mRNA_H-paniculata_contig46647.11624.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A7M5XDS1_9CNID (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XDS1_9CNID) HSP 1 Score: 94.4 bits (233), Expect = 1.730e-21 Identity = 49/130 (37.69%), Postives = 78/130 (60.00%), Query Frame = 1
Query: 1 RVQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPYEPKGM---LGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
R + N+ ++F + G ++ +LG+ VRRD GII I Q + + VL+R+G+DECR ++TP+E +KP K +GSL+YAS GTRPD++Y+V ++ M P E + +R+FRY+
Sbjct: 73 REKKNLAEKFDMVDQGEINYILGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMDECRPISTPMETGKSFEKLAPDEKPVNLKSYQAAIGSLIYASIGTRPDLSYSVGVLSQYMSHPSEEHWKGVKRVFRYI 202
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A1Y1M4P7_PHOPY (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1M4P7_PHOPY) HSP 1 Score: 88.2 bits (217), Expect = 6.650e-20 Identity = 42/129 (32.56%), Postives = 79/129 (61.24%), Query Frame = 1
Query: 1 RVQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKI-SAPESADKPYEPKGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYLS 384
+++ + +F ++ +G LS LG+++ R+ G ITI+Q + ++L +Y + +C + TP+E K+ + S ES DKPY + +LGSL++A G+RPD+ +A+ +R P + + +R+ RY+S
Sbjct: 4 KIKIELMNKFEMQDIGELSLFLGMKIHRNFEKGEITINQEQYLDKILLKYNMQDCNPIETPMEVKLNLQSEDESCDKPY--RELLGSLLFAMLGSRPDLNFALSYLSRSQNQPTETAWKSLKRVLRYIS 130
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3) HSP 1 Score: 94.0 bits (232), Expect = 8.400e-20 Identity = 47/135 (34.81%), Postives = 78/135 (57.78%), Query Frame = 1
Query: 16 MNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPYEPK------------GMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYLS 384
+ + F + LG ++G+EV+RD I++ Q S + +LK+YG++ CR V+TP++ V ++ D EP+ +GSLMYA+ GTRPDIAYAVQ+ ++ +P ++ +R+FRYL+
Sbjct: 943 LKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKKYGMENCRPVSTPMDPNVVLTRVNENDVKDEPREDRDERLGGRYAAAVGSLMYAAIGTRPDIAYAVQKLSKYSSNPGNSHWTALKRVFRYLA 1077
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: H3G6C9_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G6C9_PHYRM) HSP 1 Score: 90.9 bits (224), Expect = 1.170e-19 Identity = 49/128 (38.28%), Postives = 79/128 (61.72%), Query Frame = 1
Query: 1 RVQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPYEP-KGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
R + ++ RF + G + +LGIE+ D P+G +T+ Q + ++LKR+ +DEC+ V +PV+ ++ ++A K P + +G+LMY T TRPDIAYAV +R M++P E + +RIFRYL
Sbjct: 58 RTKTDLKTRFEMTDSGKCAFVLGIELV-DGPDGSVTMCQRRYVDDILKRFAMDECKAVVSPVDMSTRLVPSDAATKVNAPFREAVGALMYLMTATRPDIAYAVGYVSRFMENPQEEHWVAVKRIFRYL 184
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: H3H7G8_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7G8_PHYRM) HSP 1 Score: 89.0 bits (219), Expect = 1.850e-19 Identity = 48/128 (37.50%), Postives = 79/128 (61.72%), Query Frame = 1
Query: 1 RVQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPYEP-KGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
R + ++ RF + G + +LGIE+ D P+G +T+ Q + ++LKR+ +DEC+ V +PV+ ++ ++A K P + +G+LM+ T TRPDIAYAV +R M++P E + +RIFRYL
Sbjct: 46 RTKTDLKTRFEMTDSGKCAFVLGIELV-DGPDGSVTMCQRRYVDDILKRFAMDECKAVVSPVDMSTRLVPSDAATKVNAPFREAVGALMHLMTATRPDIAYAVGYVSRFMENPQEEHWVAVKRIFRYL 172
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A146HMH3_MYCCL (Polyprotein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HMH3_MYCCL) HSP 1 Score: 92.4 bits (228), Expect = 2.930e-19 Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 34 VKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESA----------DKPYEPKGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
V LG + +LGIEV+RD I +SQ + I +L+RYG+DE + V+TP+E +S+ +S D PY +GSLMY + TRPDIAYAVQ +R +K P + +RIFRYL
Sbjct: 1191 VSDLGEIHWILGIEVKRDRAARTIHLSQRAYIDSILRRYGLDELKPVSTPMETSANLSSSQSPSSTSDLALMRDVPYN--AAVGSLMYCAVATRPDIAYAVQSVSRFLKTPGPAHWDAVKRIFRYL 1314
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A2G8RNC8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RNC8_9APHY) HSP 1 Score: 92.0 bits (227), Expect = 4.000e-19 Identity = 48/136 (35.29%), Postives = 81/136 (59.56%), Query Frame = 1
Query: 1 RVQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPYEPKGM--------LGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYLS 384
RV+ + + F + G + +LG V RD +++SQ + I +++R+G+D+ + ++TP++ V++SA +S E GM +GSL YAS GTRPDI YAV +R +++P R + C+R+FRYL+
Sbjct: 1178 RVKAKLREAFEISDEGEIHWILGFAVIRDRSARTLSLSQTAYIDAIIRRFGLDDAKPLSTPMDPHVQLSAEQSPKTMAEVAGMRNVPYREAVGSLQYASLGTRPDITYAVSVLSRFLENPGRAHWEACKRVFRYLA 1313
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A2W0BH45_9BACT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2W0BH45_9BACT) HSP 1 Score: 88.6 bits (218), Expect = 6.750e-19 Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 4 VQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPY--------EPKGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
++ + +R+++ LG S+ LG+E+ RD + + + Q + I VLKR+ +D+C GV+TP+E ++ A AD+ Y E + LGS+MYA GTRPD+AY + ++ +P E + RIFRYL
Sbjct: 63 IKSQLMKRYKMTDLGPASQFLGLEISRDRESRTLHLHQSTYIKHVLKRFQMDQCNGVSTPMEPNARLHA---ADEGYIALENDILEYQQALGSIMYAMLGTRPDLAYPISSLSKFSINPSFEHAAAIHRIFRYL 193
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: H3H5N2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5N2_PHYRM) HSP 1 Score: 89.0 bits (219), Expect = 7.280e-19 Identity = 48/128 (37.50%), Postives = 79/128 (61.72%), Query Frame = 1
Query: 1 RVQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPYEP-KGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
R + ++ RF + G + +LGIE+ D P+G +T+ Q + ++LKR+ +DEC+ V +PV+ ++ ++A K P + +G+LM+ T TRPDIAYAV +R M++P E + +RIFRYL
Sbjct: 77 RTKTDLKTRFEMTDSGKCAFVLGIELV-DGPDGSVTMCQRRYVDDILKRFAMDECKAVVSPVDMSTRLVPSDAATKVNAPFREAVGALMHLMTATRPDIAYAVGYVSRFMENPQEEHWVAVKRIFRYL 203
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER) HSP 1 Score: 90.9 bits (224), Expect = 1.010e-18 Identity = 51/128 (39.84%), Postives = 76/128 (59.38%), Query Frame = 1
Query: 16 MNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVE-GKVKISAPESADK-----PYEPKGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
+ ++ +K LG +LG+EV+RD G I+ISQ IGEVLKRYG++ C+ V+TP+E G + + ++ PY+ ++GSLMY GTRPDIA+AV + K +S +R+ RYL
Sbjct: 1047 LGEKIELKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVSTPIEPGLTQEESTSQREEQLQGIPYQ--SLIGSLMYLVQGTRPDIAFAVNYLSEFNKSFTSRHWSMAKRVLRYL 1172 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig46647.11624.1 >prot_H-paniculata_contig46647.11624.1 ID=prot_H-paniculata_contig46647.11624.1|Name=mRNA_H-paniculata_contig46647.11624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp MNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECback to top mRNA from alignment at H-paniculata_contig46647:772..1239+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig46647.11624.1 ID=mRNA_H-paniculata_contig46647.11624.1|Name=mRNA_H-paniculata_contig46647.11624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at H-paniculata_contig46647:772..1239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig46647:772..1239+ >mRNA_H-paniculata_contig46647.11624.1 ID=mRNA_H-paniculata_contig46647.11624.1|Name=mRNA_H-paniculata_contig46647.11624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig46647:772..1239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |