mRNA_H-paniculata_contig9440.17193.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Match: A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.050e-34 Identity = 81/133 (60.90%), Postives = 95/133 (71.43%), Query Frame = 2 Query: 1238 PPHRPEPKLP--GPMIAVYLDDNSVKQLRDLYPDALESRMRKVVLEYGPSDEGRASYESLFGKTATVKLTGEASSSGRRALVASISLAGGLVEPQALAPAIDVTQGEEGGGPLGSAVLIEQIKRAGAHKKVRW 1630
P P P L GPM+AVYLDD+S+++L+ YP R+RKVV+EY PSDE R YE FG +ATVKLTGEASS R ALVAS+S AG VEP +L+ A+DVT GE GGGPLGS VLIEQIKR GA + W
Sbjct: 45 PAPAPSPPLQRTGPMVAVYLDDSSIEKLQMKYPGTNPGRLRKVVIEYDPSDEQRGLYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTPGEVGGGPLGSTVLIEQIKRVGAVAEDSW 177
BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Match: D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI) HSP 1 Score: 141 bits (355), Expect = 6.890e-33 Identity = 74/121 (61.16%), Postives = 90/121 (74.38%), Query Frame = 2 Query: 1268 GPMIAVYLDDNSVKQLRDLYPDALESRMRKVVLEYGPSDEGRASYESLFGKTATVKLTGEASSSGRRALVASISLAGGLVEPQALAPAIDVTQGEEGGGPLGSAVLIEQIKRAGAHKKVRW 1630
GPM+AVYLDD+S+++L+ YP R+RKVV+EY PSDE R YE FG +ATVK+TGEA S R ALVAS+S AG VEP +L+ A+DVT G+ GGGPLGS VLIEQIKR GA + W
Sbjct: 61 GPMVAVYLDDSSIEKLQMEYPGTKPGRLRKVVIEYDPSDEQRGLYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTPGDVGGGPLGSTVLIEQIKRVGALAEDSW 181
BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Match: D8LQJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ5_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 3.030e-9 Identity = 43/89 (48.31%), Postives = 54/89 (60.67%), Query Frame = 2 Query: 1400 YESLFGKTATVKLTGEASSSGRRALVASISLAGGLVEPQALAPAIDVTQG------------EEGGGPLGSAVLIEQIKRAGAHKKVRW 1630
Y LF A V +TG+ASS RRALVAS+S AG +VEP +L+ ID++ +G GPL SAVLIEQ K+AGA K+ W
Sbjct: 2 YRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEASAVAENDGPGPLASAVLIEQAKKAGATKEEMW 90 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9440.17193.1 >prot_H-paniculata_contig9440.17193.1 ID=prot_H-paniculata_contig9440.17193.1|Name=mRNA_H-paniculata_contig9440.17193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp MIAVYLDDNSVKQLRDLYPDALESRMRKVVLEYGPSDEGRASYESLFGKTback to top mRNA from alignment at H-paniculata_contig9440:7278..9262+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9440.17193.1 ID=mRNA_H-paniculata_contig9440.17193.1|Name=mRNA_H-paniculata_contig9440.17193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1985bp|location=Sequence derived from alignment at H-paniculata_contig9440:7278..9262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9440:7278..9262+ >mRNA_H-paniculata_contig9440.17193.1 ID=mRNA_H-paniculata_contig9440.17193.1|Name=mRNA_H-paniculata_contig9440.17193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig9440:7278..9262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |