mRNA_H-paniculata_contig46647.11624.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46647.11624.1
Unique NamemRNA_H-paniculata_contig46647.11624.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A7M5XDS1_9CNID (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XDS1_9CNID)

HSP 1 Score: 94.4 bits (233), Expect = 1.730e-21
Identity = 49/130 (37.69%), Postives = 78/130 (60.00%), Query Frame = 1
Query:    1 RVQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPYEPKGM---LGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
            R + N+ ++F +   G ++ +LG+ VRRD   GII I Q + +  VL+R+G+DECR ++TP+E           +KP   K     +GSL+YAS GTRPD++Y+V   ++ M  P  E +   +R+FRY+
Sbjct:   73 REKKNLAEKFDMVDQGEINYILGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMDECRPISTPMETGKSFEKLAPDEKPVNLKSYQAAIGSLIYASIGTRPDLSYSVGVLSQYMSHPSEEHWKGVKRVFRYI 202          
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A1Y1M4P7_PHOPY (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1M4P7_PHOPY)

HSP 1 Score: 88.2 bits (217), Expect = 6.650e-20
Identity = 42/129 (32.56%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    1 RVQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKI-SAPESADKPYEPKGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYLS 384
            +++  +  +F ++ +G LS  LG+++ R+   G ITI+Q   + ++L +Y + +C  + TP+E K+ + S  ES DKPY  + +LGSL++A  G+RPD+ +A+   +R    P    + + +R+ RY+S
Sbjct:    4 KIKIELMNKFEMQDIGELSLFLGMKIHRNFEKGEITINQEQYLDKILLKYNMQDCNPIETPMEVKLNLQSEDESCDKPY--RELLGSLLFAMLGSRPDLNFALSYLSRSQNQPTETAWKSLKRVLRYIS 130          
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3)

HSP 1 Score: 94.0 bits (232), Expect = 8.400e-20
Identity = 47/135 (34.81%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   16 MNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPYEPK------------GMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYLS 384
            + + F +  LG    ++G+EV+RD     I++ Q S +  +LK+YG++ CR V+TP++  V ++     D   EP+              +GSLMYA+ GTRPDIAYAVQ+ ++   +P    ++  +R+FRYL+
Sbjct:  943 LKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKKYGMENCRPVSTPMDPNVVLTRVNENDVKDEPREDRDERLGGRYAAAVGSLMYAAIGTRPDIAYAVQKLSKYSSNPGNSHWTALKRVFRYLA 1077          
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: H3G6C9_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G6C9_PHYRM)

HSP 1 Score: 90.9 bits (224), Expect = 1.170e-19
Identity = 49/128 (38.28%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 RVQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPYEP-KGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
            R + ++  RF +   G  + +LGIE+  D P+G +T+ Q   + ++LKR+ +DEC+ V +PV+   ++   ++A K   P +  +G+LMY  T TRPDIAYAV   +R M++P  E +   +RIFRYL
Sbjct:   58 RTKTDLKTRFEMTDSGKCAFVLGIELV-DGPDGSVTMCQRRYVDDILKRFAMDECKAVVSPVDMSTRLVPSDAATKVNAPFREAVGALMYLMTATRPDIAYAVGYVSRFMENPQEEHWVAVKRIFRYL 184          
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: H3H7G8_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7G8_PHYRM)

HSP 1 Score: 89.0 bits (219), Expect = 1.850e-19
Identity = 48/128 (37.50%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 RVQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPYEP-KGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
            R + ++  RF +   G  + +LGIE+  D P+G +T+ Q   + ++LKR+ +DEC+ V +PV+   ++   ++A K   P +  +G+LM+  T TRPDIAYAV   +R M++P  E +   +RIFRYL
Sbjct:   46 RTKTDLKTRFEMTDSGKCAFVLGIELV-DGPDGSVTMCQRRYVDDILKRFAMDECKAVVSPVDMSTRLVPSDAATKVNAPFREAVGALMHLMTATRPDIAYAVGYVSRFMENPQEEHWVAVKRIFRYL 172          
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A146HMH3_MYCCL (Polyprotein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HMH3_MYCCL)

HSP 1 Score: 92.4 bits (228), Expect = 2.930e-19
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   34 VKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESA----------DKPYEPKGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
            V  LG +  +LGIEV+RD     I +SQ + I  +L+RYG+DE + V+TP+E    +S+ +S           D PY     +GSLMY +  TRPDIAYAVQ  +R +K P    +   +RIFRYL
Sbjct: 1191 VSDLGEIHWILGIEVKRDRAARTIHLSQRAYIDSILRRYGLDELKPVSTPMETSANLSSSQSPSSTSDLALMRDVPYN--AAVGSLMYCAVATRPDIAYAVQSVSRFLKTPGPAHWDAVKRIFRYL 1314          
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A2G8RNC8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RNC8_9APHY)

HSP 1 Score: 92.0 bits (227), Expect = 4.000e-19
Identity = 48/136 (35.29%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 RVQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPYEPKGM--------LGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYLS 384
            RV+  + + F +   G +  +LG  V RD     +++SQ + I  +++R+G+D+ + ++TP++  V++SA +S     E  GM        +GSL YAS GTRPDI YAV   +R +++P R  +  C+R+FRYL+
Sbjct: 1178 RVKAKLREAFEISDEGEIHWILGFAVIRDRSARTLSLSQTAYIDAIIRRFGLDDAKPLSTPMDPHVQLSAEQSPKTMAEVAGMRNVPYREAVGSLQYASLGTRPDITYAVSVLSRFLENPGRAHWEACKRVFRYLA 1313          
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A2W0BH45_9BACT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2W0BH45_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 6.750e-19
Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = 1
Query:    4 VQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPY--------EPKGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
            ++  + +R+++  LG  S+ LG+E+ RD  +  + + Q + I  VLKR+ +D+C GV+TP+E   ++ A   AD+ Y        E +  LGS+MYA  GTRPD+AY +   ++   +P  E  +   RIFRYL
Sbjct:   63 IKSQLMKRYKMTDLGPASQFLGLEISRDRESRTLHLHQSTYIKHVLKRFQMDQCNGVSTPMEPNARLHA---ADEGYIALENDILEYQQALGSIMYAMLGTRPDLAYPISSLSKFSINPSFEHAAAIHRIFRYL 193          
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: H3H5N2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5N2_PHYRM)

HSP 1 Score: 89.0 bits (219), Expect = 7.280e-19
Identity = 48/128 (37.50%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 RVQHNMNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVEGKVKISAPESADKPYEP-KGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
            R + ++  RF +   G  + +LGIE+  D P+G +T+ Q   + ++LKR+ +DEC+ V +PV+   ++   ++A K   P +  +G+LM+  T TRPDIAYAV   +R M++P  E +   +RIFRYL
Sbjct:   77 RTKTDLKTRFEMTDSGKCAFVLGIELV-DGPDGSVTMCQRRYVDDILKRFAMDECKAVVSPVDMSTRLVPSDAATKVNAPFREAVGALMHLMTATRPDIAYAVGYVSRFMENPQEEHWVAVKRIFRYL 203          
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 90.9 bits (224), Expect = 1.010e-18
Identity = 51/128 (39.84%), Postives = 76/128 (59.38%), Query Frame = 1
Query:   16 MNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDECRGVTTPVE-GKVKISAPESADK-----PYEPKGMLGSLMYASTGTRPDIAYAVQQAARRMKDPCREDFSTCRRIFRYL 381
            + ++  +K LG    +LG+EV+RD   G I+ISQ   IGEVLKRYG++ C+ V+TP+E G  +  +    ++     PY+   ++GSLMY   GTRPDIA+AV   +   K      +S  +R+ RYL
Sbjct: 1047 LGEKIELKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVSTPIEPGLTQEESTSQREEQLQGIPYQ--SLIGSLMYLVQGTRPDIAFAVNYLSEFNKSFTSRHWSMAKRVLRYL 1172          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46647.11624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7M5XDS1_9CNID1.730e-2137.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1M4P7_PHOPY6.650e-2032.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A067T5Q4_GALM38.400e-2034.81Integrase catalytic domain-containing protein (Fra... [more]
H3G6C9_PHYRM1.170e-1938.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H7G8_PHYRM1.850e-1937.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A146HMH3_MYCCL2.930e-1942.06Polyprotein (Fragment) n=1 Tax=Mycena chlorophos T... [more]
A0A2G8RNC8_9APHY4.000e-1935.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A2W0BH45_9BACT6.750e-1935.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H5N2_PHYRM7.280e-1937.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A293MM55_ORNER1.010e-1839.84Reverse transcriptase, gag, polyprotein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46647contigH-paniculata_contig46647:772..1239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.9e-15
Seed eggNOG ortholog164328.Phyra71113
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3Q8Z1@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size384
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46647.11624.1prot_H-paniculata_contig46647.11624.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46647 787..1239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.5466535-UTR-H-paniculata_contig46647:771..7861622930390.5466535-UTR-H-paniculata_contig46647:771..786Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46647 772..786 +
1691481270.0997603-UTR-H-paniculata_contig46647:771..7861691481270.0997603-UTR-H-paniculata_contig46647:771..786Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46647 772..786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930390.5802011-CDS-H-paniculata_contig46647:786..10131622930390.5802011-CDS-H-paniculata_contig46647:786..1013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46647 787..1013 +
1691481270.1106699-CDS-H-paniculata_contig46647:786..10131691481270.1106699-CDS-H-paniculata_contig46647:786..1013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46647 787..1013 +
1622930390.5976124-CDS-H-paniculata_contig46647:1097..12391622930390.5976124-CDS-H-paniculata_contig46647:1097..1239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46647 1098..1239 +
1691481270.1221724-CDS-H-paniculata_contig46647:1097..12391691481270.1221724-CDS-H-paniculata_contig46647:1097..1239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46647 1098..1239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46647.11624.1

>prot_H-paniculata_contig46647.11624.1 ID=prot_H-paniculata_contig46647.11624.1|Name=mRNA_H-paniculata_contig46647.11624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MNQRFRVKALGSLSRMLGIEVRRDHPNGIITISQGSNIGEVLKRYGVDEC
RGVTTPVEGKVKISAPESADKPYEPKGMLGSLMYASTGTRPDIAYAVQQA
ARRMKDPCREDFSTCRRIFRYLS
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mRNA from alignment at H-paniculata_contig46647:772..1239+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46647.11624.1 ID=mRNA_H-paniculata_contig46647.11624.1|Name=mRNA_H-paniculata_contig46647.11624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at H-paniculata_contig46647:772..1239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGTTCAACATAACATGAATCAGCGTTTTAGGGTGAAAGCCTTGGGCTC TCTCTCGCGCATGTTGGGAATAGAAGTACGACGTGACCACCCTAATGGTA TCATAACCATCTCGCAGGGTAGCAATATCGGCGAGGTACTAAAAAGATAC GGTGTTGACGAGTGTCGAGGGGTAACCACCCCTGTAGAGGGAAAAGTGAA GATTTCGGCACCCGAGTCGGCCGACAAGCCCTACGAACCGAAGTCACTTG GAGCTGTACTGTCGGACATGGGCGCAGGAATACAAGAGAGCAGCTGCGGG AGAAGTGATAATTCAACTGAATACAGAGGCATGTTAGGATCACTCATGTA CGCCTCGACAGGAACTAGACCTGATATAGCATACGCGGTACAACAAGCAG CACGTCGTATGAAGGACCCATGTCGAGAAGACTTCAGTACATGCAGGCGC ATTTTTCGTTATCTCAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig46647:772..1239+

>mRNA_H-paniculata_contig46647.11624.1 ID=mRNA_H-paniculata_contig46647.11624.1|Name=mRNA_H-paniculata_contig46647.11624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig46647:772..1239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCAGCGTTTTAGGGTGAAAGCCTTGGGCTCTCTCTCGCGCATGTT
GGGAATAGAAGTACGACGTGACCACCCTAATGGTATCATAACCATCTCGC
AGGGTAGCAATATCGGCGAGGTACTAAAAAGATACGGTGTTGACGAGTGT
CGAGGGGTAACCACCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCGA
GTCGGCCGACAAGCCCTACGAACCGAAATGAATCAGCGTTTTAGGGTGAA
AGCCTTGGGCTCTCTCTCGCGCATGTTGGGAATAGAAGTACGACGTGACC
ACCCTAATGGTATCATAACCATCTCGCAGGGTAGCAATATCGGCGAGGTA
CTAAAAAGATACGGTGTTGACGAGTGTCGAGGGGTAACCACCCCTGTAGA
GGGAAAAGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCCTACGAAC
CGAAAGGCATGTTAGGATCACTCATGTACGCCTCGACAGGAACTAGACCT
GATATAGCATACGCGGTACAACAAGCAGCACGTCGTATGAAGGACCCATG
TCGAGAAGACTTCAGTACATGCAGGCGCATTTTTCGTTATCTCAGTAGGC
ATGTTAGGATCACTCATGTACGCCTCGACAGGAACTAGACCTGATATAGC
ATACGCGGTACAACAAGCAGCACGTCGTATGAAGGACCCATGTCGAGAAG
ACTTCAGTACATGCAGGCGCATTTTTCGTTATCTCAGT
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