mRNA_H-paniculata_contig5742.13303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5742.13303.1
Unique NamemRNA_H-paniculata_contig5742.13303.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5KM90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM90_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 9.600e-20
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   10 VVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 342
            V+  K +Y RK  + G   + K R VA+GF Q EGV + E +SP P+  SIR+L A A   D +L HFDAEQAF+++++DE V I +        G V +L +++YGL QA
Sbjct:  162 VISAKWVYSRKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLHPGCGALSGKVVRLRRSLYGLKQA 272          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.390e-19
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   10 VVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 342
            V+  K +Y  K  + G   + K R VA+GF Q EGV + E +SP P+  SIR+L A A   D +L HFDAEQAF+++++DE V I +P       G V +L + +YGL QA
Sbjct:  823 VISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRGLYGLKQA 933          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A3S3PZ35_9MAGN (Zinc finger, CCCH-type n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3PZ35_9MAGN)

HSP 1 Score: 90.5 bits (223), Expect = 8.870e-19
Identity = 49/113 (43.36%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   10 VVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQH--FPGAVGKLNKAIYGLVQA 342
            VVG K +YK K+  DG +E+ K R VA+GF Q+EG+ ++E +SP    A+IR++L  A A + ++R  D + AFL   + E V +E P R  H  +P  V  L KA+YGL QA
Sbjct: 1029 VVGCKWVYKTKLRADGSLERLKARLVAKGFNQVEGIDFSETFSPVVKPATIRIVLTIALAHNWDIRQLDVKNAFLNGHLHENVFMEQPPRFAHPVYPHHVCHLKKALYGLRQA 1141          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.300e-18
Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   10 VVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 342
            V+  K ++  K  + G   + K R VA+GF Q EGV + E +SP P+  SIR+L A A   D +L HFDAEQAF+++++DE V I +P       G V +L +++YGL QA
Sbjct:  148 VISAKWVFSWKRDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQA 258          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.340e-17
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   73 KCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 342
            K R VA+GF Q EGV + E +SP P+  SIR+L A A   D +L HFDAEQAF+++D+DE V I +P       G V +L +++YGL QA
Sbjct:  117 KARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSDLDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQA 206          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A4P1RVN6_LUPAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A4P1RVN6_LUPAN)

HSP 1 Score: 87.0 bits (214), Expect = 1.380e-17
Identity = 45/113 (39.82%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   10 VVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERL--QHFPGAVGKLNKAIYGLVQA 342
            V+G+K ++K K++ +G +++ K R VA+G+ Q++GV YTE +SP     +IR+++ TA  +   +R  D + AFL   I E + +E P  L    FP  V KL KA+YGL QA
Sbjct:  198 VIGSKWVFKSKLNPEGSLDRLKARLVAKGYHQVDGVDYTETFSPVIKPGTIRLIITTALVQKWPIRQLDVKNAFLHGVISETIFMEQPPGLVDPRFPNHVCKLKKALYGLKQA 310          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: UPI00142D6B46 (uncharacterized protein LOC103832953 isoform X1 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D6B46)

HSP 1 Score: 87.0 bits (214), Expect = 1.450e-17
Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    4 KLVVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIP-----ERLQHFP-GAVGKLNKAIYGLVQA 342
            K  VG K ++K K++ DG +E+ K R VA+G+ Q EG+ Y E +SP    A++++LLA AAAK   L   D   AFL  D++E + + +P      + + FP  AV KL K++YGL QA
Sbjct: 1007 KQAVGCKWVFKIKLNADGTIERYKARLVAKGYTQQEGLDYVETFSPVAKAATVKLLLAVAAAKGWSLTQLDISNAFLNGDLEEEIYMTLPPGYSPRQGESFPPDAVCKLKKSLYGLKQA 1125          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A2N9GB87_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GB87_FAGSY)

HSP 1 Score: 87.0 bits (214), Expect = 1.470e-17
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   10 VVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERL--QHFPGAVGKLNKAIYGLVQA 342
            VVG K +YK K+  DG +E+ K R VA+GF Q++GV ++E +SP    ASIR+ L  AA K  E+R  D + AFL   + + V ++ P       FP  V +L++A+YGL QA
Sbjct: 1041 VVGCKWVYKAKLKPDGSLERLKARLVAKGFSQVDGVDFSETFSPVIKPASIRLALTIAAVKGWEIRQLDVKNAFLHGYLSQPVYMQQPPGYVDSQFPTHVCQLSRALYGLKQA 1153          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.600e-17
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   55 GKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 342
            G   + K R VA+GF Q EGV + E +SP P+  SIR+L A A   D +L HFDAEQAF+++++DE V I +P       G V +L +++YGL QA
Sbjct:  361 GYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQA 456          
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.610e-17
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   55 GKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 342
            G   + K R VA+GF Q EGV + E +SP P+  SIR+L A A   D +L HFDAEQAF+++++DE V I +P       G V +L +++YGL QA
Sbjct:  348 GYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQA 443          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KM90_9PHAE9.600e-2043.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV09_9PHAE6.390e-1943.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3S3PZ35_9MAGN8.870e-1943.36Zinc finger, CCCH-type n=1 Tax=Cinnamomum micranth... [more]
A0A6H5KMK9_9PHAE1.300e-1842.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K5L3_9PHAE1.340e-1748.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4P1RVN6_LUPAN1.380e-1739.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00142D6B461.450e-1741.18uncharacterized protein LOC103832953 isoform X1 n=... [more]
A0A2N9GB87_FAGSY1.470e-1742.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K0K7_9PHAE2.600e-1745.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE2.610e-1745.83Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5742contigH-paniculata_contig5742:8364..8711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.5
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog15368.BRADI4G04484.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37V5Q@33090,3GFFK@35493,3IKJW@38820,3M7B5@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size348
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930619.1733057-CDS-H-paniculata_contig5742:8363..86871622930619.1733057-CDS-H-paniculata_contig5742:8363..8687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5742 8364..8687 -
1691481375.2224944-CDS-H-paniculata_contig5742:8363..86871691481375.2224944-CDS-H-paniculata_contig5742:8363..8687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5742 8364..8687 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930619.191692-UTR-H-paniculata_contig5742:8687..87111622930619.191692-UTR-H-paniculata_contig5742:8687..8711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5742 8688..8711 -
1691481375.235437-UTR-H-paniculata_contig5742:8687..87111691481375.235437-UTR-H-paniculata_contig5742:8687..8711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5742 8688..8711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5742.13303.1prot_H-paniculata_contig5742.13303.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5742 8364..8687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5742.13303.1

>prot_H-paniculata_contig5742.13303.1 ID=prot_H-paniculata_contig5742.13303.1|Name=mRNA_H-paniculata_contig5742.13303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLL
ATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAI
YGLVQAG*
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mRNA from alignment at H-paniculata_contig5742:8364..8711-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5742.13303.1 ID=mRNA_H-paniculata_contig5742.13303.1|Name=mRNA_H-paniculata_contig5742.13303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig5742:8364..8711- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAAGCTTGTGGTGGGAACGAAGATGCTTTACAAACGCAAGGTCAGCAA GGACGGCAAGGTGGAGAAATGCAAATGTAGACCTGTCGCCCAGGGCTTCC TGCAGATCGAAGGGGTACACTACACCGAGAAGTACTCACCTACGCCAGCG ACCGCGTCCATCCGGATGCTCTTGGCGACCGCAGCGGCGAAAGACAGAGA GCTGCGACATTTCGATGCAGAACAGGCGTTTTTGAAGACGGACATTGACG AAGCCGTATGCATCGAGATCCCCGAAAGGCTTCAACATTTCCCGGGAGCC GTGGGTAAGCTGAACAAGGCAATCTACGGGCTCGTCCAGGCGGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5742:8364..8711-

>mRNA_H-paniculata_contig5742.13303.1 ID=mRNA_H-paniculata_contig5742.13303.1|Name=mRNA_H-paniculata_contig5742.13303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig5742:8364..8711- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTTACAAACGCAAGGTCAGCAAGGACGGCAAGGTGGAGAAATGCAA
ATGTAGACCTGTCGCCCAGGGCTTCCTGCAGATCGAAGGGGTACACTACA
CCGAGAAGTACTCACCTACGCCAGCGACCGCGTCCATCCGGATGCTCTTG
GCGACCGCAGCGGCGAAAGACAGAGAGCTGCGACATTTCGATGCAGAACA
GGCGTTTTTGAAGACGGACATTGACGAAGCCGTATGCATCGAGATCCCCG
AAAGGCTTCAACATTTCCCGGGAGCCGTGGGTAAGCTGAACAAGGCAATC
TACGGGCTCGTCCAGGCGGGGTGAATGCTTTACAAACGCAAGGTCAGCAA
GGACGGCAAGGTGGAGAAATGCAAATGTAGACCTGTCGCCCAGGGCTTCC
TGCAGATCGAAGGGGTACACTACACCGAGAAGTACTCACCTACGCCAGCG
ACCGCGTCCATCCGGATGCTCTTGGCGACCGCAGCGGCGAAAGACAGAGA
GCTGCGACATTTCGATGCAGAACAGGCGTTTTTGAAGACGGACATTGACG
AAGCCGTATGCATCGAGATCCCCGAAAGGCTTCAACATTTCCCGGGAGCC
GTGGGTAAGCTGAACAAGGCAATCTACGGGCTCGTCCAGGCGGGGTGA
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