mRNA_H-paniculata_contig51895.12530.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51895.12530.1
Unique NamemRNA_H-paniculata_contig51895.12530.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig51895.12530.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 356 bits (914), Expect = 7.520e-116
Identity = 184/368 (50.00%), Postives = 250/368 (67.93%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRFDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWLSGMTRPYIPSAVREVAKHAHNPSDRFWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVLEFLQPQLSGRIITMFEDNQGAKAMAENPTSAGRSKHIDVRYHFIRQLIAREILRVEYKKGEDQPADILTKPLERGSFERHRRFLMN 1101
            +V+  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR  K+ VV        D ++VAG    C  L A+L   F T   GE  W+ GCA  RD+  G +RI+Q  ++D++V RFDV++ S++PAS   D+GP+R+DE   + PVR A+GS++W+S  +RP I  AVR VA+HAH P++R WKA+VKI++YLK T+DLG+ +ERG  L L+VYVDA YAD  + RRSVSG+A  +GG+V+S  S TQ  V+LS++EAEY+A  +G K ALF RAVL F+ P+ SG  I + EDNQGA A+ +NP S+ RSKHIDVRYHFIR L     + +++    +Q AD+LTK L + S + HRR LMN
Sbjct:  141 VVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506          
BLAST of mRNA_H-paniculata_contig51895.12530.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 2.660e-114
Identity = 191/371 (51.48%), Postives = 260/371 (70.08%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRFDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWLSGMTRPYIPSAVREVAKHAHNPSDRFWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVLEFLQPQLSGRIITMFEDNQGAKAMAENPTSAGRSKHIDVRYHFIRQLIAREILRVEYKKGEDQPADILTKPLERGSFERHRRFLMNLPE 1110
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++D++V+RFDV++ S +PA+  ADLGP+REDE+  + PVR A+GS++W+S  +RP +  AVR VA+HAH P+ R W A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSVSG+A  +GG+VVS  S TQ  V+LS++EAEY+A  +G K ALF RAVL F+ P+ SG  I + EDNQGA A+ +NP S+GR+KHIDVRYHFIR L     + V++    +Q AD+LTK L R S + HRR LMNLPE
Sbjct:  878 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1246          
BLAST of mRNA_H-paniculata_contig51895.12530.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 1.220e-112
Identity = 191/371 (51.48%), Postives = 260/371 (70.08%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRFDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWLSGMTRPYIPSAVREVAKHAHNPSDRFWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVLEFLQPQLSGRIITMFEDNQGAKAMAENPTSAGRSKHIDVRYHFIRQLIAREILRVEYKKGEDQPADILTKPLERGSFERHRRFLMNLPE 1110
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++D++V+RFDV++ S +PA+  ADLGP+REDE+  + PVR A+GS++W+S  +RP +  AVR VA+HAH P+ R W A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSVSG+A  +GG+VVS  S TQ  V+LS++EAEY+A  +G K ALF RAVL F+ P+ SG  I + EDNQGA A+ +NP S+GR+KHIDVRYHFIR L     + V++    +Q AD+LTK L R S + HRR LMNLPE
Sbjct: 1257 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1625          
BLAST of mRNA_H-paniculata_contig51895.12530.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 2.670e-112
Identity = 191/371 (51.48%), Postives = 260/371 (70.08%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRFDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWLSGMTRPYIPSAVREVAKHAHNPSDRFWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVLEFLQPQLSGRIITMFEDNQGAKAMAENPTSAGRSKHIDVRYHFIRQLIAREILRVEYKKGEDQPADILTKPLERGSFERHRRFLMNLPE 1110
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++D++V+RFDV++ S +PA+  ADLGP+REDE+  + PVR A+GS++W+S  +RP +  AVR VA+HAH P+ R W A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSVSG+A  +GG+VVS  S TQ  V+LS++EAEY+A  +G K ALF RAVL F+ P+ SG  I + EDNQGA A+ +NP S+GR+KHIDVRYHFIR L     + V++    +Q AD+LTK L R S + HRR LMNLPE
Sbjct: 1420 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1788          
BLAST of mRNA_H-paniculata_contig51895.12530.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 352 bits (903), Expect = 5.580e-111
Identity = 185/371 (49.87%), Postives = 253/371 (68.19%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRFDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWLSGMTRPYIPSAVREVAKHAHNPSDRFWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVLEFLQPQLSGRIITMFEDNQGAKAMAENPTSAGRSKHIDVRYHFIRQLIAREILRVEYKKGEDQPADILTKPLERGSFERHRRFLMNLPE 1110
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++D++V+RFDV++ S +PA+  ADLGP+RED+   + PVR AVGS++W+S  +RP +  AVR VA+HAH P+ R W A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSVS +A  +GG+VVS  S  +  V+LS++EAEY+A  +G K ALF RAVL F+ P+  G  I + EDNQGA A+ +NP S+G  KHIDVR+HFIR L       V++    +Q ADILT+ L R S + HRR LMNLPE
Sbjct:  469 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYADTED-RRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQALSRASLQYHRRKLMNLPE 837          
BLAST of mRNA_H-paniculata_contig51895.12530.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 5.670e-109
Identity = 179/358 (50.00%), Postives = 246/358 (68.72%), Query Frame = 1
Query:   40 AGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRFDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWLSGMTRPYIPSAVREVAKHAHNPSDRFWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVLEFLQPQLSGRIITMFEDNQGAKAMAENPTSAGRSKHIDVRYHFIRQLIAREILRVEYKKGEDQPADILTKPLERGSFERHRRFLMNLPE 1110
            +GR W     + LV N  + Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++D++V RFDV++ S +PA+  ADLGP+REDE+  + PVR A+GS++W+S  +RP +  AVR VA+HAH P+ R W A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSVSG+A  +GG+VVS  S TQ  V+LS+ EAEY+A  +G K ALF RAVL F+ P+  G  I + EDNQGA A+ +NP S+GR+ HIDVR+HFIR L     + V++    +Q AD+LTK L + S + HRR LMNLPE
Sbjct:  402 SGRQWGYHAADTLVEN-RVEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMALVQNPLSSGRTTHIDVRFHFIRGLFGSGDISVKFVPTTEQHADLLTKALRKASLQYHRRKLMNLPE 757          
BLAST of mRNA_H-paniculata_contig51895.12530.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 353 bits (905), Expect = 2.380e-106
Identity = 187/372 (50.27%), Postives = 252/372 (67.74%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGV-VRITQRTFVDTVVKRFDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWLSGMTRPYIPSAVREVAKHAHNPSDRFWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVLEFLQPQLSGRIITMFEDNQGAKAMAENPTSAGRSKHIDVRYHFIRQLIAREILRVEYKKGEDQPADILTKPLERGSFERHRRFLMNLPE 1110
            +V+  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR  K+ VV        D ++VAG    C  L A+L   F T   GE  W+ GCA  RD+  G+ +RI+Q  ++D +V RFDV++ S++PAS   D+GP+R+DE   + PVR A+GS++W+S  +RP I  AVR VA+HAH P++R WKA+VKI++YLK T+DLG+ +ERG  L L VYVDA YAD  + RRSVSG+A  +GG+V+S  S TQ  V+LS++EAEY+A  +G K ALF RAVL F+ P+ SG  I + EDNQGA A+ +NP S+ RSKHIDVRYHFIR L     + +++    +Q AD+LTK L + S + HRR LMNLPE
Sbjct: 1530 VVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGMTLRISQTAYID-IVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 1898          
BLAST of mRNA_H-paniculata_contig51895.12530.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 6.860e-106
Identity = 174/370 (47.03%), Postives = 242/370 (65.41%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRFDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWLSGMTRPYIPSAVREVAKHAHNPSDRFWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVLEFLQPQLSGRIITMFEDNQGAKAMAENPTSAGRSKHIDVRYHFIRQLIAREILRVEYKKGEDQPADILTKPLERGSFERHRRFLMNLP 1107
            +V++ +A+Y LKQ+GR W     + L+ N G  Q + DPCVFR   +G V  ++ ++VDD++VA    + + LFA+L  +F     GE  WY GCA   D+  G+ +++Q  +V++++KRFDV T +  PA+  ADLGP+R+DE   DKPVR A+G L+W   +TRP I   + ++ K A +P+ R W A+V+I+SYL  TKD G+ + RG  L+LSV+VDA YAD    RRS +G+AV +GG+VV A++ TQ     STSEAEY+A  +G K ALF R VL F+ P+ SG  I + EDN+GA AM ENP S+ RSKHIDVR+HFIR+L     +  EY    +Q AD+LTK L R   E HR+ LMNLP
Sbjct:    5 VVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAQSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLSVFVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTSEAEYMAAGEGVKEALFVRGVLSFIAPETSGAKIKVLEDNKGALAMFENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGREKSEYHRKALMNLP 372          
BLAST of mRNA_H-paniculata_contig51895.12530.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 350 bits (899), Expect = 9.840e-106
Identity = 181/356 (50.84%), Postives = 249/356 (69.94%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRFDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWLSGMTRPYIPSAVREVAKHAHNPSDRFWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVLEFLQPQLSGRIITMFEDNQGAKAMAENPTSAGRSKHIDVRYHFIRQLIAREILRVEYKKGEDQPADILTKPLER 1065
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++D++V+RFDV++ S +PA+  ADLGP+REDE+  + PVR A+GS++W+S  +RP +  AVR VA+HAH P+ R W A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSVSG+A  +GG+VVS  S TQ  V+LS++EAEY+A  +G K ALF RAVL F+ P+ SG  I + EDNQGA A+ +NP S+GR+KHIDVRYHFIR L     + V++    +Q AD+LTK L R
Sbjct: 1277 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSR 1630          
BLAST of mRNA_H-paniculata_contig51895.12530.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 4.080e-105
Identity = 180/366 (49.18%), Postives = 248/366 (67.76%), Query Frame = 1
Query:   16 KAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVVKRFDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSLIWLSGMTRPYIPSAVREVAKHAHNPSDRFWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKAALFTRAVLEFLQPQLSGRIITMFEDNQGAKAMAENPTSAGRSKHIDVRYHFIRQLIAREILRVEYKKGEDQPADILTKPLERGSFERHRRFLMNLPE 1110
            +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + V  MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++ ++VKRFDV++ S +PA+   DL P+REDE+  + P R A+GS++W+S  + P +  AVR VA+HAH P+ R W A+ K + YLK T+DLG+ ++RG  L L++YVDA YAD  + RRSVSG+A  +GG+VVS  S TQ  V+LS++EAEY+A  +G K ALF RAVL F+ P+ SG  I + EDNQGA A+ +NP S+GR+KHIDV +HFIR L     + V++    +Q AD+LTK L R S   HRR LM LPE
Sbjct:  912 RAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVAVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVKGGTLRISQTAYIGSMVKRFDVQSTSRIPATPGVDLVPKREDEEGGEWPRREAIGSMMWVSTFSLPDVSFAVRAVARHAHAPAKRHWDAIQKTLGYLKETRDLGIAYQRGSGLGLAMYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVTFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLLYHRRKLMKLPE 1275          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51895.12530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE7.520e-11650.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE2.660e-11451.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.220e-11251.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.670e-11251.48Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JQN6_9PHAE5.580e-11149.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K274_9PHAE5.670e-10950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGF7_9PHAE2.380e-10650.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWY8_9PHAE6.860e-10647.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JN00_9PHAE9.840e-10650.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L060_9PHAE4.080e-10549.18Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51895contigH-paniculata_contig51895:138..1250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score208.8
Seed ortholog evalue4.4e-51
Seed eggNOG ortholog7029.ACYPI088512-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size1113
Cds size1092
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930513.393731-CDS-H-paniculata_contig51895:137..12291622930513.393731-CDS-H-paniculata_contig51895:137..1229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51895 138..1229 -
1691481326.141427-CDS-H-paniculata_contig51895:137..12291691481326.141427-CDS-H-paniculata_contig51895:137..1229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51895 138..1229 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930513.4103909-UTR-H-paniculata_contig51895:1229..12501622930513.4103909-UTR-H-paniculata_contig51895:1229..1250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51895 1230..1250 -
1691481326.1519287-UTR-H-paniculata_contig51895:1229..12501691481326.1519287-UTR-H-paniculata_contig51895:1229..1250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51895 1230..1250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51895.12530.1prot_H-paniculata_contig51895.12530.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51895 138..1229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51895.12530.1

>prot_H-paniculata_contig51895.12530.1 ID=prot_H-paniculata_contig51895.12530.1|Name=mRNA_H-paniculata_contig51895.12530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=364bp
MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVH
VDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGVVRI
TQRTFVDTVVKRFDVETESNLPASQQADLGPRREDEDLSDKPVRSAVGSL
IWLSGMTRPYIPSAVREVAKHAHNPSDRFWKAVVKIISYLKRTKDLGLVF
ERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTL
STSEAEYVAMAQGAKAALFTRAVLEFLQPQLSGRIITMFEDNQGAKAMAE
NPTSAGRSKHIDVRYHFIRQLIAREILRVEYKKGEDQPADILTKPLERGS
FERHRRFLMNLPE*
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mRNA from alignment at H-paniculata_contig51895:138..1250-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51895.12530.1 ID=mRNA_H-paniculata_contig51895.12530.1|Name=mRNA_H-paniculata_contig51895.12530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1113bp|location=Sequence derived from alignment at H-paniculata_contig51895:138..1250- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTAAGGCTGAATAAGGCTATGTATGGGCTCAAGCAGGCAGGACGGAT GTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAACAACGTCGGCATGACGC AATCCAAGTCTGACCCTTGTGTGTTTAGGCTCGAGAAAAATGGGGTGGTA GATATGATTCTGTGTGTTCATGTAGATGATGTAATTGTTGCTGGTAAAAG TGTGAAGTGCGATTCTCTGTTTGCAGCGTTGAGGGCGGAGTTCCAAACCA CGAGAGGCGAACTCAAGTGGTACCTGGGTTGTGCATTTTGGCGTGACATA GTGAGGGGAGTTGTCCGCATCACGCAACGGACATTCGTTGATACTGTCGT TAAACGCTTCGACGTGGAAACCGAGTCTAACCTTCCTGCGTCTCAGCAGG CAGATCTTGGGCCTAGGAGGGAGGATGAGGATTTGTCTGACAAGCCTGTG CGCTCGGCTGTTGGGAGTTTGATATGGCTAAGTGGTATGACGAGACCTTA CATACCCAGCGCAGTCCGGGAAGTAGCCAAGCACGCGCACAATCCGTCCG ACAGGTTCTGGAAAGCAGTGGTAAAGATCATCTCGTATCTTAAGAGAACA AAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAATTTGTCAGT TTATGTAGACGCAGATTATGCGGATAAGTCCAACTGGAGGCGTTCAGTTT CAGGCGTGGCAGTAATGTTAGGGGGGAGTGTAGTGAGCGCTACCAGCACG ACACAACACTGTGTGACTCTTTCCACTAGTGAGGCAGAGTACGTAGCTAT GGCGCAAGGGGCTAAGGCAGCACTTTTCACGAGAGCTGTACTAGAGTTCT TGCAGCCGCAACTTTCTGGTAGGATAATTACGATGTTTGAAGACAACCAG GGAGCAAAAGCTATGGCTGAGAATCCGACTAGTGCGGGTAGGAGCAAGCA CATAGACGTAAGGTATCACTTTATTCGACAGTTGATTGCAAGGGAAATTT TAAGGGTAGAATACAAGAAGGGTGAGGACCAGCCGGCTGACATTCTGACT AAACCGCTCGAGCGCGGGTCGTTTGAACGACATCGTCGTTTCTTGATGAA TTTGCCTGAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig51895:138..1250-

>mRNA_H-paniculata_contig51895.12530.1 ID=mRNA_H-paniculata_contig51895.12530.1|Name=mRNA_H-paniculata_contig51895.12530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2184bp|location=Sequence derived from alignment at H-paniculata_contig51895:138..1250- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGGGCTCAAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGA
AGTACTCGTAAACAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTG
TGTTTAGGCTCGAGAAAAATGGGGTGGTAGATATGATTCTGTGTGTTCAT
GTAGATGATGTAATTGTTGCTGGTAAAAGTGTGAAGTGCGATTCTCTGTT
TGCAGCGTTGAGGGCGGAGTTCCAAACCACGAGAGGCGAACTCAAGTGGT
ACCTGGGTTGTGCATTTTGGCGTGACATAGTGAGGGGAGTTGTCCGCATC
ACGCAACGGACATTCGTTGATACTGTCGTTAAACGCTTCGACGTGGAAAC
CGAGTCTAACCTTCCTGCGTCTCAGCAGGCAGATCTTGGGCCTAGGAGGG
AGGATGAGGATTTGTCTGACAAGCCTGTGCGCTCGGCTGTTGGGAGTTTG
ATATGGCTAAGTGGTATGACGAGACCTTACATACCCAGCGCAGTCCGGGA
AGTAGCCAAGCACGCGCACAATCCGTCCGACAGGTTCTGGAAAGCAGTGG
TAAAGATCATCTCGTATCTTAAGAGAACAAAAGACTTGGGGCTAGTGTTC
GAAAGGGGTAGAGATCTTAATTTGTCAGTTTATGTAGACGCAGATTATGC
GGATAAGTCCAACTGGAGGCGTTCAGTTTCAGGCGTGGCAGTAATGTTAG
GGGGGAGTGTAGTGAGCGCTACCAGCACGACACAACACTGTGTGACTCTT
TCCACTAGTGAGGCAGAGTACGTAGCTATGGCGCAAGGGGCTAAGGCAGC
ACTTTTCACGAGAGCTGTACTAGAGTTCTTGCAGCCGCAACTTTCTGGTA
GGATAATTACGATGTTTGAAGACAACCAGGGAGCAAAAGCTATGGCTGAG
AATCCGACTAGTGCGGGTAGGAGCAAGCACATAGACGTAAGGTATCACTT
TATTCGACAGTTGATTGCAAGGGAAATTTTAAGGGTAGAATACAAGAAGG
GTGAGGACCAGCCGGCTGACATTCTGACTAAACCGCTCGAGCGCGGGTCG
TTTGAACGACATCGTCGTTTCTTGATGAATTTGCCTGAATGAATGTATGG
GCTCAAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGAAGTACTCG
TAAACAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTGTGTTTAGG
CTCGAGAAAAATGGGGTGGTAGATATGATTCTGTGTGTTCATGTAGATGA
TGTAATTGTTGCTGGTAAAAGTGTGAAGTGCGATTCTCTGTTTGCAGCGT
TGAGGGCGGAGTTCCAAACCACGAGAGGCGAACTCAAGTGGTACCTGGGT
TGTGCATTTTGGCGTGACATAGTGAGGGGAGTTGTCCGCATCACGCAACG
GACATTCGTTGATACTGTCGTTAAACGCTTCGACGTGGAAACCGAGTCTA
ACCTTCCTGCGTCTCAGCAGGCAGATCTTGGGCCTAGGAGGGAGGATGAG
GATTTGTCTGACAAGCCTGTGCGCTCGGCTGTTGGGAGTTTGATATGGCT
AAGTGGTATGACGAGACCTTACATACCCAGCGCAGTCCGGGAAGTAGCCA
AGCACGCGCACAATCCGTCCGACAGGTTCTGGAAAGCAGTGGTAAAGATC
ATCTCGTATCTTAAGAGAACAAAAGACTTGGGGCTAGTGTTCGAAAGGGG
TAGAGATCTTAATTTGTCAGTTTATGTAGACGCAGATTATGCGGATAAGT
CCAACTGGAGGCGTTCAGTTTCAGGCGTGGCAGTAATGTTAGGGGGGAGT
GTAGTGAGCGCTACCAGCACGACACAACACTGTGTGACTCTTTCCACTAG
TGAGGCAGAGTACGTAGCTATGGCGCAAGGGGCTAAGGCAGCACTTTTCA
CGAGAGCTGTACTAGAGTTCTTGCAGCCGCAACTTTCTGGTAGGATAATT
ACGATGTTTGAAGACAACCAGGGAGCAAAAGCTATGGCTGAGAATCCGAC
TAGTGCGGGTAGGAGCAAGCACATAGACGTAAGGTATCACTTTATTCGAC
AGTTGATTGCAAGGGAAATTTTAAGGGTAGAATACAAGAAGGGTGAGGAC
CAGCCGGCTGACATTCTGACTAAACCGCTCGAGCGCGGGTCGTTTGAACG
ACATCGTCGTTTCTTGATGAATTTGCCTGAATGA
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