mRNA_H-paniculata_contig12044.1301.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12044.1301.1
Unique NamemRNA_H-paniculata_contig12044.1301.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12044.1301.1 vs. uniprot
Match: A0A6H5KPQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.480e-10
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   61 PSVEVAQPKVRGNIIAGSLIGATFARSFGADGMWEGTVVK 180
            P +E++ P VRG++IAG LIGATFA++FG DGMWEGTV K
Sbjct:  103 PLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTK 142
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BLAST of mRNA_H-paniculata_contig12044.1301.1 vs. uniprot
Match: D8LS02_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS02_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.800e-9
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   61 PSVEVAQPKVRGNIIAGSLIGATFARSFGADGMWEGTVVK 180
            P +E++ P VRG++IAG LIGATFA++FG DGMWEGTV K
Sbjct:  204 PLMEMSHPHVRGSVIAGELIGATFAKNFGRDGMWEGTVTK 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12044.1301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPQ2_9PHAE2.480e-1067.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS02_ECTSI1.800e-967.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12044contigH-paniculata_contig12044:301..1298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_001560.1
Exons2
Model size181
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928921.511174-CDS-H-paniculata_contig12044:300..4081622928921.511174-CDS-H-paniculata_contig12044:300..408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12044 301..408 -
1691480667.819309-CDS-H-paniculata_contig12044:300..4081691480667.819309-CDS-H-paniculata_contig12044:300..408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12044 301..408 -
1622928921.5303218-CDS-H-paniculata_contig12044:1226..12981622928921.5303218-CDS-H-paniculata_contig12044:1226..1298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12044 1227..1298 -
1691480667.830024-CDS-H-paniculata_contig12044:1226..12981691480667.830024-CDS-H-paniculata_contig12044:1226..1298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12044 1227..1298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12044.1301.1prot_H-paniculata_contig12044.1301.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12044 301..1298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12044.1301.1

>prot_H-paniculata_contig12044.1301.1 ID=prot_H-paniculata_contig12044.1301.1|Name=mRNA_H-paniculata_contig12044.1301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
EIVPTTAAAVGDMQAYGLLAPSVEVAQPKVRGNIIAGSLIGATFARSFGA
DGMWEGTVVK
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mRNA from alignment at H-paniculata_contig12044:301..1298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12044.1301.1 ID=mRNA_H-paniculata_contig12044.1301.1|Name=mRNA_H-paniculata_contig12044.1301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=998bp|location=Sequence derived from alignment at H-paniculata_contig12044:301..1298- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATTGTCCCCACGACCGCTGCTGCAGTTGGGGACATGCAAGCTTACGG
GCTGCTCGCGCCTTCGGTCGAGGTGGGTGCGAAAGAAGGGGGATGGTGTG
TTGTATTGTGTGGTCTGGTGAGTGGCTTGGTAGGTTGGTGTACTGGGTAT
GATGGGCATGAGAGAGAAAGTCTCATTATGTAGAATATGTTCCAGTAAAG
GACATAATTGATTGATGTAAAAGGTGAATGGAGAACCACATTGCAGCAAG
TATCGGTCCAGTAAAAGCGGACCCCCTCCCCCCCCACCCCCCCCCAACCC
CTCACCCCCTCACCCCCACCCCGCCCCACCCCCTCACCCCCACCCCGCCC
CCGCTTATTAACTTGACTTTGCCGAGGAGTGTACACAGTTGGAGCTTGAA
GTCAGCTTGCTTGTTTGTATAGCCCTCAACATGGGCCCAATGAGTAAAAT
GTTTTTTTTTTGTTTTTTTATGAGCGTTAGAGCTGTAGTCCTAATATATT
GCGGCAAGTCGCTTAACCTACGAATGAGATTCCGGTAGGTCAATTCACCG
TCCCTAGTCTCCACGTAGAGAGAAATATATGAGTGAATTAGGAAAAAATC
GAAGCATTGGTCAATAGGCGATGTCAATCCCATGAGATGGAGGTTGGCCT
GAACAGATGAGGGATGAGGGAGATGGGGCAGGTGAACACGTTTTTTTTTT
TTTTTTTTTTAAGCCACAATTTGGCAATGTAAAAAAGAGCGGTTGGGATC
ATTGGAATCGTTCTGATACGAACAAAGCTCCGCTGCATCTTTGCAAGGAC
GCGTAGGCAATTGTCTAACTATAACGACATGCAAAACATTACCACGTCCC
CTCCCCGTCCCCGTCTGCTTCCCTATCATTGAATTAACAGGTGGCACAAC
CCAAGGTCCGAGGGAATATCATTGCCGGAAGCTTGATTGGGGCCACGTTC
GCCCGCAGCTTCGGGGCAGACGGCATGTGGGAGGGCACTGTGGTGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12044:301..1298-

>mRNA_H-paniculata_contig12044.1301.1 ID=mRNA_H-paniculata_contig12044.1301.1|Name=mRNA_H-paniculata_contig12044.1301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig12044:301..1298- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATTGTCCCCACGACCGCTGCTGCAGTTGGGGACATGCAAGCTTACGG
GCTGCTCGCGCCTTCGGTCGAGGAGATTGTCCCCACGACCGCTGCTGCAG
TTGGGGACATGCAAGCTTACGGGCTGCTCGCGCCTTCGGTCGAGGTGGCA
CAACCCAAGGTCCGAGGGAATATCATTGCCGGAAGCTTGATTGGGGCCAC
GTTCGCCCGCAGCTTCGGGGCAGACGGCATGTGGGAGGGCACTGTGGTGA
AGGTGGCACAACCCAAGGTCCGAGGGAATATCATTGCCGGAAGCTTGATT
GGGGCCACGTTCGCCCGCAGCTTCGGGGCAGACGGCATGTGGGAGGGCAC
TGTGGTGAAG
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