prot_H-paniculata_contig45628.11440.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig45628.11440.1
Unique Nameprot_H-paniculata_contig45628.11440.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length132
Homology
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.500e-22
Identity = 56/133 (42.11%), Postives = 80/133 (60.15%), Query Frame = 0
Query:    3 TLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFS---PFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS 131
            T+R + ++A   D EL  M VD AY+ + +EE+++VK PP +    P   ++  V RL KSLYGLKQSGRNW+  +  +  G G   S+ D  LY      GE  L++ +YV+DL+I G  R+ VD+FK  IS
Sbjct:   66 TIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAIS 195          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.720e-21
Identity = 57/131 (43.51%), Postives = 78/131 (59.54%), Query Frame = 0
Query:    3 TLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPF-SRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS 131
            T+R V +LA   D EL  M V+ AY+ + +EE+++VK PP +  + S     V RL KSLYGLKQSGRNW+  +  +  G G   S+ D  LY      GE  L++ +YV+DL+I    RE V +FKH IS
Sbjct:   66 TIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAIS 195          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.980e-20
Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = 0
Query:    1 MWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPS-VRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS 131
            M T+R V +LA   D EL  M VD AY+ + +EE++++K PP +  +  +    V RL KSLYGLKQSGRNW+  +  +  G GL  S  D  LY      GE  L++ +YV+DL+I    R   D+FK +IS
Sbjct:  284 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDIS 415          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 9.520e-20
Identity = 54/131 (41.22%), Postives = 78/131 (59.54%), Query Frame = 0
Query:    3 TLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPF-SRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS 131
            T+R + ++A   D EL  M V+ AY+ + +EE+++VK P  +  + S     V RL KSLYGLKQSGRNW+  +  +  G G   S+ D  LY      GE  L++ +YV+DL+I    RE V++FKH IS
Sbjct:  506 TIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAIS 635          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7TWT0_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWT0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.620e-19
Identity = 52/135 (38.52%), Postives = 82/135 (60.74%), Query Frame = 0
Query:    1 MWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLP---PEFSPFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS 131
            M T+R + +LA   D EL  M V+ AY+ + +EE++++K P    ++ P   ++  V RL KSLYGLKQSGRNW+  +  +  G G   S+ D  LY      GE  L++ +YV+DL+I G+ R+ +++FK  +S
Sbjct:  255 MTTIRLILALACILDSELDNMDVETAYLQSDLEEKVYIKQPIGYEQYGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEI-LVIVLYVDDLIITGKSRDMINDFKLAVS 386          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 92.0 bits (227), Expect = 4.260e-19
Identity = 47/131 (35.88%), Postives = 80/131 (61.07%), Query Frame = 0
Query:    3 TLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRD-IPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGRR-EKVDEFKHNIS 131
            ++R +  LAA+++  +  M V  A+++ P++ E+F++ P  F   S + +  V RL KSLYGLKQSGRNWN  L ++L+  G  R+  D  +Y  +   GE  ++V ++V+DL+I     +K+ +FK N+ 
Sbjct:  261 SIRILMQLAAQYNLTVHQMDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMK 389          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.150e-19
Identity = 53/131 (40.46%), Postives = 77/131 (58.78%), Query Frame = 0
Query:    3 TLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPS-VRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS 131
            T+R + ++A   D EL  M V+ AY+ + +EE+++VK P  +  +  +    V RL KSLYGLKQSGRNW+  +  +  G G   S+ D  LY      GE  L++ +YV+DL+I    RE VD+FK  IS
Sbjct:  295 TIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAIS 424          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.160e-19
Identity = 56/135 (41.48%), Postives = 78/135 (57.78%), Query Frame = 0
Query:    1 MWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLP---PEFSPFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS 131
            M T+R V +LA   D EL  M VD AY+ + +EE++++K P    ++ P   ++  V RL KSLYGLKQSGRNW+  +  +  G G   S+ D  LY      GE  L+V +YV+DL+I    R   D+FK  IS
Sbjct:  582 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLIIASNSRTMADKFKQAIS 713          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 91.3 bits (225), Expect = 6.500e-19
Identity = 47/131 (35.88%), Postives = 79/131 (60.31%), Query Frame = 0
Query:    3 TLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRD-IPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGRR-EKVDEFKHNIS 131
            ++  +  LAA++D  +  M V  A+++ P++ E+F++ P  F   S + +  V RL KSLYGLKQSGRNWN  L ++L+  G  R+  D  +Y  +   GE  ++V ++V+DL+I     +K+ +FK N+ 
Sbjct:  236 SITILMQLAAQYDLTVHQMDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMK 364          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7T9Y7_9STRA (Retrotransposon ty1-copia subclass n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9Y7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.880e-19
Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 0
Query:    3 TLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPP---EFSPFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVG 118
            T+R + ++A   D EL  M VD AY+ + +EE+++VK PP   ++ P   ++  V  L KSLYGLKQSG NW+  +  +  G G   S+TD  LY      GE  L++ +YV+DL+I G
Sbjct:   50 TIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEEL--VCLLHKSLYGLKQSGINWHKKIDGWFRGYGFHSSSTDPCLYVKFGSSGEI-LVIVLYVDDLIIAG 165          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TII5_9STRA4.500e-2242.11Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA2.720e-2143.51Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7TJ26_9STRA4.980e-2042.11Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7T0T3_9STRA9.520e-2041.22Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TWT0_9STRA1.620e-1938.52Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A6S7HLY2_PARCT4.260e-1935.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TIM1_9STRA6.150e-1940.46Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T174_9STRA6.160e-1941.48Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A7D9HG25_PARCT6.500e-1935.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7T9Y7_9STRA7.880e-1940.34Retrotransposon ty1-copia subclass n=1 Tax=Nannoch... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 5..129
e-value: 8.7E-26
score: 91.0
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 1..98
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45628contigH-paniculata_contig45628:423..818 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45628.11440.1mRNA_H-paniculata_contig45628.11440.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig45628 18..1012 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig45628.11440.1 ID=prot_H-paniculata_contig45628.11440.1|Name=mRNA_H-paniculata_contig45628.11440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRD
IPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDG
GETNLLVAVYVNDLVIVGRREKVDEFKHNIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like