Homology
BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Match:
A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE)
HSP 1 Score: 146 bits (368), Expect = 1.050e-34
Identity = 81/133 (60.90%), Postives = 95/133 (71.43%), Query Frame = 2
Query: 1238 PPHRPEPKLP--GPMIAVYLDDNSVKQLRDLYPDALESRMRKVVLEYGPSDEGRASYESLFGKTATVKLTGEASSSGRRALVASISLAGGLVEPQALAPAIDVTQGEEGGGPLGSAVLIEQIKRAGAHKKVRW 1630
P P P L GPM+AVYLDD+S+++L+ YP R+RKVV+EY PSDE R YE FG +ATVKLTGEASS R ALVAS+S AG VEP +L+ A+DVT GE GGGPLGS VLIEQIKR GA + W
Sbjct: 45 PAPAPSPPLQRTGPMVAVYLDDSSIEKLQMKYPGTNPGRLRKVVIEYDPSDEQRGLYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTPGEVGGGPLGSTVLIEQIKRVGAVAEDSW 177
BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Match:
D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI)
HSP 1 Score: 141 bits (355), Expect = 6.890e-33
Identity = 74/121 (61.16%), Postives = 90/121 (74.38%), Query Frame = 2
Query: 1268 GPMIAVYLDDNSVKQLRDLYPDALESRMRKVVLEYGPSDEGRASYESLFGKTATVKLTGEASSSGRRALVASISLAGGLVEPQALAPAIDVTQGEEGGGPLGSAVLIEQIKRAGAHKKVRW 1630
GPM+AVYLDD+S+++L+ YP R+RKVV+EY PSDE R YE FG +ATVK+TGEA S R ALVAS+S AG VEP +L+ A+DVT G+ GGGPLGS VLIEQIKR GA + W
Sbjct: 61 GPMVAVYLDDSSIEKLQMEYPGTKPGRLRKVVIEYDPSDEQRGLYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTPGDVGGGPLGSTVLIEQIKRVGALAEDSW 181
BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Match:
D8LQJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ5_ECTSI)
HSP 1 Score: 69.3 bits (168), Expect = 3.030e-9
Identity = 43/89 (48.31%), Postives = 54/89 (60.67%), Query Frame = 2
Query: 1400 YESLFGKTATVKLTGEASSSGRRALVASISLAGGLVEPQALAPAIDVTQG------------EEGGGPLGSAVLIEQIKRAGAHKKVRW 1630
Y LF A V +TG+ASS RRALVAS+S AG +VEP +L+ ID++ +G GPL SAVLIEQ K+AGA K+ W
Sbjct: 2 YRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEASAVAENDGPGPLASAVLIEQAKKAGATKEEMW 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 1.05e-34 / Id = 60.90 Expect = 6.89e-33 / Id = 61.16 Expect = 3.03e-9 / Id = 48.31 Sequence A0A6H5JUT1_9PHAE D7FZ55_ECTSI D8LQJ5_ECTSI
Match Name E-value Identity Description
A0A6H5JUT1_9PHAE 1.050e-34 60.90 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7FZ55_ECTSI 6.890e-33 61.16 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] D8LQJ5_ECTSI 3.030e-9 48.31 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 2 Model size 1630 Cds size 357 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9440.17193.1
>prot_H-paniculata_contig9440.17193.1 ID=prot_H-paniculata_contig9440.17193.1|Name=mRNA_H-paniculata_contig9440.17193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MIAVYLDDNSVKQLRDLYPDALESRMRKVVLEYGPSDEGRASYESLFGKT back to top mRNA from alignment at H-paniculata_contig9440:7278..9262+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9440.17193.1 ID=mRNA_H-paniculata_contig9440.17193.1|Name=mRNA_H-paniculata_contig9440.17193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1985bp|location=Sequence derived from alignment at H-paniculata_contig9440:7278..9262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)CTTGGGTAATGACCAACTTTAAATTGTAAACAGCGATCTATCGAGTGTAG
AGTCTTATTGGCCCGCTCTTGTACGAGCACCGGCCGCGCCCGTCCACGCA
GAGGTCAAGAGATGCAGGCGCTGAGGAATCTCCGCTCATCAAAACTGGTT
TATGGGGTTGCGCTAGGTTCGGGCTTGGTCGGCGTCACGACTCTGACTTA
TAAACTTATCAATGCTCCACCACCAAGGTGTGTGTGTGCATGTGTTTGTA
CAGACGTCCAGGACAGGATCCAGGGATCGCTGTATGGCGCACCAGGCGGG
CAGCTATAGTTTGTGACTAACCCGGACAATGATCTCTTTCTTTCGTCTAG
CTCATATGTACGTGTGTGTTTTTGCATTGTGTACAGTCTATGCGCCAACT
CTTTGTGCTGTGTGTGTACCTAAACCGGTGATGCAATGATGGATGGGTGC
TGAGTATGTCAAAGGGCGCGATTCAGCTGCACTCTTCGAAGTTCGCTGTA
TACAGACCCCCAACGGACAATATTTCCGGCAATGTGTTGCAGTGAATTGA
GCCTCGGAAAGCTATGAGACATCCTTACACAATCCCTAGCGATTCTACCC
CTCATTGTCGTCACTATTTATACGGTAAATGTATCTAAAATCAGCGGACT
GGCTGTTGACATGAAGACCTAGACATGACATATGACGCAAAGTGGCGTCC
TTTGATACAGATTTCGATTCTCAGGTACAACAGTACCCGCCATGAAATCG
GCAGTTGTAAATGATCAGTCGATGGTCACAGGTAGTTTTGATCTGCTGTA
TCTGACACTGCGCTATTATTACCTATCTACAGTGTGGTACATAATAAGTA
ACTTCGCGCATCTCTCAGTGCTGGTCCGAGGATACACCGTACGGTAACCC
AATGAACGCCCAAAAAGTTGGTGTCCAGGAAGCAGCTGACCACTAAGCTA
CACATCTTGATCTCGAAACACCAAAGATGTTCGAAGGAGTCCAACAGCCT
ATGTGTGTGCAATACAGCTATTGCACACAGCACAGTAGTCCAGTAGAGCT
GTACTATCCCTAAACTGACTATTTTTACTTTTGCAAAGGTGCAGCTGGCG
AGCACTTGCACATACATATCCCTGTTCAGGAATCCCCAAATGTGCAGCAA
TCGTATGAGTTAACCCTGGAGCCGTCTGTGCCTTTTTATACGAGTAATCA
TTTTCTTGTCCACGCGACTAGAGACGATCCTGACCCACCACCACACCGCC
CGGAGCCAAAGCTCCCTGGGCCA ATGATCGCGGTCTACCTCGACGACAAC
TCTGTCAAGCAACTGCGCGACTTATACCCGGACGCGCTCGAGTCTCGAAT
GAGAAAGGTGGTCCTCGAGTACGGTCCTTCCGACGAAGGACGCGCCTCTT
ACGAGTCATTGTTCGGCAAGACTGCCACAGTAAAG GTAGGTCAAGCATGG
TCTAGTGACCGTTTCGTCTTCGACGGGAGTAGTGGGGACCTCTGTTCGAG
GTGCAGACAATGCAAACGTTGCCGATTTTTCCCCCGCTCGGGAGTTGGGA
ATTCTGTTTCTCACACTATTACCACGCTATTTACGAAGCCTGAACAATTT
CGCGCATTTGATTTCTTTGATCCGGTGTTGCTTTCTCCAGTAACTAGACC
CCCCTCCCTCCCTGACACTGTTTACAAATTGCCCTGTTTGGTGGGTCCCG
GGTCCGATTGATACAGCGTCCATCCGCGCTCCTCGTCTGTCCTCGCAACA
CTAACAAAACCTAGCGCCCCCTACCCCCCTCCGGCTACAGTTGACTGGCG
AAGCCAGTAGCTCTGGGCGCCGTGCCCTAGTAGCATCGATATCTTTGGCT
GGAGGTTTGGTAGAACCGCAGGCACTCGCCCCCGCTATTGACGTTACGCA
GGGGGAGGAGGGCGGTGGTCCTCTTGGTAGTGCCGTCCTGATAGAGCAGA
TCAAGCGGGCGGGAGCACACAAGAAGGTACGCTGG back to top Coding sequence (CDS) from alignment at H-paniculata_contig9440:7278..9262+
>mRNA_H-paniculata_contig9440.17193.1 ID=mRNA_H-paniculata_contig9440.17193.1|Name=mRNA_H-paniculata_contig9440.17193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig9440:7278..9262+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top