mRNA_H-paniculata_contig82439.16263.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig82439.16263.1
Unique NamemRNA_H-paniculata_contig82439.16263.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: G1QPE4_NOMLE (Tetratricopeptide repeat domain 28 n=1 Tax=Nomascus leucogenys TaxID=61853 RepID=G1QPE4_NOMLE)

HSP 1 Score: 110 bits (274), Expect = 1.860e-26
Identity = 52/70 (74.29%), Postives = 55/70 (78.57%), Query Frame = 2
Query:    2 TPRASKVMRCIALLRLTLGGLHALSCPHCPMSPSEMNPVPQLEMQKSPVFCVTHTGSCRLELFLFGHLGT 211
            TP    V RC+ALL LT G LH LSC HCP  PSEMNPVPQLEMQKSPVFC+ H GSCRL+LFLFGHL T
Sbjct:   62 TPCTYWVRRCLALLWLTHGALHPLSCTHCPALPSEMNPVPQLEMQKSPVFCIAHAGSCRLKLFLFGHLAT 131          
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: UPI001BB27383 (hypothetical protein n=1 Tax=Chlamydia trachomatis TaxID=813 RepID=UPI001BB27383)

HSP 1 Score: 89.4 bits (220), Expect = 6.680e-22
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:   62 LHALSCPHCPMSPSEMNPVPQLEMQKSPVFCVTHTGSCRLELFLFGHLGT 211
            +H L+C HC   PSEMNPVPQ+EMQKSPVFCV H GSCRLELFLFGHLG+
Sbjct:   12 VHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRLELFLFGHLGS 61          
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: Q86TZ0_HUMAN (Full-length cDNA clone CS0DC023YN15 of Neuroblastoma of Homo sapiens (human) (Fragment) n=1 Tax=Homo sapiens TaxID=9606 RepID=Q86TZ0_HUMAN)

HSP 1 Score: 88.2 bits (217), Expect = 2.250e-21
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 2
Query:   65 HALSCPHCPMSPSEMNPVPQLEMQKSPVFCVTHTGSCRLELFLFGHLGT 211
            H L+C HC   PSEMNPVPQ+EMQKSPVFCV H GSCRLELFLFGHLG+
Sbjct:   25 HPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHGGSCRLELFLFGHLGS 73          
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: A0A2J8MS18_PANTR (Uncharacterized protein n=1 Tax=Pan troglodytes TaxID=9598 RepID=A0A2J8MS18_PANTR)

HSP 1 Score: 84.0 bits (206), Expect = 1.220e-19
Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = 2
Query:   65 HALSCPHCPMSPSEMNPVPQLEMQKSPVFCVTHTGSCRLELFLFGHLGT 211
            H L+C HC   PSEMNPVPQ+EMQKSPVFCV H GSCR ELFLF HLG+
Sbjct:   13 HPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFSHLGS 61          
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: A0A5F8A1T5_MACMU (Uncharacterized protein n=1 Tax=Macaca mulatta TaxID=9544 RepID=A0A5F8A1T5_MACMU)

HSP 1 Score: 79.3 bits (194), Expect = 3.300e-17
Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = -3
Query:    3 RFQDGQIGTAPVYSSQCE*HRRQVISAFPTEVPGSSHWGSLDSGGR-KGRAAHRV*AEAGRCIASPWKHEG 212
            RFQDG+IGT PV SSQ E HRR+VISAFPTEVPGSS WG  DSG R + RA H +  E  +    P+  +G
Sbjct:    4 RFQDGRIGTTPVCSSQRERHRRRVISAFPTEVPGSSRWGLSDSGRRPQSRAGHHLTQELQQVGEFPFLEKG 74          
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: A0A5F8A526_MACMU (Uncharacterized protein n=2 Tax=Macaca TaxID=9539 RepID=A0A5F8A526_MACMU)

HSP 1 Score: 75.1 bits (183), Expect = 1.270e-15
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = -3
Query:   81 GQIGTAPVYSSQCE*HRRQVISAFPTEVPGSSHWGSLDSG 200
            G+IGTAPVYSSQCE  RR VISAFPTEVPGSSHWG LDSG
Sbjct:    9 GRIGTAPVYSSQCERCRRWVISAFPTEVPGSSHWGLLDSG 48          
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: A0A2J8PHP6_PANTR (T0008399 isoform 1 n=2 Tax=Pan troglodytes TaxID=9598 RepID=A0A2J8PHP6_PANTR)

HSP 1 Score: 72.8 bits (177), Expect = 3.770e-15
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 2
Query:  101 SEMNPVPQLEMQKSPVFCVTHTGSCRLELFLFGHLGT 211
            SEMNPVPQ+EMQKSPVFCV H GSCR ELFLFGHLG+
Sbjct:   49 SEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGS 85          
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: UPI0018906646 (uncharacterized protein LOC119256547 n=1 Tax=Talpa occidentalis TaxID=50954 RepID=UPI0018906646)

HSP 1 Score: 72.8 bits (177), Expect = 6.110e-15
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 2
Query:  101 SEMNPVPQLEMQKSPVFCVTHTGSCRLELFLFGHLGT 211
            SEMNPVPQ+EMQKSPVFCV H GSCR ELFLFGHLG+
Sbjct:   64 SEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGS 100          
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: A0A8I5UK88_PONAB (Uncharacterized protein n=1 Tax=Pongo abelii TaxID=9601 RepID=A0A8I5UK88_PONAB)

HSP 1 Score: 73.2 bits (178), Expect = 1.430e-14
Identity = 41/71 (57.75%), Postives = 45/71 (63.38%), Query Frame = -3
Query:    3 RFQDGQIGTAPVYSSQCE*HRRQVISAFPTEVPGSSHWGSLDSGGRK-GRAAHRV*AEAGRCIASPWKHEG 212
            RFQDG+IGTAPV SSQ E HR  VISAFPTEVP SSHWG  DSG     R  H +  EA      P+  +G
Sbjct:   28 RFQDGRIGTAPVCSSQRERHRGGVISAFPTEVPASSHWGLSDSGCSPWSRVGHHLTQEAQGVREFPFLAKG 98          
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Match: B4DRF8_HUMAN (HCG1984907 n=1 Tax=Homo sapiens TaxID=9606 RepID=B4DRF8_HUMAN)

HSP 1 Score: 70.5 bits (171), Expect = 3.480e-14
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 2
Query:   65 HALSCPHCPMSPSEMNPVPQLEMQKSPVFCVTHTGSCRLEL 187
            H L+C HC   PSEMNPVPQ+EMQKSPVFCV H GSCR EL
Sbjct:   13 HPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL 53          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82439.16263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G1QPE4_NOMLE1.860e-2674.29Tetratricopeptide repeat domain 28 n=1 Tax=Nomascu... [more]
UPI001BB273836.680e-2278.00hypothetical protein n=1 Tax=Chlamydia trachomatis... [more]
Q86TZ0_HUMAN2.250e-2179.59Full-length cDNA clone CS0DC023YN15 of Neuroblasto... [more]
A0A2J8MS18_PANTR1.220e-1975.51Uncharacterized protein n=1 Tax=Pan troglodytes Ta... [more]
A0A5F8A1T5_MACMU3.300e-1759.15Uncharacterized protein n=1 Tax=Macaca mulatta Tax... [more]
A0A5F8A526_MACMU1.270e-1587.50Uncharacterized protein n=2 Tax=Macaca TaxID=9539 ... [more]
A0A2J8PHP6_PANTR3.770e-1586.49T0008399 isoform 1 n=2 Tax=Pan troglodytes TaxID=9... [more]
UPI00189066466.110e-1586.49uncharacterized protein LOC119256547 n=1 Tax=Talpa... [more]
A0A8I5UK88_PONAB1.430e-1457.75Uncharacterized protein n=1 Tax=Pongo abelii TaxID... [more]
B4DRF8_HUMAN3.480e-1475.61HCG1984907 n=1 Tax=Homo sapiens TaxID=9606 RepID=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82439contigH-paniculata_contig82439:295..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size214
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931034.4925325-CDS-H-paniculata_contig82439:294..4861622931034.4925325-CDS-H-paniculata_contig82439:294..486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82439 295..486 -
1691481559.9035172-CDS-H-paniculata_contig82439:294..4861691481559.9035172-CDS-H-paniculata_contig82439:294..486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82439 295..486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931034.5140758-UTR-H-paniculata_contig82439:486..5081622931034.5140758-UTR-H-paniculata_contig82439:486..508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig82439 487..508 -
1691481559.9118488-UTR-H-paniculata_contig82439:486..5081691481559.9118488-UTR-H-paniculata_contig82439:486..508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig82439 487..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82439.16263.1prot_H-paniculata_contig82439.16263.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig82439 295..486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig82439.16263.1

>prot_H-paniculata_contig82439.16263.1 ID=prot_H-paniculata_contig82439.16263.1|Name=mRNA_H-paniculata_contig82439.16263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MRCIALLRLTLGGLHALSCPHCPMSPSEMNPVPQLEMQKSPVFCVTHTGS
CRLELFLFGHLGT*
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mRNA from alignment at H-paniculata_contig82439:295..508-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig82439.16263.1 ID=mRNA_H-paniculata_contig82439.16263.1|Name=mRNA_H-paniculata_contig82439.16263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=214bp|location=Sequence derived from alignment at H-paniculata_contig82439:295..508- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCCCTCGTGCTTCCAAGGTGATGCGATGCATCGCCCTGCTTCGGCTCA CACTCGGTGGGCTGCACGCCCTTTCCTGCCCCCACTGTCCAATGAGCCCC AGTGAGATGAACCCGGTACCTCAGTTGGAAATGCAGAAATCACCTGTCTT CTGTGTCACTCACACTGGGAGCTGTAGACTGGAGCTGTTCCTATTTGGCC ATCTTGGAACCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig82439:295..508-

>mRNA_H-paniculata_contig82439.16263.1 ID=mRNA_H-paniculata_contig82439.16263.1|Name=mRNA_H-paniculata_contig82439.16263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig82439:295..508- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGATGCATCGCCCTGCTTCGGCTCACACTCGGTGGGCTGCACGCCCT
TTCCTGCCCCCACTGTCCAATGAGCCCCAGTGAGATGAACCCGGTACCTC
AGTTGGAAATGCAGAAATCACCTGTCTTCTGTGTCACTCACACTGGGAGC
TGTAGACTGGAGCTGTTCCTATTTGGCCATCTTGGAACCTGAATGCGATG
CATCGCCCTGCTTCGGCTCACACTCGGTGGGCTGCACGCCCTTTCCTGCC
CCCACTGTCCAATGAGCCCCAGTGAGATGAACCCGGTACCTCAGTTGGAA
ATGCAGAAATCACCTGTCTTCTGTGTCACTCACACTGGGAGCTGTAGACT
GGAGCTGTTCCTATTTGGCCATCTTGGAACCTGA
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