mRNA_H-paniculata_contig58766.13492.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58766.13492.1
Unique NamemRNA_H-paniculata_contig58766.13492.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58766.13492.1 vs. uniprot
Match: UPI0019007968 (secreted RxLR effector protein 161-like n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0019007968)

HSP 1 Score: 85.5 bits (210), Expect = 4.980e-19
Identity = 50/102 (49.02%), Postives = 59/102 (57.84%), Query Frame = 1
Query:    1 NSTEYRGMVRSLMYASTRTRPDTAYAVHQAARGMEDPCQEDFSTCKRIFRYLSTVPDLGITFGYKSNGHGLEEFVDASWAEDVEDRKSTVGYVLKLNGGAIS 306
            NST Y+ MV SLMY +T TRPD  YAV   +R ME P +  F   KRI RYL   P LGI +  K     L  F D+ +  D+ DRKST GY+  L  GAIS
Sbjct:   27 NSTIYKQMVGSLMYLTT-TRPDIMYAVSLISRFMESPTELHFLAAKRILRYLKGTPGLGILY-QKGEKLNLVGFSDSDYVGDLNDRKSTPGYIFMLGSGAIS 126          
BLAST of mRNA_H-paniculata_contig58766.13492.1 vs. uniprot
Match: A0A0J7KC73_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KC73_LASNI)

HSP 1 Score: 89.7 bits (221), Expect = 9.290e-19
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   13 YRGMVRSLMYASTRTRPDTAYAVHQAARGMEDPCQEDFSTCKRIFRYLSTVPDLGITFGYKSNGHGLEEFVDASWAEDVEDRKSTVGYVLKLNGGAIS 306
            YR    SL+Y +T+TRPD +YAV+  +R ++ P  +DF   KRIFRYL    +LG+ +G + +   L  + D+ +A D E RKST GYV+K  GG +S
Sbjct:  486 YRQAKGSLLYLTTKTRPDLSYAVNYYSRYIQSPESKDFLNVKRIFRYLQNTKELGLVYGGEKDTEKLTAYCDSDYAGDPETRKSTTGYVIKYCGGPVS 583          
BLAST of mRNA_H-paniculata_contig58766.13492.1 vs. uniprot
Match: A0A182GFL1_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GFL1_AEDAL)

HSP 1 Score: 86.3 bits (212), Expect = 1.560e-18
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 NSTEYRGMVRSLMYASTRTRPDTAYAVHQAARGMEDPCQEDFSTCKRIFRYLSTVPDLGITFGYKSNGHGLEEFVDASWAEDVEDRKSTVGYVLKLNGGAI 303
            N+T+Y  +V  L+Y S  TRPD A +V    R +  P Q D+   KRI RYL    D  +  G K +   L  +VDA WA D +DRKST GY+L+LNGG+I
Sbjct:    4 NNTQYASLVGGLLYVSVNTRPDIAASVSILGRKVSCPSQADWVEAKRILRYLKHTLDHELILGIKPDP--LTVYVDADWAGDAKDRKSTSGYLLQLNGGSI 102          
BLAST of mRNA_H-paniculata_contig58766.13492.1 vs. uniprot
Match: A0A182G509_AEDAL (Uncharacterized protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G509_AEDAL)

HSP 1 Score: 86.3 bits (212), Expect = 1.740e-18
Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = 1
Query:   13 YRGMVRSLMYASTRTRPDTAYAVHQAARGMEDPCQEDFSTCKRIFRYLSTVPDLGITFGYKSNGHGLEEFVDASWAEDVEDRKSTVGYVLKLNGGAI 303
            YR ++ SLM+  + TRPD  +A+   AR  E+P QE +   KR+ RYLS   D+G+ F  + +   L  +VDA WA D+ DRKST G+ +K+ G  +
Sbjct:   13 YRELIGSLMFLMSGTRPDICFALTYLARFQENPTQEHWQCLKRVLRYLSGTIDVGLQFSKRDDEPALSCYVDADWANDLVDRKSTTGFFIKVYGNVV 109          
BLAST of mRNA_H-paniculata_contig58766.13492.1 vs. uniprot
Match: UPI000C1D1B8F (uncharacterized protein LOC111399822 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D1B8F)

HSP 1 Score: 82.0 bits (201), Expect = 5.870e-18
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 1
Query:    1 NSTEYRGMVRSLMYASTRTRPDTAYAVHQAARGMEDPCQEDFSTCKRIFRYLSTVPDLGITFGYKSNGHGLEEFVDASWAEDVEDRKSTVGYVLKLNGGAIS 306
            N+T Y+ +V SLMY  T TRPD  Y V   +R M  P +      KR+ RY   + DLG+ +  + NG  L  F D+ +A DV+DRKST GYV  L+ GA+S
Sbjct:   27 NATMYKQLVGSLMYL-TATRPDLMYVVSLISRFMASPTELHLQAAKRVLRYWKGIVDLGVFYQKEGNGE-LMAFTDSDYAGDVDDRKSTSGYVFLLSEGAVS 126          
BLAST of mRNA_H-paniculata_contig58766.13492.1 vs. uniprot
Match: UPI001D07F9B1 (secreted RxLR effector protein 161-like n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D07F9B1)

HSP 1 Score: 82.0 bits (201), Expect = 6.680e-18
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   13 YRGMVRSLMYASTRTRPDTAYAVHQAARGMEDPCQEDFSTCKRIFRYLSTVPDLGITFGYKSNGHGLEE---FVDASWAEDVEDRKSTVGYVLKLNGGAIS 306
            YR  + SL+Y S +TRPD A+A++  +R  EDP  +D+   KR  RYL    D GI +  K++G  + E   + D+ +A D+ DRKST GY++  N   I+
Sbjct:   31 YREAIGSLLYLSCKTRPDLAFAINYESRFTEDPMNKDYKNIKRTLRYLQGTKDYGIYYKKKNDGKDVIELKVYCDSDYAGDLNDRKSTTGYIILYNDAPIN 131          
BLAST of mRNA_H-paniculata_contig58766.13492.1 vs. uniprot
Match: UPI001C093D0F (LOW QUALITY PROTEIN: secreted RxLR effector protein 161-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C093D0F)

HSP 1 Score: 84.3 bits (207), Expect = 1.010e-17
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   13 YRGMVRSLMYASTRTRPDTAYAVHQAARGMEDPCQEDFSTCKRIFRYLSTVPDLGITFGYKSNGHGLEEFVDASWAEDVEDRKSTVGYVLKLNGGAIS 306
            Y+  V SL+Y STRTRPD A+AV   A    DP ++ ++  KRI RYL+    LG+ +  K+       + DA WA D++DRKS  GY+ K++G A+S
Sbjct:   27 YQSAVGSLLYLSTRTRPDIAFAVSNVASFCSDPTKQHWTAVKRILRYLNGTQPLGLLYS-KNTEKECIGYSDADWAGDLDDRKSVSGYMFKMSGAAVS 123          
BLAST of mRNA_H-paniculata_contig58766.13492.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 86.7 bits (213), Expect = 1.120e-17
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   13 YRGMVRSLMYASTRTRPDTAYAVHQAARGMEDPCQEDFSTCKRIFRYLSTVPDLGITFGYKSNGHGLEEFVDASWAEDVEDRKSTVGYVLKLNGGAIS 306
            Y+  V  L+Y ST+TRPD AYAV   AR   DP +E +   KRI RYL+   D+G+ +           + DA WA D++DRKST GYV +++  AIS
Sbjct:  276 YQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAIS 373          
BLAST of mRNA_H-paniculata_contig58766.13492.1 vs. uniprot
Match: UPI001E279CF5 (secreted RxLR effector protein 161-like n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E279CF5)

HSP 1 Score: 82.0 bits (201), Expect = 1.530e-17
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    4 STEYRGMVRSLMYASTRTRPDTAYAVHQAARGMEDPCQEDFSTCKRIFRYLSTVPDLGITFGYKSNGHGLEEFVDASWAEDVEDRKSTVGYVLKLNGGAIS 306
            S  YR  V SLMY +  TRPD AYAV +AAR M +P   ++++ KRIFRYL    D G+   Y S+   +  + DA  A D+E R+ST G+V  + G A+S
Sbjct:   27 SIPYRSAVGSLMYLACATRPDIAYAVSKAARSMSEPTYANWTSVKRIFRYLRGTSDQGLL--YTSSEDDVCAYSDADLAGDIETRRSTSGFVSLIGGTAVS 125          
BLAST of mRNA_H-paniculata_contig58766.13492.1 vs. uniprot
Match: A0A4Y1RXM4_PRUDU (Multidrug resistance-associated protein 9 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RXM4_PRUDU)

HSP 1 Score: 86.3 bits (212), Expect = 1.550e-17
Identity = 50/103 (48.54%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    1 NSTEYRGMVRSLMYASTRTRPDTAYAVHQAARGMEDPCQEDFSTCKRIFRYLSTVPDLGITFGYKSNGHG-LEEFVDASWAEDVEDRKSTVGYVLKLNGGAIS 306
            ++TEY+ +V SL+Y  T TRPD  YAV   +R ME P +      KRI RYL    +LGI  GY+  G G L  F D+ +A DV+DRKST GYV  L  GA+S
Sbjct:  687 DATEYKKLVGSLLYL-TATRPDLMYAVGLISRYMEKPTEMHLQAAKRILRYLKGTMELGI--GYRKGGKGSLIAFADSDYAGDVDDRKSTSGYVFMLGTGAVS 786          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58766.13492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00190079684.980e-1949.02secreted RxLR effector protein 161-like n=1 Tax=Be... [more]
A0A0J7KC73_LASNI9.290e-1943.88Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A182GFL1_AEDAL1.560e-1845.54Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A182G509_AEDAL1.740e-1841.24Uncharacterized protein n=2 Tax=Aedes albopictus T... [more]
UPI000C1D1B8F5.870e-1844.12uncharacterized protein LOC111399822 n=1 Tax=Olea ... [more]
UPI001D07F9B16.680e-1839.60secreted RxLR effector protein 161-like n=1 Tax=Co... [more]
UPI001C093D0F1.010e-1742.86LOW QUALITY PROTEIN: secreted RxLR effector protei... [more]
A0A7D9KES8_PARCT1.120e-1743.88Retrovirus-related Pol poly from transposon TNT 1-... [more]
UPI001E279CF51.530e-1744.55secreted RxLR effector protein 161-like n=1 Tax=Ha... [more]
A0A4Y1RXM4_PRUDU1.550e-1748.54Multidrug resistance-associated protein 9 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58766contigH-paniculata_contig58766:457..762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue2.8e-13
Seed eggNOG ortholog65071.PYU1_T003665
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs1MJUB@121069,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930640.990189-CDS-H-paniculata_contig58766:456..7411622930640.990189-CDS-H-paniculata_contig58766:456..741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58766 457..741 -
1691481385.2901428-CDS-H-paniculata_contig58766:456..7411691481385.2901428-CDS-H-paniculata_contig58766:456..741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58766 457..741 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930641.0129406-UTR-H-paniculata_contig58766:741..7621622930641.0129406-UTR-H-paniculata_contig58766:741..762Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58766 742..762 -
1691481385.299718-UTR-H-paniculata_contig58766:741..7621691481385.299718-UTR-H-paniculata_contig58766:741..762Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58766 742..762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58766.13492.1prot_H-paniculata_contig58766.13492.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58766 457..741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58766.13492.1

>prot_H-paniculata_contig58766.13492.1 ID=prot_H-paniculata_contig58766.13492.1|Name=mRNA_H-paniculata_contig58766.13492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MVRSLMYASTRTRPDTAYAVHQAARGMEDPCQEDFSTCKRIFRYLSTVPD
LGITFGYKSNGHGLEEFVDASWAEDVEDRKSTVGYVLKLNGGAIS
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mRNA from alignment at H-paniculata_contig58766:457..762-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58766.13492.1 ID=mRNA_H-paniculata_contig58766.13492.1|Name=mRNA_H-paniculata_contig58766.13492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig58766:457..762- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATTCAACTGAATACAGAGGCATGGTAAGATCACTCATGTACGCCTCGAC AAGAACTAGACCTGATACAGCATATGCGGTACACCAAGCAGCACGTGGTA TGGAGGACCCGTGTCAGGAAGACTTCAGTACATGCAAGCGCATTTTTCGT TATCTCAGTACTGTGCCTGACCTCGGCATTACGTTCGGCTATAAGAGTAA TGGTCACGGTCTGGAAGAATTCGTTGATGCCAGTTGGGCGGAAGATGTCG AGGACCGAAAGTCCACAGTAGGATACGTTCTCAAGCTGAATGGTGGTGCG ATAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig58766:457..762-

>mRNA_H-paniculata_contig58766.13492.1 ID=mRNA_H-paniculata_contig58766.13492.1|Name=mRNA_H-paniculata_contig58766.13492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig58766:457..762- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAAGATCACTCATGTACGCCTCGACAAGAACTAGACCTGATACAGC
ATATGCGGTACACCAAGCAGCACGTGGTATGGAGGACCCGTGTCAGGAAG
ACTTCAGTACATGCAAGCGCATTTTTCGTTATCTCAGTACTGTGCCTGAC
CTCGGCATTACGTTCGGCTATAAGAGTAATGGTCACGGTCTGGAAGAATT
CGTTGATGCCAGTTGGGCGGAAGATGTCGAGGACCGAAAGTCCACAGTAG
GATACGTTCTCAAGCTGAATGGTGGTGCGATAAGTATGGTAAGATCACTC
ATGTACGCCTCGACAAGAACTAGACCTGATACAGCATATGCGGTACACCA
AGCAGCACGTGGTATGGAGGACCCGTGTCAGGAAGACTTCAGTACATGCA
AGCGCATTTTTCGTTATCTCAGTACTGTGCCTGACCTCGGCATTACGTTC
GGCTATAAGAGTAATGGTCACGGTCTGGAAGAATTCGTTGATGCCAGTTG
GGCGGAAGATGTCGAGGACCGAAAGTCCACAGTAGGATACGTTCTCAAGC
TGAATGGTGGTGCGATAAGT
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