mRNA_H-paniculata_contig52751.12654.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52751.12654.1
Unique NamemRNA_H-paniculata_contig52751.12654.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A6D2KD17_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KD17_9BRAS)

HSP 1 Score: 93.6 bits (231), Expect = 1.190e-19
Identity = 49/131 (37.40%), Postives = 77/131 (58.78%), Query Frame = 1
Query:    1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY--GEFPGAVGRLDKAIYGL 387
            E    I +  W  V  S ++ V+ T  IY+ K   DG+++KYK RLVA   +Q +G+ F+E  SP   + ST+MVL +A  ++W LR +D    +LQ  +D+E++V+ P  +   + P  V +L KA+YGL
Sbjct:  817 EYDAQIAHRSWDLVPPSPTQNVIDTKWIYRIKYFSDGLLDKYKSRLVARGFNQQEGVDFEETYSPVIKSTSTRMVLKIAVCKNWRLRQLDVNNAFLQGTLDEEVYVKQPPGFVDPDRPDYVCKLRKALYGL 947          
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 90.9 bits (224), Expect = 9.990e-19
Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = 1
Query:    1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNYGEFPGAVGRLDKAIYGL 387
            E   L++N  +  V+    K  +S   +YK K  E     +YK RLV     Q+ G+ FQE  SP    +S + ++++AA++DW++ H+D +  YL   +++EI+V  P N+ E  G V RL KA+YGL
Sbjct:  247 ERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGD--RRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGL 373          
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A8I6XHP4_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XHP4_HORVV)

HSP 1 Score: 90.9 bits (224), Expect = 1.020e-18
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY---GEFPGAVGRLDKAIYGL 387
            EM+ +  NG WT V R  ++  V    +YK K    G + KYK RLVA    Q +G+ + E  +P     + +++L LAA +DW++ H+D +  +L   + +E++VE P+ Y   GE  G V +L KA+YGL
Sbjct:  689 EMKAIESNGTWTLVTRPPNQKTVGLKWVYKLKKDTKGAIVKYKARLVAKGYVQRQGVDYDEVFAPVARIETVRVLLALAAQEDWKVHHMDVKSAFLNGDLTEEVYVEQPLGYEKKGE-EGKVYKLKKALYGL 819          
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 90.9 bits (224), Expect = 1.050e-18
Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = 1
Query:    1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNYGEFPGAVGRLDKAIYGL 387
            E   L++N  +  V+    K  +S   +YK K  E     +YK RLV     Q+ G+ FQE  SP    +S + ++++AA++DW++ H+D +  YL   +++EI+V  P N+ E  G V RL KA+YGL
Sbjct:  852 ERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGD--RRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGL 978          
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A5A7TC06_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TC06_CUCME)

HSP 1 Score: 89.0 bits (219), Expect = 4.600e-18
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 1
Query:    1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY--GEFPGAVGRLDKAIYGL 387
            EM  + +NG W  V+  K K  +    +YK K   DG +EK+K RLVA  + Q  GI+F+E  SP     + ++VL LAA Q W +   D +  +L   +++E++VE P  +   +    V +L KA+YGL
Sbjct:  459 EMTTIEKNGTWKMVDLPKGKNAIDLKWVYKTKFAADGSLEKHKARLVAKGHAQQHGINFEETFSPVARFETVRVVLALAAQQQWSVYQFDVKSDFLNEELEEEVYVEQPKGFVKKDSEEKVYKLTKALYGL 589          
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A5K0XK81_9MAGN (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0XK81_9MAGN)

HSP 1 Score: 88.6 bits (218), Expect = 4.620e-18
Identity = 45/129 (34.88%), Postives = 73/129 (56.59%), Query Frame = 1
Query:    1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNYGE--FPGAVGRLDKAIY 381
            EM  LI N  WT V R  S  ++ +  +YK K+  DG +++ K RLVA    QI+G+ F E  SP    A+ ++VL++A +  W L+H+D +   L   + + +F+E P  + +  FP  V +L+ A+Y
Sbjct:  304 EMAALIANDTWTLVPRDPSMHIIGSRWVYKTKLNSDGHIDRLKARLVAQGYTQIEGVDFLETFSPVVKPATIRIVLSVALMNGWPLKHLDVKNALLNGYLTEIVFIEQPPGFQDAWFPHQVCKLNPALY 432          
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A2N9GHR4_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GHR4_FAGSY)

HSP 1 Score: 88.6 bits (218), Expect = 6.820e-18
Identity = 47/131 (35.88%), Postives = 69/131 (52.67%), Query Frame = 1
Query:    1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY--GEFPGAVGRLDKAIYGL 387
            E Q L     WT V  S  + +V    +YK K   DG + +YK RLVA   HQ  G+ F E  SP    A+ +++L+LAA Q W LR +D    +L   + + +++E P  +    +P  V +L KA+YGL
Sbjct: 1239 EFQALQRQETWTLVPPSSEQNLVGCRWVYKLKRNSDGSIARYKARLVAKGYHQQPGMDFDETFSPVVKPATVRLILSLAAQQQWSLRQLDVSNAFLHGLLKETVYMEQPPGFVDSSYPHHVCKLQKALYGL 1369          
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A2N9GGA8_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GGA8_FAGSY)

HSP 1 Score: 87.4 bits (215), Expect = 1.600e-17
Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   31 WTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY--GEFPGAVGRLDKAIYGL 387
            WT V  S S+ +V    +YK K   DG +  YK RLVA   HQ  G+ F E  SP    A+ +++L++AA Q+W LR +D    +L   + + +++E P  Y   +FP  V +L KA+YGL
Sbjct:  250 WTLVPPSPSQNIVGCRWVYKLKRNSDGSISSYKARLVAKGYHQQHGMDFDETFSPVVKLATLRLILSIAAQQNWGLRQLDVSNAFLHGFLKETVYMEQPQGYVDSQFPHHVCQLKKALYGL 370          
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: UPI0008FD5801 (uncharacterized protein LOC109116481 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD5801)

HSP 1 Score: 86.7 bits (213), Expect = 1.910e-17
Identity = 48/135 (35.56%), Postives = 72/135 (53.33%), Query Frame = 1
Query:    1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY-----GEFP-GAVGRLDKAIYGL 387
            E+  L+ NG W+ V     K  V    +YK K   DG +E+YK RLVA    Q +G+ F +  SP     + K++L LAA Q+W L  +D    +L   +++EI++ +P  Y     G  P  AV +L K++YGL
Sbjct:    4 ELDALVGNGTWSVVSLPPGKRAVGCKWVYKIKRKADGSVERYKARLVAKGFTQQEGVDFIDTFSPVAKLVTVKLLLALAAKQNWILTQMDVTNAFLHGDLEEEIYMSLPPGYTDAQSGNMPRDAVCKLQKSLYGL 138          
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A2N9IXX5_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IXX5_FAGSY)

HSP 1 Score: 87.0 bits (214), Expect = 2.270e-17
Identity = 43/131 (32.82%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY--GEFPGAVGRLDKAIYGL 387
            E Q L     WT V  S ++ +V    +YK K   DG + +YK RLVA   HQ +G+ + E  SP    A+ +++L++AA Q+W L+ +D    +L   + + ++++ P  +   ++P  V +L KA+YGL
Sbjct:  396 EFQALQRQNTWTLVPSSSTQNLVGCRWVYKLKRNSDGSIARYKARLVAKGYHQQQGMDYDETFSPVVKPATVRLILSIAAQQNWSLKQLDVSNAFLHGLLKENVYMQQPPGFIDPQYPKHVCQLQKALYGL 526          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2KD17_9BRAS1.190e-1937.40Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6H5GI29_9HEMI9.990e-1935.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8I6XHP4_HORVV1.020e-1836.36Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
A0A6H5GGZ1_9HEMI1.050e-1835.66Integrase catalytic domain-containing protein (Fra... [more]
A0A5A7TC06_CUCME4.600e-1835.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A5K0XK81_9MAGN4.620e-1834.88Integrase catalytic domain-containing protein (Fra... [more]
A0A2N9GHR4_FAGSY6.820e-1835.88Uncharacterized protein n=2 Tax=Fagus sylvatica Ta... [more]
A0A2N9GGA8_FAGSY1.600e-1738.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0008FD58011.910e-1735.56uncharacterized protein LOC109116481 n=1 Tax=Taren... [more]
A0A2N9IXX5_FAGSY2.270e-1732.82CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52751contigH-paniculata_contig52751:1..387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.0
Seed ortholog evalue2.1e-16
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size387
Cds size384
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930529.7046804-CDS-H-paniculata_contig52751:0..3841622930529.7046804-CDS-H-paniculata_contig52751:0..384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52751 1..384 -
1691481333.9007049-CDS-H-paniculata_contig52751:0..3841691481333.9007049-CDS-H-paniculata_contig52751:0..384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52751 1..384 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930529.7203453-UTR-H-paniculata_contig52751:384..3871622930529.7203453-UTR-H-paniculata_contig52751:384..387Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52751 385..387 -
1691481333.9109333-UTR-H-paniculata_contig52751:384..3871691481333.9109333-UTR-H-paniculata_contig52751:384..387Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52751 385..387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52751.12654.1prot_H-paniculata_contig52751.12654.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52751 1..384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52751.12654.1

>prot_H-paniculata_contig52751.12654.1 ID=prot_H-paniculata_contig52751.12654.1|Name=mRNA_H-paniculata_contig52751.12654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
MQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRN
HQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPID
QEIFVEIPVNYGEFPGAVGRLDKAIYGL
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mRNA from alignment at H-paniculata_contig52751:1..387-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52751.12654.1 ID=mRNA_H-paniculata_contig52751.12654.1|Name=mRNA_H-paniculata_contig52751.12654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at H-paniculata_contig52751:1..387- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATGCAAGGCCTCATCGAAAACGGGGTTTGGACACAAGTGGAGCGCTC GAAGAGCAAGCTGGTTGTGAGCACGATGATGATCTACAAAAGGAAAATCG GCGAGGACGGAATAATGGAGAAATACAAGTACCGCCTGGTCGCCCACAGG AACCATCAGATCAAGGGCATCCACTTCCAGGAAGCTTCGTCCCCTGCACC CGCAGCGGCCAGCACAAAAATGGTGTTGACGCTTGCGGCAATCCAGGATT GGGAGCTTCGGCACGTCGACTTTGAAAAAACGTACCTGCAGGCGCCCATC GACCAGGAGATTTTCGTCGAAATTCCCGTAAACTACGGGGAGTTCCCAGG AGCGGTGGGGCGCCTCGACAAGGCAATCTATGGATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig52751:1..387-

>mRNA_H-paniculata_contig52751.12654.1 ID=mRNA_H-paniculata_contig52751.12654.1|Name=mRNA_H-paniculata_contig52751.12654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig52751:1..387- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGGCCTCATCGAAAACGGGGTTTGGACACAAGTGGAGCGCTCGAA
GAGCAAGCTGGTTGTGAGCACGATGATGATCTACAAAAGGAAAATCGGCG
AGGACGGAATAATGGAGAAATACAAGTACCGCCTGGTCGCCCACAGGAAC
CATCAGATCAAGGGCATCCACTTCCAGGAAGCTTCGTCCCCTGCACCCGC
AGCGGCCAGCACAAAAATGGTGTTGACGCTTGCGGCAATCCAGGATTGGG
AGCTTCGGCACGTCGACTTTGAAAAAACGTACCTGCAGGCGCCCATCGAC
CAGGAGATTTTCGTCGAAATTCCCGTAAACTACGGGGAGTTCCCAGGAGC
GGTGGGGCGCCTCGACAAGGCAATCTATGGATTGATGCAAGGCCTCATCG
AAAACGGGGTTTGGACACAAGTGGAGCGCTCGAAGAGCAAGCTGGTTGTG
AGCACGATGATGATCTACAAAAGGAAAATCGGCGAGGACGGAATAATGGA
GAAATACAAGTACCGCCTGGTCGCCCACAGGAACCATCAGATCAAGGGCA
TCCACTTCCAGGAAGCTTCGTCCCCTGCACCCGCAGCGGCCAGCACAAAA
ATGGTGTTGACGCTTGCGGCAATCCAGGATTGGGAGCTTCGGCACGTCGA
CTTTGAAAAAACGTACCTGCAGGCGCCCATCGACCAGGAGATTTTCGTCG
AAATTCCCGTAAACTACGGGGAGTTCCCAGGAGCGGTGGGGCGCCTCGAC
AAGGCAATCTATGGATTG
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