mRNA_H-paniculata_contig82439.16263.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: G1QPE4_NOMLE (Tetratricopeptide repeat domain 28 n=1 Tax=Nomascus leucogenys TaxID=61853 RepID=G1QPE4_NOMLE) HSP 1 Score: 110 bits (274), Expect = 1.860e-26 Identity = 52/70 (74.29%), Postives = 55/70 (78.57%), Query Frame = 2
Query: 2 TPRASKVMRCIALLRLTLGGLHALSCPHCPMSPSEMNPVPQLEMQKSPVFCVTHTGSCRLELFLFGHLGT 211
TP V RC+ALL LT G LH LSC HCP PSEMNPVPQLEMQKSPVFC+ H GSCRL+LFLFGHL T
Sbjct: 62 TPCTYWVRRCLALLWLTHGALHPLSCTHCPALPSEMNPVPQLEMQKSPVFCIAHAGSCRLKLFLFGHLAT 131
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: UPI001BB27383 (hypothetical protein n=1 Tax=Chlamydia trachomatis TaxID=813 RepID=UPI001BB27383) HSP 1 Score: 89.4 bits (220), Expect = 6.680e-22 Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query: 62 LHALSCPHCPMSPSEMNPVPQLEMQKSPVFCVTHTGSCRLELFLFGHLGT 211
+H L+C HC PSEMNPVPQ+EMQKSPVFCV H GSCRLELFLFGHLG+
Sbjct: 12 VHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRLELFLFGHLGS 61
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: Q86TZ0_HUMAN (Full-length cDNA clone CS0DC023YN15 of Neuroblastoma of Homo sapiens (human) (Fragment) n=1 Tax=Homo sapiens TaxID=9606 RepID=Q86TZ0_HUMAN) HSP 1 Score: 88.2 bits (217), Expect = 2.250e-21 Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 2
Query: 65 HALSCPHCPMSPSEMNPVPQLEMQKSPVFCVTHTGSCRLELFLFGHLGT 211
H L+C HC PSEMNPVPQ+EMQKSPVFCV H GSCRLELFLFGHLG+
Sbjct: 25 HPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHGGSCRLELFLFGHLGS 73
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: A0A2J8MS18_PANTR (Uncharacterized protein n=1 Tax=Pan troglodytes TaxID=9598 RepID=A0A2J8MS18_PANTR) HSP 1 Score: 84.0 bits (206), Expect = 1.220e-19 Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = 2
Query: 65 HALSCPHCPMSPSEMNPVPQLEMQKSPVFCVTHTGSCRLELFLFGHLGT 211
H L+C HC PSEMNPVPQ+EMQKSPVFCV H GSCR ELFLF HLG+
Sbjct: 13 HPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFSHLGS 61
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: A0A5F8A1T5_MACMU (Uncharacterized protein n=1 Tax=Macaca mulatta TaxID=9544 RepID=A0A5F8A1T5_MACMU) HSP 1 Score: 79.3 bits (194), Expect = 3.300e-17 Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = -3
Query: 3 RFQDGQIGTAPVYSSQCE*HRRQVISAFPTEVPGSSHWGSLDSGGR-KGRAAHRV*AEAGRCIASPWKHEG 212
RFQDG+IGT PV SSQ E HRR+VISAFPTEVPGSS WG DSG R + RA H + E + P+ +G
Sbjct: 4 RFQDGRIGTTPVCSSQRERHRRRVISAFPTEVPGSSRWGLSDSGRRPQSRAGHHLTQELQQVGEFPFLEKG 74
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: A0A5F8A526_MACMU (Uncharacterized protein n=2 Tax=Macaca TaxID=9539 RepID=A0A5F8A526_MACMU) HSP 1 Score: 75.1 bits (183), Expect = 1.270e-15 Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = -3
Query: 81 GQIGTAPVYSSQCE*HRRQVISAFPTEVPGSSHWGSLDSG 200
G+IGTAPVYSSQCE RR VISAFPTEVPGSSHWG LDSG
Sbjct: 9 GRIGTAPVYSSQCERCRRWVISAFPTEVPGSSHWGLLDSG 48
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: A0A2J8PHP6_PANTR (T0008399 isoform 1 n=2 Tax=Pan troglodytes TaxID=9598 RepID=A0A2J8PHP6_PANTR) HSP 1 Score: 72.8 bits (177), Expect = 3.770e-15 Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 2
Query: 101 SEMNPVPQLEMQKSPVFCVTHTGSCRLELFLFGHLGT 211
SEMNPVPQ+EMQKSPVFCV H GSCR ELFLFGHLG+
Sbjct: 49 SEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGS 85
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: UPI0018906646 (uncharacterized protein LOC119256547 n=1 Tax=Talpa occidentalis TaxID=50954 RepID=UPI0018906646) HSP 1 Score: 72.8 bits (177), Expect = 6.110e-15 Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 2
Query: 101 SEMNPVPQLEMQKSPVFCVTHTGSCRLELFLFGHLGT 211
SEMNPVPQ+EMQKSPVFCV H GSCR ELFLFGHLG+
Sbjct: 64 SEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGS 100
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: A0A8I5UK88_PONAB (Uncharacterized protein n=1 Tax=Pongo abelii TaxID=9601 RepID=A0A8I5UK88_PONAB) HSP 1 Score: 73.2 bits (178), Expect = 1.430e-14 Identity = 41/71 (57.75%), Postives = 45/71 (63.38%), Query Frame = -3
Query: 3 RFQDGQIGTAPVYSSQCE*HRRQVISAFPTEVPGSSHWGSLDSGGRK-GRAAHRV*AEAGRCIASPWKHEG 212
RFQDG+IGTAPV SSQ E HR VISAFPTEVP SSHWG DSG R H + EA P+ +G
Sbjct: 28 RFQDGRIGTAPVCSSQRERHRGGVISAFPTEVPASSHWGLSDSGCSPWSRVGHHLTQEAQGVREFPFLAKG 98
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: B4DRF8_HUMAN (HCG1984907 n=1 Tax=Homo sapiens TaxID=9606 RepID=B4DRF8_HUMAN) HSP 1 Score: 70.5 bits (171), Expect = 3.480e-14 Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 2
Query: 65 HALSCPHCPMSPSEMNPVPQLEMQKSPVFCVTHTGSCRLEL 187
H L+C HC PSEMNPVPQ+EMQKSPVFCV H GSCR EL
Sbjct: 13 HPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL 53 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig82439.16263.1 >prot_H-paniculata_contig82439.16263.1 ID=prot_H-paniculata_contig82439.16263.1|Name=mRNA_H-paniculata_contig82439.16263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp MRCIALLRLTLGGLHALSCPHCPMSPSEMNPVPQLEMQKSPVFCVTHTGSback to top mRNA from alignment at H-paniculata_contig82439:295..508- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig82439.16263.1 ID=mRNA_H-paniculata_contig82439.16263.1|Name=mRNA_H-paniculata_contig82439.16263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=214bp|location=Sequence derived from alignment at H-paniculata_contig82439:295..508- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig82439:295..508- >mRNA_H-paniculata_contig82439.16263.1 ID=mRNA_H-paniculata_contig82439.16263.1|Name=mRNA_H-paniculata_contig82439.16263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig82439:295..508- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |