prot_H-paniculata_contig5742.13303.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5742.13303.1
Unique Nameprot_H-paniculata_contig5742.13303.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length108
Homology
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY)

HSP 1 Score: 95.1 bits (235), Expect = 1.550e-20
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 0
Query:    2 LYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQAG 107
            ++K K   DG++EK K R VA+GF Q+EG+ + E ++P    AS+R LLA AA  D E+   D + AFL  D+DE + +++P   +     V KLNKA+YGL QAG
Sbjct:  916 VFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAG 1021          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 94.7 bits (234), Expect = 2.110e-20
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 0
Query:    2 LYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQAG 107
            ++K K   DG++EK K R VA+GF Q+EG+ + E ++P    AS+R LLA AA  D E+   D + AFL  D+DE + +++P   +     + KLNKA+YGL QAG
Sbjct:  652 VFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAG 757          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 94.7 bits (234), Expect = 2.140e-20
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 0
Query:    2 LYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQAG 107
            ++K K   DG++EK K R VA+GF Q+EG+ + E ++P    AS+R LLA AA  D E+   D + AFL  D+DE + +++P         V KLNKA+YGL QAG
Sbjct:  975 VFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAG 1080          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A401GM49_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GM49_9APHY)

HSP 1 Score: 89.7 bits (221), Expect = 1.210e-18
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 0
Query:    2 LYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQAG 107
            ++K K   DG++EK K R VA+GF Q+EG+ + E ++P     SIR LLA  A  D E+   D + AFL  D+DE + + IP   +     + +LNKA+YGL QAG
Sbjct:  927 VFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFTSIRTLLALTAKLDLEIHQMDVKSAFLNGDLDEEIYMNIPPSFRKDNKLIWRLNKALYGLKQAG 1032          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5KM90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM90_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.470e-18
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 0
Query:    2 LYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 106
            +Y RK  + G   + K R VA+GF Q EGV + E +SP P+  SIR+L A A   D +L HFDAEQAF+++++DE V I +        G V +L +++YGL QA
Sbjct:  168 VYSRKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLHPGCGALSGKVVRLRRSLYGLKQA 272          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 7.740e-18
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 0
Query:    2 LYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 106
            +Y  K  + G   + K R VA+GF Q EGV + E +SP P+  SIR+L A A   D +L HFDAEQAF+++++DE V I +P       G V +L + +YGL QA
Sbjct:  829 VYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRGLYGLKQA 933          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 9.960e-18
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 0
Query:   17 KCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 106
            K R VA+GF Q EGV + E +SP P+  SIR+L A A   D +L HFDAEQAF+++D+DE V I +P       G V +L +++YGL QA
Sbjct:  117 KARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSDLDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQA 206          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.670e-17
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 0
Query:   11 GKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 106
            G   + K R VA+GF Q EGV + E +SP P+  SIR+L A A   D +L HFDAEQAF+++++DE V I +P       G V +L +++YGL QA
Sbjct:  163 GYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQA 258          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.930e-17
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 0
Query:   11 GKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 106
            G   + K R VA+GF Q EGV + E +SP P+  SIR+L A A   D +L HFDAEQAF+++++DE V I +P       G V +L +++YGL QA
Sbjct:  361 GYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQA 456          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.940e-17
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 0
Query:   11 GKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 106
            G   + K R VA+GF Q EGV + E +SP P+  SIR+L A A   D +L HFDAEQAF+++++DE V I +P       G V +L +++YGL QA
Sbjct:  348 GYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQA 443          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401H317_9APHY1.550e-2044.34Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H123_9APHY2.110e-2043.40Retrovirus-related Pol polyprotein from transposon... [more]
A0A401G4V0_9APHY2.140e-2044.34Retrovirus-related Pol polyprotein from transposon... [more]
A0A401GM49_9APHY1.210e-1842.45Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KM90_9PHAE1.470e-1843.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV09_9PHAE7.740e-1843.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5L3_9PHAE9.960e-1848.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMK9_9PHAE1.670e-1745.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0K7_9PHAE1.930e-1745.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE1.940e-1745.83Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..107
e-value: 1.1E-20
score: 74.3
NoneNo IPR availablePANTHERPTHR11439:SF287coord: 3..106
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5742contigH-paniculata_contig5742:8364..8687 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5742.13303.1mRNA_H-paniculata_contig5742.13303.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5742 8364..8711 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5742.13303.1 ID=prot_H-paniculata_contig5742.13303.1|Name=mRNA_H-paniculata_contig5742.13303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLL
ATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAI
YGLVQAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like