mRNA_H-paniculata_contig9440.17193.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9440.17193.1
Unique NamemRNA_H-paniculata_contig9440.17193.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Match: A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.050e-34
Identity = 81/133 (60.90%), Postives = 95/133 (71.43%), Query Frame = 2 
Query: 1238 PPHRPEPKLP--GPMIAVYLDDNSVKQLRDLYPDALESRMRKVVLEYGPSDEGRASYESLFGKTATVKLTGEASSSGRRALVASISLAGGLVEPQALAPAIDVTQGEEGGGPLGSAVLIEQIKRAGAHKKVRW 1630
            P   P P L   GPM+AVYLDD+S+++L+  YP     R+RKVV+EY PSDE R  YE  FG +ATVKLTGEASS  R ALVAS+S AG  VEP +L+ A+DVT GE GGGPLGS VLIEQIKR GA  +  W
Sbjct:   45 PAPAPSPPLQRTGPMVAVYLDDSSIEKLQMKYPGTNPGRLRKVVIEYDPSDEQRGLYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTPGEVGGGPLGSTVLIEQIKRVGAVAEDSW 177
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BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Match: D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 6.890e-33
Identity = 74/121 (61.16%), Postives = 90/121 (74.38%), Query Frame = 2 
Query: 1268 GPMIAVYLDDNSVKQLRDLYPDALESRMRKVVLEYGPSDEGRASYESLFGKTATVKLTGEASSSGRRALVASISLAGGLVEPQALAPAIDVTQGEEGGGPLGSAVLIEQIKRAGAHKKVRW 1630
            GPM+AVYLDD+S+++L+  YP     R+RKVV+EY PSDE R  YE  FG +ATVK+TGEA S  R ALVAS+S AG  VEP +L+ A+DVT G+ GGGPLGS VLIEQIKR GA  +  W
Sbjct:   61 GPMVAVYLDDSSIEKLQMEYPGTKPGRLRKVVIEYDPSDEQRGLYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTPGDVGGGPLGSTVLIEQIKRVGALAEDSW 181
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BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Match: D8LQJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ5_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 3.030e-9
Identity = 43/89 (48.31%), Postives = 54/89 (60.67%), Query Frame = 2 
Query: 1400 YESLFGKTATVKLTGEASSSGRRALVASISLAGGLVEPQALAPAIDVTQG------------EEGGGPLGSAVLIEQIKRAGAHKKVRW 1630
            Y  LF   A V +TG+ASS  RRALVAS+S AG +VEP +L+  ID++               +G GPL SAVLIEQ K+AGA K+  W
Sbjct:    2 YRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEASAVAENDGPGPLASAVLIEQAKKAGATKEEMW 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9440.17193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JUT1_9PHAE1.050e-3460.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ55_ECTSI6.890e-3361.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQJ5_ECTSI3.030e-948.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9440contigH-paniculata_contig9440:7278..9262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1630
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9440.17193.1prot_H-paniculata_contig9440.17193.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9440 8551..9262 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.1870866-UTR-H-paniculata_contig9440:7277..85501622931174.1870866-UTR-H-paniculata_contig9440:7277..8550Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9440 7278..8550 +
1691481623.8713977-UTR-H-paniculata_contig9440:7277..85501691481623.8713977-UTR-H-paniculata_contig9440:7277..8550Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9440 7278..8550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.2153342-CDS-H-paniculata_contig9440:8550..87121622931174.2153342-CDS-H-paniculata_contig9440:8550..8712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9440 8551..8712 +
1691481623.880287-CDS-H-paniculata_contig9440:8550..87121691481623.880287-CDS-H-paniculata_contig9440:8550..8712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9440 8551..8712 +
1622931174.2326598-CDS-H-paniculata_contig9440:9067..92621622931174.2326598-CDS-H-paniculata_contig9440:9067..9262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9440 9068..9262 +
1691481623.8969092-CDS-H-paniculata_contig9440:9067..92621691481623.8969092-CDS-H-paniculata_contig9440:9067..9262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9440 9068..9262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9440.17193.1

>prot_H-paniculata_contig9440.17193.1 ID=prot_H-paniculata_contig9440.17193.1|Name=mRNA_H-paniculata_contig9440.17193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MIAVYLDDNSVKQLRDLYPDALESRMRKVVLEYGPSDEGRASYESLFGKT
ATVKLTGEASSSGRRALVASISLAGGLVEPQALAPAIDVTQGEEGGGPLG
SAVLIEQIKRAGAHKKVRW
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mRNA from alignment at H-paniculata_contig9440:7278..9262+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9440.17193.1 ID=mRNA_H-paniculata_contig9440.17193.1|Name=mRNA_H-paniculata_contig9440.17193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1985bp|location=Sequence derived from alignment at H-paniculata_contig9440:7278..9262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGGGTAATGACCAACTTTAAATTGTAAACAGCGATCTATCGAGTGTAG
AGTCTTATTGGCCCGCTCTTGTACGAGCACCGGCCGCGCCCGTCCACGCA
GAGGTCAAGAGATGCAGGCGCTGAGGAATCTCCGCTCATCAAAACTGGTT
TATGGGGTTGCGCTAGGTTCGGGCTTGGTCGGCGTCACGACTCTGACTTA
TAAACTTATCAATGCTCCACCACCAAGGTGTGTGTGTGCATGTGTTTGTA
CAGACGTCCAGGACAGGATCCAGGGATCGCTGTATGGCGCACCAGGCGGG
CAGCTATAGTTTGTGACTAACCCGGACAATGATCTCTTTCTTTCGTCTAG
CTCATATGTACGTGTGTGTTTTTGCATTGTGTACAGTCTATGCGCCAACT
CTTTGTGCTGTGTGTGTACCTAAACCGGTGATGCAATGATGGATGGGTGC
TGAGTATGTCAAAGGGCGCGATTCAGCTGCACTCTTCGAAGTTCGCTGTA
TACAGACCCCCAACGGACAATATTTCCGGCAATGTGTTGCAGTGAATTGA
GCCTCGGAAAGCTATGAGACATCCTTACACAATCCCTAGCGATTCTACCC
CTCATTGTCGTCACTATTTATACGGTAAATGTATCTAAAATCAGCGGACT
GGCTGTTGACATGAAGACCTAGACATGACATATGACGCAAAGTGGCGTCC
TTTGATACAGATTTCGATTCTCAGGTACAACAGTACCCGCCATGAAATCG
GCAGTTGTAAATGATCAGTCGATGGTCACAGGTAGTTTTGATCTGCTGTA
TCTGACACTGCGCTATTATTACCTATCTACAGTGTGGTACATAATAAGTA
ACTTCGCGCATCTCTCAGTGCTGGTCCGAGGATACACCGTACGGTAACCC
AATGAACGCCCAAAAAGTTGGTGTCCAGGAAGCAGCTGACCACTAAGCTA
CACATCTTGATCTCGAAACACCAAAGATGTTCGAAGGAGTCCAACAGCCT
ATGTGTGTGCAATACAGCTATTGCACACAGCACAGTAGTCCAGTAGAGCT
GTACTATCCCTAAACTGACTATTTTTACTTTTGCAAAGGTGCAGCTGGCG
AGCACTTGCACATACATATCCCTGTTCAGGAATCCCCAAATGTGCAGCAA
TCGTATGAGTTAACCCTGGAGCCGTCTGTGCCTTTTTATACGAGTAATCA
TTTTCTTGTCCACGCGACTAGAGACGATCCTGACCCACCACCACACCGCC
CGGAGCCAAAGCTCCCTGGGCCAATGATCGCGGTCTACCTCGACGACAAC
TCTGTCAAGCAACTGCGCGACTTATACCCGGACGCGCTCGAGTCTCGAAT
GAGAAAGGTGGTCCTCGAGTACGGTCCTTCCGACGAAGGACGCGCCTCTT
ACGAGTCATTGTTCGGCAAGACTGCCACAGTAAAGGTAGGTCAAGCATGG
TCTAGTGACCGTTTCGTCTTCGACGGGAGTAGTGGGGACCTCTGTTCGAG
GTGCAGACAATGCAAACGTTGCCGATTTTTCCCCCGCTCGGGAGTTGGGA
ATTCTGTTTCTCACACTATTACCACGCTATTTACGAAGCCTGAACAATTT
CGCGCATTTGATTTCTTTGATCCGGTGTTGCTTTCTCCAGTAACTAGACC
CCCCTCCCTCCCTGACACTGTTTACAAATTGCCCTGTTTGGTGGGTCCCG
GGTCCGATTGATACAGCGTCCATCCGCGCTCCTCGTCTGTCCTCGCAACA
CTAACAAAACCTAGCGCCCCCTACCCCCCTCCGGCTACAGTTGACTGGCG
AAGCCAGTAGCTCTGGGCGCCGTGCCCTAGTAGCATCGATATCTTTGGCT
GGAGGTTTGGTAGAACCGCAGGCACTCGCCCCCGCTATTGACGTTACGCA
GGGGGAGGAGGGCGGTGGTCCTCTTGGTAGTGCCGTCCTGATAGAGCAGA
TCAAGCGGGCGGGAGCACACAAGAAGGTACGCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9440:7278..9262+

>mRNA_H-paniculata_contig9440.17193.1 ID=mRNA_H-paniculata_contig9440.17193.1|Name=mRNA_H-paniculata_contig9440.17193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig9440:7278..9262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCGCGGTCTACCTCGACGACAACTCTGTCAAGCAACTGCGCGACTT
ATACCCGGACGCGCTCGAGTCTCGAATGAGAAAGGTGGTCCTCGAGTACG
GTCCTTCCGACGAAGGACGCGCCTCTTACGAGTCATTGTTCGGCAAGACT
GCCACAGTAAAGATGATCGCGGTCTACCTCGACGACAACTCTGTCAAGCA
ACTGCGCGACTTATACCCGGACGCGCTCGAGTCTCGAATGAGAAAGGTGG
TCCTCGAGTACGGTCCTTCCGACGAAGGACGCGCCTCTTACGAGTCATTG
TTCGGCAAGACTGCCACAGTAAAGTTGACTGGCGAAGCCAGTAGCTCTGG
GCGCCGTGCCCTAGTAGCATCGATATCTTTGGCTGGAGGTTTGGTAGAAC
CGCAGGCACTCGCCCCCGCTATTGACGTTACGCAGGGGGAGGAGGGCGGT
GGTCCTCTTGGTAGTGCCGTCCTGATAGAGCAGATCAAGCGGGCGGGAGC
ACACAAGAAGGTACGCTGGTTGACTGGCGAAGCCAGTAGCTCTGGGCGCC
GTGCCCTAGTAGCATCGATATCTTTGGCTGGAGGTTTGGTAGAACCGCAG
GCACTCGCCCCCGCTATTGACGTTACGCAGGGGGAGGAGGGCGGTGGTCC
TCTTGGTAGTGCCGTCCTGATAGAGCAGATCAAGCGGGCGGGAGCACACA
AGAAGGTACGCTGG
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