mRNA_H-paniculata_contig52751.12654.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A6D2KD17_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KD17_9BRAS) HSP 1 Score: 93.6 bits (231), Expect = 1.190e-19 Identity = 49/131 (37.40%), Postives = 77/131 (58.78%), Query Frame = 1
Query: 1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY--GEFPGAVGRLDKAIYGL 387
E I + W V S ++ V+ T IY+ K DG+++KYK RLVA +Q +G+ F+E SP + ST+MVL +A ++W LR +D +LQ +D+E++V+ P + + P V +L KA+YGL
Sbjct: 817 EYDAQIAHRSWDLVPPSPTQNVIDTKWIYRIKYFSDGLLDKYKSRLVARGFNQQEGVDFEETYSPVIKSTSTRMVLKIAVCKNWRLRQLDVNNAFLQGTLDEEVYVKQPPGFVDPDRPDYVCKLRKALYGL 947
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI) HSP 1 Score: 90.9 bits (224), Expect = 9.990e-19 Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = 1
Query: 1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNYGEFPGAVGRLDKAIYGL 387
E L++N + V+ K +S +YK K E +YK RLV Q+ G+ FQE SP +S + ++++AA++DW++ H+D + YL +++EI+V P N+ E G V RL KA+YGL
Sbjct: 247 ERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGD--RRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGL 373
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A8I6XHP4_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XHP4_HORVV) HSP 1 Score: 90.9 bits (224), Expect = 1.020e-18 Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 1
Query: 1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY---GEFPGAVGRLDKAIYGL 387
EM+ + NG WT V R ++ V +YK K G + KYK RLVA Q +G+ + E +P + +++L LAA +DW++ H+D + +L + +E++VE P+ Y GE G V +L KA+YGL
Sbjct: 689 EMKAIESNGTWTLVTRPPNQKTVGLKWVYKLKKDTKGAIVKYKARLVAKGYVQRQGVDYDEVFAPVARIETVRVLLALAAQEDWKVHHMDVKSAFLNGDLTEEVYVEQPLGYEKKGE-EGKVYKLKKALYGL 819
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI) HSP 1 Score: 90.9 bits (224), Expect = 1.050e-18 Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = 1
Query: 1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNYGEFPGAVGRLDKAIYGL 387
E L++N + V+ K +S +YK K E +YK RLV Q+ G+ FQE SP +S + ++++AA++DW++ H+D + YL +++EI+V P N+ E G V RL KA+YGL
Sbjct: 852 ERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGD--RRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGL 978
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A5A7TC06_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TC06_CUCME) HSP 1 Score: 89.0 bits (219), Expect = 4.600e-18 Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 1
Query: 1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY--GEFPGAVGRLDKAIYGL 387
EM + +NG W V+ K K + +YK K DG +EK+K RLVA + Q GI+F+E SP + ++VL LAA Q W + D + +L +++E++VE P + + V +L KA+YGL
Sbjct: 459 EMTTIEKNGTWKMVDLPKGKNAIDLKWVYKTKFAADGSLEKHKARLVAKGHAQQHGINFEETFSPVARFETVRVVLALAAQQQWSVYQFDVKSDFLNEELEEEVYVEQPKGFVKKDSEEKVYKLTKALYGL 589
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A5K0XK81_9MAGN (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0XK81_9MAGN) HSP 1 Score: 88.6 bits (218), Expect = 4.620e-18 Identity = 45/129 (34.88%), Postives = 73/129 (56.59%), Query Frame = 1
Query: 1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNYGE--FPGAVGRLDKAIY 381
EM LI N WT V R S ++ + +YK K+ DG +++ K RLVA QI+G+ F E SP A+ ++VL++A + W L+H+D + L + + +F+E P + + FP V +L+ A+Y
Sbjct: 304 EMAALIANDTWTLVPRDPSMHIIGSRWVYKTKLNSDGHIDRLKARLVAQGYTQIEGVDFLETFSPVVKPATIRIVLSVALMNGWPLKHLDVKNALLNGYLTEIVFIEQPPGFQDAWFPHQVCKLNPALY 432
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A2N9GHR4_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GHR4_FAGSY) HSP 1 Score: 88.6 bits (218), Expect = 6.820e-18 Identity = 47/131 (35.88%), Postives = 69/131 (52.67%), Query Frame = 1
Query: 1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY--GEFPGAVGRLDKAIYGL 387
E Q L WT V S + +V +YK K DG + +YK RLVA HQ G+ F E SP A+ +++L+LAA Q W LR +D +L + + +++E P + +P V +L KA+YGL
Sbjct: 1239 EFQALQRQETWTLVPPSSEQNLVGCRWVYKLKRNSDGSIARYKARLVAKGYHQQPGMDFDETFSPVVKPATVRLILSLAAQQQWSLRQLDVSNAFLHGLLKETVYMEQPPGFVDSSYPHHVCKLQKALYGL 1369
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A2N9GGA8_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GGA8_FAGSY) HSP 1 Score: 87.4 bits (215), Expect = 1.600e-17 Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 1
Query: 31 WTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY--GEFPGAVGRLDKAIYGL 387
WT V S S+ +V +YK K DG + YK RLVA HQ G+ F E SP A+ +++L++AA Q+W LR +D +L + + +++E P Y +FP V +L KA+YGL
Sbjct: 250 WTLVPPSPSQNIVGCRWVYKLKRNSDGSISSYKARLVAKGYHQQHGMDFDETFSPVVKLATLRLILSIAAQQNWGLRQLDVSNAFLHGFLKETVYMEQPQGYVDSQFPHHVCQLKKALYGL 370
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: UPI0008FD5801 (uncharacterized protein LOC109116481 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD5801) HSP 1 Score: 86.7 bits (213), Expect = 1.910e-17 Identity = 48/135 (35.56%), Postives = 72/135 (53.33%), Query Frame = 1
Query: 1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY-----GEFP-GAVGRLDKAIYGL 387
E+ L+ NG W+ V K V +YK K DG +E+YK RLVA Q +G+ F + SP + K++L LAA Q+W L +D +L +++EI++ +P Y G P AV +L K++YGL
Sbjct: 4 ELDALVGNGTWSVVSLPPGKRAVGCKWVYKIKRKADGSVERYKARLVAKGFTQQEGVDFIDTFSPVAKLVTVKLLLALAAKQNWILTQMDVTNAFLHGDLEEEIYMSLPPGYTDAQSGNMPRDAVCKLQKSLYGL 138
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Match: A0A2N9IXX5_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IXX5_FAGSY) HSP 1 Score: 87.0 bits (214), Expect = 2.270e-17 Identity = 43/131 (32.82%), Postives = 73/131 (55.73%), Query Frame = 1
Query: 1 EMQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNHQIKGIHFQEASSPAPAAASTKMVLTLAAIQDWELRHVDFEKTYLQAPIDQEIFVEIPVNY--GEFPGAVGRLDKAIYGL 387
E Q L WT V S ++ +V +YK K DG + +YK RLVA HQ +G+ + E SP A+ +++L++AA Q+W L+ +D +L + + ++++ P + ++P V +L KA+YGL
Sbjct: 396 EFQALQRQNTWTLVPSSSTQNLVGCRWVYKLKRNSDGSIARYKARLVAKGYHQQQGMDYDETFSPVVKPATVRLILSIAAQQNWSLKQLDVSNAFLHGLLKENVYMQQPPGFIDPQYPKHVCQLQKALYGL 526 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52751.12654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig52751.12654.1 >prot_H-paniculata_contig52751.12654.1 ID=prot_H-paniculata_contig52751.12654.1|Name=mRNA_H-paniculata_contig52751.12654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp MQGLIENGVWTQVERSKSKLVVSTMMIYKRKIGEDGIMEKYKYRLVAHRNback to top mRNA from alignment at H-paniculata_contig52751:1..387- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig52751.12654.1 ID=mRNA_H-paniculata_contig52751.12654.1|Name=mRNA_H-paniculata_contig52751.12654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at H-paniculata_contig52751:1..387- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig52751:1..387- >mRNA_H-paniculata_contig52751.12654.1 ID=mRNA_H-paniculata_contig52751.12654.1|Name=mRNA_H-paniculata_contig52751.12654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig52751:1..387- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |