mRNA_H-paniculata_contig6378.14180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: A0A2P4XPH2_9STRA (RxLR effector candidate protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPH2_9STRA) HSP 1 Score: 169 bits (428), Expect = 3.670e-44 Identity = 89/213 (41.78%), Postives = 134/213 (62.91%), Query Frame = 1
Query: 1612 RGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKN 2250
R +VGALMY +T TRP+IAYAV + A+ E + + KRI ++L T D+G+ F+G G V G+ +A+ A D++ R+STTGYVF LNGSAISW S +Q V SSTEAEY+A +E ++LR LL G+ +G TT+++DN+ I+L+K + RTKH+ +++H + E + + L+Y T + +AD TK ++ K + N
Sbjct: 23 RELVGALMYLATSTRPNIAYAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDVGLVFNGGIKGELV-GYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLREKVESKTVELEYKPTDEMIADGFTKALARDKHNKFVN 234
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM) HSP 1 Score: 170 bits (430), Expect = 1.450e-43 Identity = 90/211 (42.65%), Postives = 134/211 (63.51%), Query Frame = 1
Query: 1609 YRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQR 2241
YR +VGALMY +T TRPDIA AV + A+ E + + KRI ++L T DLG+ F+G + G + G+ +A+ A D++ R+STTGYVF LNGSAISW S +Q V SSTEAEY+A +E ++LR LL G G TT F+DN+ I+L+K + RTKH+ +++H + E + + ++ L+Y T + +AD TK ++ K ++
Sbjct: 94 YRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGELI-GYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALARPKHRQ 303
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: UPI001C093D0F (LOW QUALITY PROTEIN: secreted RxLR effector protein 161-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C093D0F) HSP 1 Score: 167 bits (423), Expect = 2.200e-43 Identity = 85/215 (39.53%), Postives = 135/215 (62.79%), Query Frame = 1
Query: 1609 YRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNL 2253
Y+ VG+L+Y ST TRPDIA+AV A D +Q ++ KRI R+L+ LG+ +S + + G+ +AD A D++DRKS +GY+FK++G+A+SW S KQ V S+ EAEY+A +E +++R LL G T ++EDN+SAI +++ + R KH+ ++ H I + + G + LK +T D +AD+LTKG ++VKF +L+ +
Sbjct: 27 YQSAVGSLLYLSTRTRPDIAFAVSNVASFCSDPTKQHWTAVKRILRYLNGTQPLGLLYSKNTEKECI-GYSDADWAGDLDDRKSVSGYMFKMSGAAVSWKSKKQSXVLLSTAEAEYMALASAAQEAVWMRQLLSDLKNCPAGATVIYEDNQSAICMARNPQFHGRAKHIDIKHHFIRDQVASGAVDLKDCKTDDMIADMLTKGLTQVKFIKLREM 240
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F) HSP 1 Score: 170 bits (430), Expect = 2.310e-43 Identity = 93/233 (39.91%), Postives = 145/233 (62.23%), Query Frame = 1
Query: 1609 YRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNLLV*CYFTVL*KKRSSLIV 2307
Y+ ++G+LMY T TRPDI YAV +R ME + KRI R++ D G+ F + +G G G+ ++D A D++DRKST+G++F LN AISW S KQQ+VT SSTEAEYVAA + ++LR + G +G TT++ DN S I LS+ + R+KH+ VR+H + + + + L+Y ++G+Q+ADILTK + F++L+++L C F + ++ ++V
Sbjct: 100 YKQIIGSLMYL-TYTRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADILTKPLKQPAFEKLRSMLGVCSFQSIEQEDDYVMV 330
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: A0A090C2V0_HYAAE (RxLR effector candidate protein (Fragment) n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090C2V0_HYAAE) HSP 1 Score: 168 bits (426), Expect = 2.620e-43 Identity = 88/220 (40.00%), Postives = 133/220 (60.45%), Query Frame = 1
Query: 1600 SIEYRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRG-FR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNLL 2256
++ YR VG +MY TRPD+A AV ++ D C + KR+ R+L P+ G+ F+ + G + G+ +AD A D+E R+ST+GYVF +NG ISW S KQ+ V SSTEAEY+A E KE ++L+ LG G +FEDN+ +I+L+K + RTKH+ +R+H + E + G + L+Y T D LAD++TK + V+F+ L++ L
Sbjct: 34 NVPYRSAVGGIMYLMVATRPDLAAAVGSLSQFSSDPCPTHWQALKRVLRYLQATPNHGLEFT-REEGSRICGYTDADWAGDIESRRSTSGYVFMMNGGCISWKSQKQRTVALSSTEAEYMALSEATKEAVWLKVFLGELGEMTSDEAIKMFEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVESGEVILEYCSTQDMLADMMTKPIAAVQFESLRDRL 252
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: UPI001F04687D (secreted RxLR effector protein 161-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04687D) HSP 1 Score: 166 bits (419), Expect = 3.240e-43 Identity = 90/213 (42.25%), Postives = 130/213 (61.03%), Query Frame = 1
Query: 1618 MVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNLL 2256
M+G L Y ST TRPDIA ++ ++ M D + F KR+ R++ G+ FS N + G+ +AD A +++DR+ST+GYVFKL S ISW S KQ V S+TEAEYVA + +E I+LR LL G + TT+ EDN+ AI +++ + RTKH+ V +H + E I + + Y + D +ADI+TKG SK +FQ+L+NLL
Sbjct: 1 MIGCLTYVSTATRPDIAASIGVLSQFMSDPSKTHFQGVKRVLRYIKGTISYGLKFSCDKNDE-LHGYSDADYAGNLDDRRSTSGYVFKLANSTISWSSKKQSTVARSTTEAEYVALSQATQEVIWLRRLLSDLGSKPVSPTTVHEDNQGAIEIARNPKFHNRTKHIDVAYHFVRERILSKEVKVCYCPSKDMIADIMTKGLSKDQFQKLRNLL 212
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: A0A151SR20_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SR20_CAJCA) HSP 1 Score: 166 bits (421), Expect = 2.060e-42 Identity = 95/227 (41.85%), Postives = 139/227 (61.23%), Query Frame = 1
Query: 1600 SIEYRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNLLV*CYFTVL 2280
S ++ +VG+LMY +T TRPDI YAV +R ME KR+FR+L DLG+ F K NG + GF +++ A D++DR+ST+G+VF + AISW S KQQ+VT S+TEAE++AA + I+LR +L F +G T + DN S I LS+ + R+KH+ VR+H + + + E I+ L Y ++ DQ+ADILTK F++L+ LL C + L
Sbjct: 80 STYFKRIVGSLMYLTT-TRPDIMYAVCLISRYMERPTELHLKAAKRVFRYLKGTTDLGV-FYKKINGSILTGFTDSNYAGDMDDRRSTSGHVFMIGSGAISWASKKQQVVTLSTTEAEFIAAATSACQAIWLRRILEELHFYQQGPTVIHCDNSSTIKLSRNPILHGRSKHIDVRYHFLRDLVIEKIIDLVYCRSEDQVADILTKPLKLEAFEKLRGLLGICSSSTL 304
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT) HSP 1 Score: 166 bits (421), Expect = 2.230e-42 Identity = 83/217 (38.25%), Postives = 132/217 (60.83%), Query Frame = 1
Query: 1606 EYRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNLL 2256
EY+ ++G L Y +T TRPD+A AV ++ M ++ + KR+ R++ + G+ F GKS + G+ +AD A D++ R+ST+GYVF++NGS +SWCS +Q VT S+TEAEYVA +E ++LR LL G + + + EDN+ AI LSK + RTKH+ V +H + E + + + + Y T LAD++TK + FQ+ +++L
Sbjct: 85 EYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT) HSP 1 Score: 168 bits (426), Expect = 3.020e-42 Identity = 86/216 (39.81%), Postives = 135/216 (62.50%), Query Frame = 1
Query: 1606 EYRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNL 2253
EY+ VG+L+Y S+ TRPDI +AV+ A+ + + ++ KRIFR+L + G+ +S +N V GF +AD A D+ DRKST+GY F++NG+A+SW S KQ V S+ EAEYVA +E +++R LL T++EDN+SAI++SK + R+KH+ +++H + + + + L + Y TG LAD+ TKG K +F++L+ L
Sbjct: 162 EYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS) HSP 1 Score: 168 bits (425), Expect = 3.430e-42 Identity = 101/259 (39.00%), Postives = 153/259 (59.07%), Query Frame = 1
Query: 1501 ESTDKPYEPKSVGAVLSDISAGVQESSRGRNGISIE---YRGMVGALMYTST*TRPDIAYAVHQAARRMEDSCRQDFSTCKRIFRHLSTMPDLGIAFSGKSNGHGVEGFLNAD*AEDVEDRKSTTGYVFKLNGSAISWCSGKQQLVTWSSTEAEYVAAGEVGKETIYLRDLLGSRGFR*RGITTLFEDNKSAISLSKGSGANCRTKHLGVRWHGI*EWIWEGILALKYVQTGDQLADILTKGQSKVKFQRLKNLLV*CY 2268
E T K Y + AV + I G + SR G + + ++ +VG+L Y + TRPD+ Y+V+ +R ME+ Q KRI R++ GI + + G + GF+++D A DV+DRKST+GYVF L G A+SW S KQ +VT S+TEAE+VAA + ++LR++LG G+ TTLF DN S I LSK + R+KH+ VR++ + + + E ++ LK+ T DQL+DI+TK F+RL+ + C+
Sbjct: 118 EETLKKYGMEGCNAVKNPIVPG-NKLSRAGGGDAADPTMFKQLVGSLRYLTA-TRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAVKLEVFERLRRRMEVCF 373 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6378.14180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6378.14180.1 >prot_H-paniculata_contig6378.14180.1 ID=prot_H-paniculata_contig6378.14180.1|Name=mRNA_H-paniculata_contig6378.14180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp MKEDDSVARYKARLVAQGFAKVDDEDFFEISDLVARMSTLRTVFRLATEHback to top mRNA from alignment at H-paniculata_contig6378:7903..10281+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6378.14180.1 ID=mRNA_H-paniculata_contig6378.14180.1|Name=mRNA_H-paniculata_contig6378.14180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2379bp|location=Sequence derived from alignment at H-paniculata_contig6378:7903..10281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6378:7903..10281+ >mRNA_H-paniculata_contig6378.14180.1 ID=mRNA_H-paniculata_contig6378.14180.1|Name=mRNA_H-paniculata_contig6378.14180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig6378:7903..10281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |