mRNA_H-paniculata_contig45628.11440.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45628.11440.1
Unique NamemRNA_H-paniculata_contig45628.11440.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 172 bits (435), Expect = 5.460e-45
Identity = 104/258 (40.31%), Postives = 146/258 (56.59%), Query Frame = 3
Query:  165 FL*NQCPVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPS-VRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKV-----KISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVEDPCRE 917
            +L    PVA M T+R V +LA   D EL  M VD AY+ + +EE++++K PP +  +  +    V RL KSLYGLKQSGRNW+  +  +  G GL  S  D  LY      GE  L++ +YV+DL+I    R   D+FK +IS  F  KDL  L  +LG+ ++R+R N T+ ISQ  YI  +L ++G   C+ V TP+EG +     K   PD        EY  +VGSL YA+  TRPDIA+AV    + ++   +E
Sbjct:  274 YLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDN-------EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKE 523          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 6.290e-45
Identity = 102/253 (40.32%), Postives = 143/253 (56.52%), Query Frame = 3
Query:  165 FL*NQCPVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPF-SRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKV-----KISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVE 902
            +L    PVA + T+R V +LA   D EL  M V+ AY+ + +EE+++VK PP +  + S     V RL KSLYGLKQSGRNW+  +  +  G G   S+ D  LY      GE  L++ +YV+DL+I    RE V +FKH IS  F  KDL  L  +LG+ ++RDR    + ISQ +YI  +L ++    C+ V TP+EG +     K   PD        EY  +VGSL YA+  TRPDIA+AV    + ++
Sbjct:   54 YLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDN-------EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQ 298          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.690e-44
Identity = 100/247 (40.49%), Postives = 144/247 (58.30%), Query Frame = 3
Query:  165 FL*NQCPVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFS---PFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKV-KISA----PDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAV 878
            +L    PVA + T+R + ++A   D EL  M VD AY+ + +EE+++VK PP +    P   ++  V RL KSLYGLKQSGRNW+  +  +  G G   S+ D  LY      GE  L++ +YV+DL+I G  R+ VD+FK  IS     KDL  L  +LG+ ++R+R    + ISQ +YI  +L ++    C+ V TP+EG + K++     PDR       EY  +VGSL YA+  TRPDIA+AV
Sbjct:   54 YLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEGILTKMNGEGDKPDR-------EYMKLVGSLLYAALVTRPDIAFAV 290          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 167 bits (423), Expect = 6.500e-43
Identity = 100/253 (39.53%), Postives = 144/253 (56.92%), Query Frame = 3
Query:  165 FL*NQCPVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPF-SRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKV-----KISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVE 902
            +L    PVA + T+R + ++A   D EL  M V+ AY+ + +EE+++VK P  +  + S     V RL KSLYGLKQSGRNW+  +  +  G G   S+ D  LY      GE  L++ +YV+DL+I    RE V++FKH IS  F  KDL  L  +LG+ ++RDR    + ISQ +YI  +L ++G   C+ V TP+EG +     K   PD        EY  +VGSL YA+  TRPDIA+AV    + ++
Sbjct:  494 YLYTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADCKPVLTPMEGTLTKMDGKDVKPDN-------EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQ 738          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 167 bits (423), Expect = 7.670e-43
Identity = 94/248 (37.90%), Postives = 151/248 (60.89%), Query Frame = 3
Query:  183 PVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPS-VRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGRRE-KVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVE-GKVKISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVEDPCRE 917
            PV R  T+R +F++AAE    +  + +  AY+N+ ++EE++++ P  F   S + P+ V +L K++YGLKQSGR WNNTL + L  +G +RS  ++ LY  +   G +   +AVYV+DL+I+   E ++   K  IS +F   D GSLS  LG+E++RD   G +++ Q +YIR +LK YG + CR V TP++ G +     D     N T+Y+ ++GSL Y +  +RPDI +AV + ++   +P  E
Sbjct:  904 PVIRYETIRMLFAIAAEKQLFMHQIDISNAYLNSSLDEEVYMRQPQNF--ISTEHPNKVLKLKKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQGSS--YIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLDPGFLVCCKDDSCVKVNVTQYQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTE 1147          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 167 bits (422), Expect = 9.340e-43
Identity = 100/253 (39.53%), Postives = 144/253 (56.92%), Query Frame = 3
Query:  165 FL*NQCPVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPS-VRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKV-----KISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVE 902
            +L    PVA + T+R + ++A   D EL  M V+ AY+ + +EE+++VK P  +  +  +    V RL KSLYGLKQSGRNW+  +  +  G G   S+ D  LY      GE  L++ +YV+DL+I    RE VD+FK  IS  F  KDL  L  +LG+ ++R+R    + ISQ +YI  VL ++G   CR V TP+EG +     K + PD        EY  +VGSL YA+  TRPDIA+AV    + ++
Sbjct:  283 YLHTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDAKPDN-------EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQ 527          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 164 bits (415), Expect = 8.950e-42
Identity = 94/246 (38.21%), Postives = 140/246 (56.91%), Query Frame = 3
Query:  183 PVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGRR-EKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKVKISAPDRGRSGNSTE---YRGMVGSLTYASTGTRPDIAYAVHQAARSVEDP 908
            PV +  ++R + S     D EL+ M V  A+++  +++ELF++ P  F    +D   V  L KSLYGLKQS R WN   + F+ G    RS  DS +Y  + +GG   LL+  YV+D++I  +   ++D  K  +S  F  KD+G+ SR+LGI+++RDR  G + +SQ SY+ +V+KR+     + V TP+ G  K+SA         TE   Y   VGS+ YA  GTRPDIAYA+   +R +  P
Sbjct:  926 PVVKHVSIRILMSAVVNQDLELEQMDVKTAFLHGDLDQELFMEQPEGFE-VDKDKDQVCLLKKSLYGLKQSPRLWNKKFNQFITGEKFIRSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKYPYSSAVGSVMYAMIGTRPDIAYAIGLISRFMSKP 1168          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.510e-41
Identity = 101/255 (39.61%), Postives = 143/255 (56.08%), Query Frame = 3
Query:  165 FL*NQCPVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLP---PEFSPFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGR-REKVDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKV-----KISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVE 902
            +L    PVA M T+R V +LA   D EL  M VD AY+ + +EE++++K P    ++ P   ++  V RL KSLYGLKQSGRNW+  +  +  G G   S+ D  LY      GE  L+V +YV+DL+I    R   D+FK  IS  F  KDL  L  +LG+ ++R+R    + ISQ  YI  +L ++G   C+ V TP+EG +     K   PD       +EY  +VGSL YA+  TRPDIA+AV    + ++
Sbjct:  572 YLQTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKMDGKDVKPD-------SEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQ 816          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 154 bits (388), Expect = 1.600e-41
Identity = 84/245 (34.29%), Postives = 144/245 (58.78%), Query Frame = 3
Query:  183 PVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGRREK-VDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKVKISAPD--RGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVEDP 908
            PV    +LR + +++A   + +  + +  A++N  + ++++V+ PP +    +    V +L K+LYGLKQS R W   LHD L  +G +RS  +S LY  RD G E  L+VAVYV+DLVI G  +  V EFK +++ ++   D G L+++LGI+V RD+ N    +SQ S+I++ L ++G +      TP++  V ++     +    ++  YR MVG+L + +  TRP++A+ VH+  R+  +P
Sbjct:   12 PVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVD-PQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDGGNE--LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINP 253          
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR)

HSP 1 Score: 162 bits (411), Expect = 3.080e-41
Identity = 91/243 (37.45%), Postives = 139/243 (57.20%), Query Frame = 3
Query:  183 PVARMWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRDIPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDGGETNLLVAVYVNDLVIVGRREK-VDEFKHNIS*RFGRKDLGSLSRVLGIEVRRDRPNGTIAISQGSYIREVLKRYGFELCRGVPTPVEGKVKISAPDRGRSGNSTEYRGMVGSLTYASTGTRPDIAYAVHQAARSVEDP 908
            PVA++ T RT+F+LAA   +E+ GM V  AY+   + EE+++  P  F         V RL +SLYGLKQ+ R WN  +H FL+ +G  RS  D  LY  +       L + ++V+DL+IVG+  + +   K  ++  F  KDLG L   LG+ + R   NG+I+I Q  YIR++L+R+G E  + V TP+    ++   +     N  +Y+ MVGSL YA   +RPD+AYA+ Q ++   +P
Sbjct:  984 PVAKLTTYRTIFALAALEQWEIHGMDVITAYLLGKLNEEIYMMQPEGFVRMGMKRNMVCRLLRSLYGLKQAARVWNQKIHAFLIKLGFVRSNADPCLYIKKF------LYITIWVDDLLIVGKNGRDIANVKGQLAGEFEMKDLGKLEYFLGMRIMRSL-NGSISIDQNGYIRQILERFGMEASKPVSTPIATGTRLVIGET--ESNIKQYQAMVGSLMYAMLCSRPDLAYAIQQLSQFNSNP 1217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45628.11440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TJ26_9STRA5.460e-4540.31Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA6.290e-4540.32Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7TII5_9STRA2.690e-4440.49Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T0T3_9STRA6.500e-4339.53Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W8BWJ0_CERCA7.670e-4337.90Retrovirus-related Pol polyprotein from transposon... [more]
W7TIM1_9STRA9.340e-4339.53Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A1J3F7G4_NOCCA8.950e-4238.21Retrovirus-related Pol polyprotein from transposon... [more]
W7T174_9STRA1.510e-4139.61Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A7S3Y6S2_HETAK1.600e-4134.29Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A535F6U2_9CHLR3.080e-4137.45DDE-type integrase/transposase/recombinase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45628contigH-paniculata_contig45628:18..1012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.5
Seed ortholog evalue6.3e-16
Seed eggNOG ortholog15368.BRADI2G31610.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size917
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45628.11440.1prot_H-paniculata_contig45628.11440.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45628 423..818 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930366.0785277-UTR-H-paniculata_contig45628:17..1531622930366.0785277-UTR-H-paniculata_contig45628:17..153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45628 18..153 -
1691481259.5429637-UTR-H-paniculata_contig45628:17..1531691481259.5429637-UTR-H-paniculata_contig45628:17..153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45628 18..153 -
1622930366.0943756-UTR-H-paniculata_contig45628:231..4221622930366.0943756-UTR-H-paniculata_contig45628:231..422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45628 232..422 -
1691481259.5537984-UTR-H-paniculata_contig45628:231..4221691481259.5537984-UTR-H-paniculata_contig45628:231..422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45628 232..422 -
1622930366.1237664-UTR-H-paniculata_contig45628:818..10121622930366.1237664-UTR-H-paniculata_contig45628:818..1012Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45628 819..1012 -
1691481259.572698-UTR-H-paniculata_contig45628:818..10121691481259.572698-UTR-H-paniculata_contig45628:818..1012Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45628 819..1012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930366.112016-CDS-H-paniculata_contig45628:422..8181622930366.112016-CDS-H-paniculata_contig45628:422..818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45628 423..818 -
1691481259.5632555-CDS-H-paniculata_contig45628:422..8181691481259.5632555-CDS-H-paniculata_contig45628:422..818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45628 423..818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45628.11440.1

>prot_H-paniculata_contig45628.11440.1 ID=prot_H-paniculata_contig45628.11440.1|Name=mRNA_H-paniculata_contig45628.11440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MWTLRTVFSLAAEHDFELQGMGVDAAYVNTPVEEELFVKLPPEFSPFSRD
IPSVRRLCKSLYGLKQSGRNWNNTLHDFLVGIGLQRSTTDSRLYFSRDDG
GETNLLVAVYVNDLVIVGRREKVDEFKHNIS*
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mRNA from alignment at H-paniculata_contig45628:18..1012-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45628.11440.1 ID=mRNA_H-paniculata_contig45628.11440.1|Name=mRNA_H-paniculata_contig45628.11440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=995bp|location=Sequence derived from alignment at H-paniculata_contig45628:18..1012- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGCTGCAATGGAGGAAGAATGGGGAGCGTTGGTGTACAATGGGACATG GGAGGCGATTCGTACGAAGTGGATTTTTAAACGGAAACTGAAGGAGGACG GCAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTCAAGGTGTTTCCCAG GTGGAGGGTGAAGATTTCTTTGAAACCAGTGCCCCGTAGCTCGCATGTGG ACGTTACGTACTGTTTTTAGCCTGGCCGCCGAACATGATTTCGAACTACA AGGTATGGGCGTAGATGCGGCGTATGTGAACACCCCGGTAGAAGAAGAGC TGTTTGTTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCCGAGACATACCC TCTGTGCGCCGCCTGTGTAAAAGCCTGTACGGTCTCAAGCAGAGCGGCCG AAACTGGAATAACACTCTTCACGATTTTCTTGTTGGGATAGGACTCCAAC GTTCCACTACCGACTCTCGCTTGTACTTTTCCCGCGATGATGGGGGAGAA ACAAACCTTCTGGTGGCCGTCTATGTTAACGACCTGGTCATTGTTGGCCG TCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTTAGCGTTTTGGGA GGAAAGACTTGGGCTCTCTCTCGCGCGTGTTGGGAATAGAAGTACGACGT GACCGCCCTAATGGTACCATAGCCATCTCGCAGGGTAGCTACATCCGCGA GGTACTGAAAAGATACGGTTTTGAACTGTGTCGAGGAGTACCCACCCCTG TAGAGGGAAAAGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCCTCC GAACAGAAGTCACTTGGAGCTGTGCTGTCGGACATAGGCGCAGGAGTACA AGAAAGCAGCAGAGGGAGAAGTGGCAATTCAACTGAATACAGAGGCATGG TAGGGTCACTCACGTACGCCTCGACAGGAACTAGACCTGATATAGCATAC GCGGTACACCAAGCAGCACGTAGTGTGGAGGACCCATGTCGGGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig45628:18..1012-

>mRNA_H-paniculata_contig45628.11440.1 ID=mRNA_H-paniculata_contig45628.11440.1|Name=mRNA_H-paniculata_contig45628.11440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig45628:18..1012- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGACGTTACGTACTGTTTTTAGCCTGGCCGCCGAACATGATTTCGA
ACTACAAGGTATGGGCGTAGATGCGGCGTATGTGAACACCCCGGTAGAAG
AAGAGCTGTTTGTTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCCGAGAC
ATACCCTCTGTGCGCCGCCTGTGTAAAAGCCTGTACGGTCTCAAGCAGAG
CGGCCGAAACTGGAATAACACTCTTCACGATTTTCTTGTTGGGATAGGAC
TCCAACGTTCCACTACCGACTCTCGCTTGTACTTTTCCCGCGATGATGGG
GGAGAAACAAACCTTCTGGTGGCCGTCTATGTTAACGACCTGGTCATTGT
TGGCCGTCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTTAGATGT
GGACGTTACGTACTGTTTTTAGCCTGGCCGCCGAACATGATTTCGAACTA
CAAGGTATGGGCGTAGATGCGGCGTATGTGAACACCCCGGTAGAAGAAGA
GCTGTTTGTTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCCGAGACATAC
CCTCTGTGCGCCGCCTGTGTAAAAGCCTGTACGGTCTCAAGCAGAGCGGC
CGAAACTGGAATAACACTCTTCACGATTTTCTTGTTGGGATAGGACTCCA
ACGTTCCACTACCGACTCTCGCTTGTACTTTTCCCGCGATGATGGGGGAG
AAACAAACCTTCTGGTGGCCGTCTATGTTAACGACCTGGTCATTGTTGGC
CGTCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTTAG
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