mRNA_H-paniculata_contig9440.17193.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Match: A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.050e-34 Identity = 81/133 (60.90%), Postives = 95/133 (71.43%), Query Frame = 2 Query: 1238 PPHRPEPKLP--GPMIAVYLDDNSVKQLRDLYPDALESRMRKVVLEYGPSDEGRASYESLFGKTATVKLTGEASSSGRRALVASISLAGGLVEPQALAPAIDVTQGEEGGGPLGSAVLIEQIKRAGAHKKVRW 1630
P P P L GPM+AVYLDD+S+++L+ YP R+RKVV+EY PSDE R YE FG +ATVKLTGEASS R ALVAS+S AG VEP +L+ A+DVT GE GGGPLGS VLIEQIKR GA + W
Sbjct: 45 PAPAPSPPLQRTGPMVAVYLDDSSIEKLQMKYPGTNPGRLRKVVIEYDPSDEQRGLYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTPGEVGGGPLGSTVLIEQIKRVGAVAEDSW 177
BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Match: D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI) HSP 1 Score: 141 bits (355), Expect = 6.890e-33 Identity = 74/121 (61.16%), Postives = 90/121 (74.38%), Query Frame = 2 Query: 1268 GPMIAVYLDDNSVKQLRDLYPDALESRMRKVVLEYGPSDEGRASYESLFGKTATVKLTGEASSSGRRALVASISLAGGLVEPQALAPAIDVTQGEEGGGPLGSAVLIEQIKRAGAHKKVRW 1630
GPM+AVYLDD+S+++L+ YP R+RKVV+EY PSDE R YE FG +ATVK+TGEA S R ALVAS+S AG VEP +L+ A+DVT G+ GGGPLGS VLIEQIKR GA + W
Sbjct: 61 GPMVAVYLDDSSIEKLQMEYPGTKPGRLRKVVIEYDPSDEQRGLYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTPGDVGGGPLGSTVLIEQIKRVGALAEDSW 181
BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Match: D8LQJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ5_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 3.030e-9 Identity = 43/89 (48.31%), Postives = 54/89 (60.67%), Query Frame = 2 Query: 1400 YESLFGKTATVKLTGEASSSGRRALVASISLAGGLVEPQALAPAIDVTQG------------EEGGGPLGSAVLIEQIKRAGAHKKVRW 1630
Y LF A V +TG+ASS RRALVAS+S AG +VEP +L+ ID++ +G GPL SAVLIEQ K+AGA K+ W
Sbjct: 2 YRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEASAVAENDGPGPLASAVLIEQAKKAGATKEEMW 90 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9440.17193.1 >prot_H-paniculata_contig9440.17193.1 ID=prot_H-paniculata_contig9440.17193.1|Name=mRNA_H-paniculata_contig9440.17193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp MIAVYLDDNSVKQLRDLYPDALESRMRKVVLEYGPSDEGRASYESLFGKTback to top mRNA from alignment at H-paniculata_contig9440:7278..9262+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9440.17193.1 ID=mRNA_H-paniculata_contig9440.17193.1|Name=mRNA_H-paniculata_contig9440.17193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1985bp|location=Sequence derived from alignment at H-paniculata_contig9440:7278..9262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9440:7278..9262+ >mRNA_H-paniculata_contig9440.17193.1 ID=mRNA_H-paniculata_contig9440.17193.1|Name=mRNA_H-paniculata_contig9440.17193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig9440:7278..9262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |