mRNA_H-paniculata_contig6378.14180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6378.14180.1
Unique NamemRNA_H-paniculata_contig6378.14180.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: A0A2P4XPH2_9STRA (RxLR effector candidate protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPH2_9STRA)

HSP 1 Score: 169 bits (428), Expect = 3.670e-44
Identity = 89/213 (41.78%), Postives = 134/213 (62.91%), Query Frame = 1
Query: 1612 RGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKN 2250
            R +VGALMY +T TRP+IAYAV + A+  E   +  +   KRI ++L T  D+G+ F+G   G  V G+ +A+ A D++ R+STTGYVF LNGSAISW S +Q  V  SSTEAEY+A     +E ++LR LL   G+  +G TT+++DN+  I+L+K    + RTKH+ +++H + E +    + L+Y  T + +AD  TK  ++ K  +  N
Sbjct:   23 RELVGALMYLATSTRPNIAYAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDVGLVFNGGIKGELV-GYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLREKVESKTVELEYKPTDEMIADGFTKALARDKHNKFVN 234          
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM)

HSP 1 Score: 170 bits (430), Expect = 1.450e-43
Identity = 90/211 (42.65%), Postives = 134/211 (63.51%), Query Frame = 1
Query: 1609 YRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQR 2241
            YR +VGALMY +T TRPDIA AV + A+  E   +  +   KRI ++L T  DLG+ F+G + G  + G+ +A+ A D++ R+STTGYVF LNGSAISW S +Q  V  SSTEAEY+A     +E ++LR LL   G    G TT F+DN+  I+L+K    + RTKH+ +++H + E + + ++ L+Y  T + +AD  TK  ++ K ++
Sbjct:   94 YRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGELI-GYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALARPKHRQ 303          
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: UPI001C093D0F (LOW QUALITY PROTEIN: secreted RxLR effector protein 161-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C093D0F)

HSP 1 Score: 167 bits (423), Expect = 2.200e-43
Identity = 85/215 (39.53%), Postives = 135/215 (62.79%), Query Frame = 1
Query: 1609 YRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNL 2253
            Y+  VG+L+Y ST TRPDIA+AV   A    D  +Q ++  KRI R+L+    LG+ +S  +    + G+ +AD A D++DRKS +GY+FK++G+A+SW S KQ  V  S+ EAEY+A     +E +++R LL        G T ++EDN+SAI +++    + R KH+ ++ H I + +  G + LK  +T D +AD+LTKG ++VKF +L+ +
Sbjct:   27 YQSAVGSLLYLSTRTRPDIAFAVSNVASFCSDPTKQHWTAVKRILRYLNGTQPLGLLYSKNTEKECI-GYSDADWAGDLDDRKSVSGYMFKMSGAAVSWKSKKQSXVLLSTAEAEYMALASAAQEAVWMRQLLSDLKNCPAGATVIYEDNQSAICMARNPQFHGRAKHIDIKHHFIRDQVASGAVDLKDCKTDDMIADMLTKGLTQVKFIKLREM 240          
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F)

HSP 1 Score: 170 bits (430), Expect = 2.310e-43
Identity = 93/233 (39.91%), Postives = 145/233 (62.23%), Query Frame = 1
Query: 1609 YRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNLLV*CYFTVL*KKRSSLIV 2307
            Y+ ++G+LMY  T TRPDI YAV   +R ME       +  KRI R++    D G+ F  + +G G  G+ ++D A D++DRKST+G++F LN  AISW S KQQ+VT SSTEAEYVAA     + ++LR +    G   +G TT++ DN S I LS+    + R+KH+ VR+H + +   +  + L+Y ++G+Q+ADILTK   +  F++L+++L  C F  + ++   ++V
Sbjct:  100 YKQIIGSLMYL-TYTRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADILTKPLKQPAFEKLRSMLGVCSFQSIEQEDDYVMV 330          
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: A0A090C2V0_HYAAE (RxLR effector candidate protein (Fragment) n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090C2V0_HYAAE)

HSP 1 Score: 168 bits (426), Expect = 2.620e-43
Identity = 88/220 (40.00%), Postives = 133/220 (60.45%), Query Frame = 1
Query: 1600 SIEYRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRG-FR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNLL 2256
            ++ YR  VG +MY    TRPD+A AV   ++   D C   +   KR+ R+L   P+ G+ F+ +  G  + G+ +AD A D+E R+ST+GYVF +NG  ISW S KQ+ V  SSTEAEY+A  E  KE ++L+  LG  G         +FEDN+ +I+L+K    + RTKH+ +R+H + E +  G + L+Y  T D LAD++TK  + V+F+ L++ L
Sbjct:   34 NVPYRSAVGGIMYLMVATRPDLAAAVGSLSQFSSDPCPTHWQALKRVLRYLQATPNHGLEFT-REEGSRICGYTDADWAGDIESRRSTSGYVFMMNGGCISWKSQKQRTVALSSTEAEYMALSEATKEAVWLKVFLGELGEMTSDEAIKMFEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVESGEVILEYCSTQDMLADMMTKPIAAVQFESLRDRL 252          
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: UPI001F04687D (secreted RxLR effector protein 161-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04687D)

HSP 1 Score: 166 bits (419), Expect = 3.240e-43
Identity = 90/213 (42.25%), Postives = 130/213 (61.03%), Query Frame = 1
Query: 1618 MVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNLL 2256
            M+G L Y ST TRPDIA ++   ++ M D  +  F   KR+ R++      G+ FS   N   + G+ +AD A +++DR+ST+GYVFKL  S ISW S KQ  V  S+TEAEYVA  +  +E I+LR LL   G +    TT+ EDN+ AI +++    + RTKH+ V +H + E I    + + Y  + D +ADI+TKG SK +FQ+L+NLL
Sbjct:    1 MIGCLTYVSTATRPDIAASIGVLSQFMSDPSKTHFQGVKRVLRYIKGTISYGLKFSCDKNDE-LHGYSDADYAGNLDDRRSTSGYVFKLANSTISWSSKKQSTVARSTTEAEYVALSQATQEVIWLRRLLSDLGSKPVSPTTVHEDNQGAIEIARNPKFHNRTKHIDVAYHFVRERILSKEVKVCYCPSKDMIADIMTKGLSKDQFQKLRNLL 212          
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: A0A151SR20_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SR20_CAJCA)

HSP 1 Score: 166 bits (421), Expect = 2.060e-42
Identity = 95/227 (41.85%), Postives = 139/227 (61.23%), Query Frame = 1
Query: 1600 SIEYRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNLLV*CYFTVL 2280
            S  ++ +VG+LMY +T TRPDI YAV   +R ME          KR+FR+L    DLG+ F  K NG  + GF +++ A D++DR+ST+G+VF +   AISW S KQQ+VT S+TEAE++AA     + I+LR +L    F  +G T +  DN S I LS+    + R+KH+ VR+H + + + E I+ L Y ++ DQ+ADILTK      F++L+ LL  C  + L
Sbjct:   80 STYFKRIVGSLMYLTT-TRPDIMYAVCLISRYMERPTELHLKAAKRVFRYLKGTTDLGV-FYKKINGSILTGFTDSNYAGDMDDRRSTSGHVFMIGSGAISWASKKQQVVTLSTTEAEFIAAATSACQAIWLRRILEELHFYQQGPTVIHCDNSSTIKLSRNPILHGRSKHIDVRYHFLRDLVIEKIIDLVYCRSEDQVADILTKPLKLEAFEKLRGLLGICSSSTL 304          
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 166 bits (421), Expect = 2.230e-42
Identity = 83/217 (38.25%), Postives = 132/217 (60.83%), Query Frame = 1
Query: 1606 EYRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNLL 2256
            EY+ ++G L Y +T TRPD+A AV   ++ M    ++ +   KR+ R++    + G+ F GKS    + G+ +AD A D++ R+ST+GYVF++NGS +SWCS +Q  VT S+TEAEYVA     +E ++LR LL   G +    + + EDN+ AI LSK    + RTKH+ V +H + E + +  + + Y  T   LAD++TK   +  FQ+ +++L
Sbjct:   85 EYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301          
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 168 bits (426), Expect = 3.020e-42
Identity = 86/216 (39.81%), Postives = 135/216 (62.50%), Query Frame = 1
Query: 1606 EYRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNL 2253
            EY+  VG+L+Y S+ TRPDI +AV+  A+   +   + ++  KRIFR+L    + G+ +S  +N   V GF +AD A D+ DRKST+GY F++NG+A+SW S KQ  V  S+ EAEYVA     +E +++R LL           T++EDN+SAI++SK    + R+KH+ +++H + + + +  L + Y  TG  LAD+ TKG  K +F++L+ L
Sbjct:  162 EYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376          
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 168 bits (425), Expect = 3.430e-42
Identity = 101/259 (39.00%), Postives = 153/259 (59.07%), Query Frame = 1
Query: 1501 ESTDKPYEPKSVGAVLSDISAGVQESSRGRNGISIE---YRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNLLV*CY 2268
            E T K Y  +   AV + I  G  + SR   G + +   ++ +VG+L Y +  TRPD+ Y+V+  +R ME+   Q     KRI R++      GI +  +  G  + GF+++D A DV+DRKST+GYVF L G A+SW S KQ +VT S+TEAE+VAA     + ++LR++LG  G+     TTLF DN S I LSK    + R+KH+ VR++ + + + E ++ LK+  T DQL+DI+TK      F+RL+  +  C+
Sbjct:  118 EETLKKYGMEGCNAVKNPIVPG-NKLSRAGGGDAADPTMFKQLVGSLRYLTA-TRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAVKLEVFERLRRRMEVCF 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P4XPH2_9STRA3.670e-4441.78RxLR effector candidate protein (Fragment) n=1 Tax... [more]
H3GB69_PHYRM1.450e-4342.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001C093D0F2.200e-4339.53LOW QUALITY PROTEIN: secreted RxLR effector protei... [more]
UPI0009AB427F2.310e-4339.91uncharacterized protein LOC109950541 n=1 Tax=Prunu... [more]
A0A090C2V0_HYAAE2.620e-4340.00RxLR effector candidate protein (Fragment) n=3 Tax... [more]
UPI001F04687D3.240e-4342.25secreted RxLR effector protein 161-like n=1 Tax=Xe... [more]
A0A151SR20_CAJCA2.060e-4241.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9D5L2_PARCT2.230e-4238.25Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A7D9M6E1_PARCT3.020e-4239.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2JBX5_9BRAS3.430e-4239.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6378contigH-paniculata_contig6378:7903..10281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.2
Seed ortholog evalue9.3e-11
Seed eggNOG ortholog90675.XP_010430873.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size2379
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6378.14180.1prot_H-paniculata_contig6378.14180.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6378 8712..9065 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930737.3065968-UTR-H-paniculata_contig6378:7902..87111622930737.3065968-UTR-H-paniculata_contig6378:7902..8711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6378 7903..8711 +
1691481429.6795712-UTR-H-paniculata_contig6378:7902..87111691481429.6795712-UTR-H-paniculata_contig6378:7902..8711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6378 7903..8711 +
1622930737.3367882-UTR-H-paniculata_contig6378:9065..102811622930737.3367882-UTR-H-paniculata_contig6378:9065..10281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6378 9066..10281 +
1691481429.701968-UTR-H-paniculata_contig6378:9065..102811691481429.701968-UTR-H-paniculata_contig6378:9065..10281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6378 9066..10281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930737.32297-CDS-H-paniculata_contig6378:8711..90651622930737.32297-CDS-H-paniculata_contig6378:8711..9065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6378 8712..9065 +
1691481429.6912107-CDS-H-paniculata_contig6378:8711..90651691481429.6912107-CDS-H-paniculata_contig6378:8711..9065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6378 8712..9065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6378.14180.1

>prot_H-paniculata_contig6378.14180.1 ID=prot_H-paniculata_contig6378.14180.1|Name=mRNA_H-paniculata_contig6378.14180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MKEDDSVARYKARLVAQGFAKVDDEDFFEISDLVARMSTLRTVFRLATEH
DFELEGMDVDAAYLNAPVEEELFVKLPPEFPPFSRDIPFVRRLRKACTVS
IRAAETGITLLTIFLLG*
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mRNA from alignment at H-paniculata_contig6378:7903..10281+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6378.14180.1 ID=mRNA_H-paniculata_contig6378.14180.1|Name=mRNA_H-paniculata_contig6378.14180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2379bp|location=Sequence derived from alignment at H-paniculata_contig6378:7903..10281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAGTAGAGACGCAAGTTCGACGACAAAGCATGGGCGGGGGTGTTTCTG GGGTACGACGAGGACAGCCCGAGTTATCACATATATAACCCGGAAAACAA GAGCGTCCAGTTGAGCAGGAATGTGAGATTTGACGAAGAGGACTTCGCAG CGGGTCATCGCGGACAGCAGGAGGACGACGGGACGCGCAACATGGAAGAT TTTTCCAACACCGCCAGTCACGTCAGCGGTCACTCGATCCCGCGCCCAAG GTGAGCAAGCAAGCGTATTTAACACGGAAGACCGGAGGTCGGCGTCACAA ATACCGCCGATATTACTGACACATTCGCTGCCAGCCGCCAGCGCAAACCC ATTCAGTGTCTTGAGCGATGTCGATGATGGCGAAAGTAACGGCGACTCCA AGATGTAGGATGAAGAGCCCGCAGTAGAAGACGCACCGTCAGCAGGGAAC GCCGCACCCGCGTCGCGAGGGAACACCACGAAGCAGTCGGGGACGGAGGC GCAGCGTCCGCTAGATCGGTCACCAATATGAACACGGGCGAGAGCAAGGG AAACCGCGAAGAAGATCCAGGCGCAACCGCGCGCGTGGCAAAAGTGGAAG CCACTGGCAACCTTACAGGGGCGTTATCTAAGGGGGAGCCGAAATCCGCG GCAGAAGCATTAAAGGATCCAGAGGCGGAAAAATAGCGCGCGGCAATTGA GGAAGAATGGGGGGCGTTGGTGGAAAATGGAACATGGGAAAGCGAAGACC CGGGGAGGTTACCGGCAGGGCGGAAGGCGATTCGTGCGATATGGATTTTC AAGCGGAGAATGAAGGAAGACGACAGCGTGGCACGCTACAAAGCGCGACT GGTGGCTCAAGGTTTTGCAAAGGTGGATGATGAAGATTTCTTTGAAATCA GTGACCTCGTAGCTCGCATGTCGACGTTACGTACTGTTTTTCGCCTGGCC ACCGAGCATGATTTCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTT GAACGCCCCGGTAGAAGAAGAACTGTTTGTTAAGCTACCCCCGGAGTTTC CCCCTTTCTCCCGAGACATACCGTTTGTGCGCCGCCTGCGTAAAGCCTGT ACGGTCTCAATCAGAGCGGCCGAAACTGGAATAACCCTCTTGACGATTTT CTTGTTGGGATAGGACTCGACCGTTCCACTACCGATTCATGTTTGTACTT CTCTCGCGACGATGGGGGAGAGACAAACCTTCTGGTGGCCGTCTATGTTG ACGACCTGGCCATTGCTGGCCATCGTGAGAAAGTACACGAGTTCAAGCAT AACATTAGTCAGCGTTTGAGGATGAAAGACTTGTGCTCTCTCTCGCATGT GTTGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACCATAACTTTCT CGCAGGGTAGCTACGTTCGAAAGGTACTAAAAATATGCGGGTTTGACGAG TGTCGAGGAGTATCCACCCCTATAGAGGGATAGTGAAGATTTCGGCACCC GAGTCGACCGACAAGCCCTACGAACCGAAATCAGTTGGAGCTGTACTGTC GGACATAAGCGCAGGAGTACAAGAAAGCAGCAGAGGGAGAAATGGCATTT CAATTGAGTACAGAGGTATGGTAGGAGCACTCATGTACACCTCGACATGA ACTAGACCGGATATAGCATACGCGGTACACCAAGCAGCACGTCGTATGGA GGACTCATGTCGGCAAGACTTCAGTACATGCAAGCGCATTTTTCGTCATC TCAGTACTATGCCTGACCTCGGCATTGCGTTCAGCGGTAAGAGTAATGGT CATGGTGTGGAAGGATTCCTTAATGCCGATTAGGCGGAAGATGTCGAGGA CCGAAAGTCCACAACAGGATACGTATTCAAGCTAAACGGTAGTGCGATAA GTTGGTGCTCTGGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGAGGCA GAGTACGTTGCTGCAGGAGAAGTGGGGAAGGAGACAATATATCTTAGGGA TTTACTAGGATCAAGAGGTTTCAGGTGAAGGGGGATCACGACATTGTTTG AGGACAATAAATCAGCTATTAGTCTCAGTAAGGGGTCTGGTGCAAACTGC AGGACAAAGCACCTTGGAGTGCGCTGGCACGGAATTTGAGAGTGGATCTG GGAAGGAATATTGGCGTTGAAATACGTGCAGACCGGCGACCAACTTGCTG ACATTTTGACAAAAGGACAAAGCAAAGTAAAATTTCAGAGACTGAAAAAT TTACTCGTATAATGCTATTTTACAGTATTGTGAAAGAAAAGGTCATCGTT GATAGTTTTGGGCTGAGCAACGAAGTTATGGTGAACAACGTTCGTGGTCC CGTTGGGTGTAGACGTTGTATCATTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6378:7903..10281+

>mRNA_H-paniculata_contig6378.14180.1 ID=mRNA_H-paniculata_contig6378.14180.1|Name=mRNA_H-paniculata_contig6378.14180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig6378:7903..10281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGAAGACGACAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTCA
AGGTTTTGCAAAGGTGGATGATGAAGATTTCTTTGAAATCAGTGACCTCG
TAGCTCGCATGTCGACGTTACGTACTGTTTTTCGCCTGGCCACCGAGCAT
GATTTCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTTGAACGCCCC
GGTAGAAGAAGAACTGTTTGTTAAGCTACCCCCGGAGTTTCCCCCTTTCT
CCCGAGACATACCGTTTGTGCGCCGCCTGCGTAAAGCCTGTACGGTCTCA
ATCAGAGCGGCCGAAACTGGAATAACCCTCTTGACGATTTTCTTGTTGGG
ATAGATGAAGGAAGACGACAGCGTGGCACGCTACAAAGCGCGACTGGTGG
CTCAAGGTTTTGCAAAGGTGGATGATGAAGATTTCTTTGAAATCAGTGAC
CTCGTAGCTCGCATGTCGACGTTACGTACTGTTTTTCGCCTGGCCACCGA
GCATGATTTCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTTGAACG
CCCCGGTAGAAGAAGAACTGTTTGTTAAGCTACCCCCGGAGTTTCCCCCT
TTCTCCCGAGACATACCGTTTGTGCGCCGCCTGCGTAAAGCCTGTACGGT
CTCAATCAGAGCGGCCGAAACTGGAATAACCCTCTTGACGATTTTCTTGT
TGGGATAG
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