mRNA_H-paniculata_contig45628.11440.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 172 bits (435), Expect = 5.460e-45 Identity = 104/258 (40.31%), Postives = 146/258 (56.59%), Query Frame = 3
Query: 165 FL*NQCPVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPS-VRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKV-----KISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVEDPCRE 917
+L PVA M T+R V +LA D EL M VD AY+ + +EE++++K PP + + + V RL KSLYGLKQSGRNW+ + + G GL S D LY GE L++ +YV+DL+I R D+FK +IS F KDL L +LG+ ++R+R N T+ ISQ YI +L ++G C+ V TP+EG + K PD EY +VGSL YA+ TRPDIA+AV + ++ +E
Sbjct: 274 YLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDN-------EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKE 523
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 167 bits (424), Expect = 6.290e-45 Identity = 102/253 (40.32%), Postives = 143/253 (56.52%), Query Frame = 3
Query: 165 FL*NQCPVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPF-SRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKV-----KISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVE 902
+L PVA + T+R V +LA D EL M V+ AY+ + +EE+++VK PP + + S V RL KSLYGLKQSGRNW+ + + G G S+ D LY GE L++ +YV+DL+I RE V +FKH IS F KDL L +LG+ ++RDR + ISQ +YI +L ++ C+ V TP+EG + K PD EY +VGSL YA+ TRPDIA+AV + ++
Sbjct: 54 YLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDN-------EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQ 298
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 162 bits (410), Expect = 2.690e-44 Identity = 100/247 (40.49%), Postives = 144/247 (58.30%), Query Frame = 3
Query: 165 FL*NQCPVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFS---PFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKV-KISA----PDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAV 878
+L PVA + T+R + ++A D EL M VD AY+ + +EE+++VK PP + P ++ V RL KSLYGLKQSGRNW+ + + G G S+ D LY GE L++ +YV+DL+I G R+ VD+FK IS KDL L +LG+ ++R+R + ISQ +YI +L ++ C+ V TP+EG + K++ PDR EY +VGSL YA+ TRPDIA+AV
Sbjct: 54 YLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEGILTKMNGEGDKPDR-------EYMKLVGSLLYAALVTRPDIAFAV 290
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA) HSP 1 Score: 167 bits (423), Expect = 6.500e-43 Identity = 100/253 (39.53%), Postives = 144/253 (56.92%), Query Frame = 3
Query: 165 FL*NQCPVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPF-SRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKV-----KISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVE 902
+L PVA + T+R + ++A D EL M V+ AY+ + +EE+++VK P + + S V RL KSLYGLKQSGRNW+ + + G G S+ D LY GE L++ +YV+DL+I RE V++FKH IS F KDL L +LG+ ++RDR + ISQ +YI +L ++G C+ V TP+EG + K PD EY +VGSL YA+ TRPDIA+AV + ++
Sbjct: 494 YLYTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADCKPVLTPMEGTLTKMDGKDVKPDN-------EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQ 738
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA) HSP 1 Score: 167 bits (423), Expect = 7.670e-43 Identity = 94/248 (37.90%), Postives = 151/248 (60.89%), Query Frame = 3
Query: 183 PVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPS-VRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGRRE-KVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVE-GKVKISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVEDPCRE 917
PV R T+R +F++AAE + + + AY+N+ ++EE++++ P F S + P+ V +L K++YGLKQSGR WNNTL + L +G +RS ++ LY + G + +AVYV+DL+I+ E ++ K IS +F D GSLS LG+E++RD G +++ Q +YIR +LK YG + CR V TP++ G + D N T+Y+ ++GSL Y + +RPDI +AV + ++ +P E
Sbjct: 904 PVIRYETIRMLFAIAAEKQLFMHQIDISNAYLNSSLDEEVYMRQPQNF--ISTEHPNKVLKLKKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQGSS--YIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLDPGFLVCCKDDSCVKVNVTQYQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTE 1147
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA) HSP 1 Score: 167 bits (422), Expect = 9.340e-43 Identity = 100/253 (39.53%), Postives = 144/253 (56.92%), Query Frame = 3
Query: 165 FL*NQCPVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPS-VRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKV-----KISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVE 902
+L PVA + T+R + ++A D EL M V+ AY+ + +EE+++VK P + + + V RL KSLYGLKQSGRNW+ + + G G S+ D LY GE L++ +YV+DL+I RE VD+FK IS F KDL L +LG+ ++R+R + ISQ +YI VL ++G CR V TP+EG + K + PD EY +VGSL YA+ TRPDIA+AV + ++
Sbjct: 283 YLHTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDAKPDN-------EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQ 527
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA) HSP 1 Score: 164 bits (415), Expect = 8.950e-42 Identity = 94/246 (38.21%), Postives = 140/246 (56.91%), Query Frame = 3
Query: 183 PVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGRR-EKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKVKISAPDRGRSGNSTE---YRGMVGSLTYASTGTRPDIAYAVHQAARSVEDP 908
PV + ++R + S D EL+ M V A+++ +++ELF++ P F +D V L KSLYGLKQS R WN + F+ G RS DS +Y + +GG LL+ YV+D++I + ++D K +S F KD+G+ SR+LGI+++RDR G + +SQ SY+ +V+KR+ + V TP+ G K+SA TE Y VGS+ YA GTRPDIAYA+ +R + P
Sbjct: 926 PVVKHVSIRILMSAVVNQDLELEQMDVKTAFLHGDLDQELFMEQPEGFE-VDKDKDQVCLLKKSLYGLKQSPRLWNKKFNQFITGEKFIRSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKYPYSSAVGSVMYAMIGTRPDIAYAIGLISRFMSKP 1168
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA) HSP 1 Score: 163 bits (413), Expect = 1.510e-41 Identity = 101/255 (39.61%), Postives = 143/255 (56.08%), Query Frame = 3
Query: 165 FL*NQCPVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLP---PEFSPFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKV-----KISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVE 902
+L PVA M T+R V +LA D EL M VD AY+ + +EE++++K P ++ P ++ V RL KSLYGLKQSGRNW+ + + G G S+ D LY GE L+V +YV+DL+I R D+FK IS F KDL L +LG+ ++R+R + ISQ YI +L ++G C+ V TP+EG + K PD +EY +VGSL YA+ TRPDIA+AV + ++
Sbjct: 572 YLQTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKMDGKDVKPD-------SEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQ 816
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK) HSP 1 Score: 154 bits (388), Expect = 1.600e-41 Identity = 84/245 (34.29%), Postives = 144/245 (58.78%), Query Frame = 3
Query: 183 PVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGRREK-VDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKVKISAPD--RGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVEDP 908
PV +LR + +++A + + + + A++N + ++++V+ PP + + V +L K+LYGLKQS R W LHD L +G +RS +S LY RD G E L+VAVYV+DLVI G + V EFK +++ ++ D G L+++LGI+V RD+ N +SQ S+I++ L ++G + TP++ V ++ + ++ YR MVG+L + + TRP++A+ VH+ R+ +P
Sbjct: 12 PVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVD-PQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDGGNE--LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINP 253
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR) HSP 1 Score: 162 bits (411), Expect = 3.080e-41 Identity = 91/243 (37.45%), Postives = 139/243 (57.20%), Query Frame = 3
Query: 183 PVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGRREK-VDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKVKISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVEDP 908
PVA++ T RT+F+LAA +E+ GM V AY+ + EE+++ P F V RL +SLYGLKQ+ R WN +H FL+ +G RS D LY + L + ++V+DL+IVG+ + + K ++ F KDLG L LG+ + R NG+I+I Q YIR++L+R+G E + V TP+ ++ + N +Y+ MVGSL YA +RPD+AYA+ Q ++ +P
Sbjct: 984 PVAKLTTYRTIFALAALEQWEIHGMDVITAYLLGKLNEEIYMMQPEGFVRMGMKRNMVCRLLRSLYGLKQAARVWNQKIHAFLIKLGFVRSNADPCLYIKKF------LYITIWVDDLLIVGKNGRDIANVKGQLAGEFEMKDLGKLEYFLGMRIMRSL-NGSISIDQNGYIRQILERFGMEASKPVSTPIATGTRLVIGET--ESNIKQYQAMVGSLMYAMLCSRPDLAYAIQQLSQFNSNP 1217 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig45628.11440.1 >prot_H-paniculata_contig45628.11440.1 ID=prot_H-paniculata_contig45628.11440.1|Name=mRNA_H-paniculata_contig45628.11440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp MWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDback to top mRNA from alignment at H-paniculata_contig45628:18..1012- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig45628.11440.1 ID=mRNA_H-paniculata_contig45628.11440.1|Name=mRNA_H-paniculata_contig45628.11440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=995bp|location=Sequence derived from alignment at H-paniculata_contig45628:18..1012- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig45628:18..1012- >mRNA_H-paniculata_contig45628.11440.1 ID=mRNA_H-paniculata_contig45628.11440.1|Name=mRNA_H-paniculata_contig45628.11440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig45628:18..1012- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |