+D+D D +E+ +A++ +V+GL K+R AR W DD + A+G+L+R+LDP+N LRPYL +APFLGG YYLA FFVQQKF FP AYF+ V VFVAP L++N+
Sbjct: 10 DMDGALAELSRAKDADQTLTAMVKVNEILDSD-DGTMENPLAREIVVRGLSAKKREARTTGEWRDDIDFAYGVLRRRLDPYNTFALRPYLGVAPFLGGLYYLAAFFVQQKFPEAFPLAYFSLVGVFVAPILFLLVNS 145
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Match: A0A7S2XUD1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUD1_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.180e-16 Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 1
Query: 565 DEDAVLEDSVAKQNLVKGLIDKRRARGQAWDDDTEVAFGILKRKLDPFNVVLLRPYLQIAPFLGGTYYLAIFFVQQKFRGFFPFAYFAAVAVFVAPAAILVLNN 876
DED L ++ K+ +V+ + +K+ + W + E+ F ++KRKLDP+N V+L PYL++APF+GG YLA+ +VQQ F +AY F AP I+ L
Sbjct: 152 DEDGPLVETADKKLVVQKVREKKASSQAVWTAENEIEFSVIKRKLDPYNTVVLGPYLKVAPFVGGAIYLALIWVQQSLPRVFDYAYIVGALAFAAPIFIIALKG 255
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Match: A0A6T5PVA6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PVA6_HETAK) HSP 1 Score: 86.3 bits (212), Expect = 1.540e-15 Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 1
Query: 508 RDAKATLGTMIKINDIVDADEDAVLEDSVAKQNLVKGLIDKRRARG-QAWDDDTEVAFGILKRKLDPFNVVLLRPYLQIAPFLGGTYYLAIFFVQQKFRG-FFPFAYFAAVAVFVAPAAILVLNN 876
+D + +G ++N + AD+D VL D ++ +V+ LI+K+ + + WD+ +GILKRKLDP+N V L YL +AP+LGG YLA+ VQ+ G F AY F APA +L L +
Sbjct: 107 KDTDSIIGLFAEVNRM--ADDDEVLIDPKDRKEVVRALIEKKANQADEKWDEQVYNGYGILKRKLDPYNTVALGGYLSVAPYLGGLLYLALVAVQRALPGRAFDVAYVVGALAFFAPAVLLALAS 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9458.17205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9458.17205.1 >prot_H-paniculata_contig9458.17205.1 ID=prot_H-paniculata_contig9458.17205.1|Name=mRNA_H-paniculata_contig9458.17205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=289bp MAGQWKDAHSLPRVWKALVIAGLLGCEKSTGFIPATHRLAACRPITYPSPback to top mRNA from alignment at H-paniculata_contig9458:5508..9416+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9458.17205.1 ID=mRNA_H-paniculata_contig9458.17205.1|Name=mRNA_H-paniculata_contig9458.17205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3909bp|location=Sequence derived from alignment at H-paniculata_contig9458:5508..9416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9458:5508..9416+ >mRNA_H-paniculata_contig9458.17205.1 ID=mRNA_H-paniculata_contig9458.17205.1|Name=mRNA_H-paniculata_contig9458.17205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at H-paniculata_contig9458:5508..9416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |