mRNA_H-paniculata_contig1178.1137.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1178.1137.1
Unique NamemRNA_H-paniculata_contig1178.1137.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1178.1137.1 vs. uniprot
Match: A0A438CLT8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CLT8_VITVI)

HSP 1 Score: 197 bits (500), Expect = 8.690e-53
Identity = 134/346 (38.73%), Postives = 193/346 (55.78%), Query Frame = 1
Query:    1 GRKAIRTKWFFKWKLKEDGSVARYKA*LVAQGFCQVEGEDFFQTSARVARMSTLRTVFSLTAEHDFELEGMDVDAAYLNAPGRRRAICSATPRVFPFSRDMPFVRRLRNSLYGLKQSSRNWNNALDDFLVGIGIDRSTTDSCLYFSRDDDGETGLLVAVYVDDLVIAGRR-EKVDEFKHNTTQRFRMKELGSLLRLLGIEVRRDRLNRRSGYKPSKPKSLGDVLS--DISAGVQESSRGGSGNSTEYRSMIGPLILQYMQAHFFRYLSTAPDVGITFGGKSNGHGLEGFVDTNWAEDVGGRKSTTVYVLKLNSGAISWCSRKQQLVTWSSTEAEYVAAGEAGKEMI 1029
            G+KA+  KW +K K + DGS  RYKA LV +GF Q E  D+ +  + V +MST+R V  + A  +  LE +DV  A+L+       +    P  F        V +LR SLYGLKQ+ R W    D+F+  IG  R   D C YF   D+    +++ +YVDD++IAG   EK++  K   +++F MK+LG+  ++LG+ + RD++N     K S+ + +  VLS  DI+  V   SR  S    ++   I  ++         RYL  + D  + F G S    L+G+VD ++A D+  RKSTT +V  L   AISW S  Q++VT S+TEAEYVAA EAGKEMI
Sbjct:  577 GKKALHNKWVYKIKNEHDGSK-RYKARLVVKGFQQKESIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGD-LEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYFKSFDNSY--IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKVN--GTLKLSQSEYVKKVLSRPDIAHAVGVVSRFMSRPGKQHWEAIKWIL---------RYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMI 905          
BLAST of mRNA_H-paniculata_contig1178.1137.1 vs. uniprot
Match: A0A075B0S6_ROZAC (Reverse transcriptase, RNA-dependent DNA polymerase domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0S6_ROZAC)

HSP 1 Score: 189 bits (481), Expect = 3.930e-52
Identity = 130/385 (33.77%), Postives = 191/385 (49.61%), Query Frame = 1
Query:    4 RKAIRTKWFFKWKLKEDGSVARYKA*LVAQGFCQVEGEDFFQTSARVARMSTLRTVFSLTAEHDFELEGMDVDAAYLNAPGRRRAICSATPRVFPFSRDMPFVRRLRNSLYGLKQSSRNWNNALDDFLVGIGIDRSTTDSCLYFSRDDDGETGL--LVAVYVDDLVIAGRREKVDEFKHNTTQRFRMKELGSLLRLLGIEVRRDRLNRRSGY----------KPSKPKSLGDVLSDISAGV----QESSRGGSGNSTEYRSMIGPL----------------ILQYMQA-----------HFFRYLSTAPDVGITFGGKSNGHGLEGFVDTNWAEDVGGRKSTTVYVLKLNSGAISWCSRKQQLVTWSSTEAEYVAAGEAGKEMI 1029
            RK ++ +W F+ K   DGSVARYKA LVA+G+ QV G+DF +T A VA+  +LRT+ S+ A  D+E+E MDV  A+L  P  +  +    P           V +L  +LYGL+QS R W   L  FL+ IG+  +  D CLY        TGL   +++YVDD++IA  ++   + K   + RF+  +LG +   LG++V+R+R+ RR             K +K ++   V + +   V    + ++     N   YRS+IG L                IL   Q            H  +YL+     G+  GG S    L G+ D +WA D+  R+ST+ Y   L    I+WCS+ Q  V  SS EAEYV+   A +E I
Sbjct:  155 RKIVKCRWVFRIKRHSDGSVARYKARLVAKGYSQVPGQDFSETYAPVAKYKSLRTMLSIAASRDYEIEQMDVVTAFL-IPSLKEEVYMEIPSGVAHDNKSGMVCKLNKALYGLRQSPRVWYEELHTFLISIGLTPTIADPCLY--------TGLNCYLSIYVDDIIIAAPKDIASDIKKKISSRFQSTDLGPIQHCLGLKVQRNRIERRLYLSQSRLAEHLLKETKMENSRFVKTPLDPNVILKRENATIKAQINDIPYRSIIGTLHHLAMCTRPDLANAVGILSRFQEGPSTVHLTALKHVLQYLNATKHYGLKLGGSSLT--LSGYADADWAGDLDSRRSTSGYCFFLGDACINWCSKLQASVALSSCEAEYVSLSLATQEAI 528          
BLAST of mRNA_H-paniculata_contig1178.1137.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 195 bits (496), Expect = 5.070e-52
Identity = 141/388 (36.34%), Postives = 204/388 (52.58%), Query Frame = 1
Query:    1 GRKAIRTKWFFKWKLKEDGSVARYKA*LVAQGFCQVEGEDFFQTSARVARMSTLRTVFSLTAEHDFELEGMDVDAAYLNAPGRRRAICSATPRVFPFSRDMPFVRRLRNSLYGLKQSSRNWNNALDDFLVGIGIDRSTTDSCLYFSRDDDGETGLLVAVYVDDLVIAGR-REKVDEFKHNTTQRFRMKELGSLLRLLGIEVRRDRL----------------------NRRSGYKPSKPKSLGDVLSD--ISAGVQESSRG-------GS--------GNSTEYRSMIGPLILQYMQA--HFFRYLSTAPDVGITF---GGKSNGHGLEGFVDTNWAEDVGGRKSTTVYVLKLNSGAISWCSRKQQLVTWSSTEAEYVAAGEAGKEMI 1029
            GRK +  KW FK K   DGS+ +YKA LVA+GF QVEG D+  T A V++ +++RTV +L A +D +++ MDV +A+LN         +  P    F  D   V RLR SLYGLKQ+SR W   +      +G +RS  D  + F + ++G   L++A+YVDD++IAG  R  +D FK   ++RF M +LGS   +LG+E+ RDR                       N R    P +P    + LS+  I     +S+ G       GS        G  +++ +  GP   Q+ +A    FRYL  + D+ +++      SNG    G+ D +WA DV  R+ST+     L+ GA+SW S+KQQ +  SSTEAEYVA   A KE +
Sbjct: 1029 GRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPG---FDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSI-FVKVENGVI-LIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERHGMANCRPVSTPMEPNLKLEKLSEATIDPKPYQSALGSLMYAMLGSRPDLAFAVGALSKHSATPGP---QHWKALMRVFRYLRGSSDLCLSYKPDSEHSNGATPLGYCDADWAGDVNDRRSTSGQAFFLHGGAVSWQSKKQQSIAQSSTEAEYVALASAAKEAL 1408          
BLAST of mRNA_H-paniculata_contig1178.1137.1 vs. uniprot
Match: A0A177T2I3_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177T2I3_9BASI)

HSP 1 Score: 193 bits (490), Expect = 3.120e-51
Identity = 138/387 (35.66%), Postives = 195/387 (50.39%), Query Frame = 1
Query:    1 GRKAIRTKWFFKWKLKEDGSVARYKA*LVAQGFCQVEGEDFFQTSARVARMSTLRTVFSLTAEHDFELEGMDVDAAYLNAPGRRRAICSATPRVFPFSRDMPFVRRLRNSLYGLKQSSRNWNNALDDFLVGIGIDRSTTDSCLYFSRDDDGETGLLVAVYVDDLVIAGRR-EKVDEFKHNTTQRFRMKELGSLLRLLGIEVRRDRLNR---------------RSGYKPSKPKSLGDVLSDISAGVQESSRGGSGNSTEYRSMIGPLIL-------------------------QYMQA--HFFRYLSTAPDVGITFGGKSNGHGLEGFVDTNWAEDVGGRKSTTVYVLKLNSGAISWCSRKQQLVTWSSTEAEYVAAGEAGKEMIS 1032
            G   +  KW FK K   DGSV++YKA  VA+G+ QVEG D+ +T A  ARM+T+R + ++ A  D EL   D D AYLN P   +      P     SR    V RL  +LYGLKQ+ R WN  L + L  +G  +S TD+ L+   D    + + + VYVDDL+IA  +   + E K    QRF+ K+LG    LLGIE+RRDR  +               R G    KP  L  + S IS   +      +  +T YR+++G L+                          ++M A  H  R +    D  +TF G S+G  +  +VD +WA D   RKST+ + + +   A++W S+KQ  V  S+TEAEY+AAG AG+E I+
Sbjct:  874 GANILTGKWVFKIKRNPDGSVSKYKARFVARGYAQVEGVDYDETHAPTARMATVRAICAIAACDDLELSQFDYDTAYLNGPLHAKVYMH--PPEGTESRPGK-VWRLIKALYGLKQAGREWNLVLVELLTDLGFKQSKTDASLFVRTDP---SFVAIIVYVDDLIIAAAKGTDMGELKRQLAQRFKGKDLGEAHHLLGIEIRRDREKKILTMSQGRYAREVLARFGMSNCKPAKL-PMQSKISLMPRREGEPAADKAT-YRAIVGSLMYLVMGTRGDLAFYVSLLGRFASDPSEEHMAAAKHLMRNIKLTADAKLTFDG-SDGLRITAYVDADWAGDRSDRKSTSGFAILMAGAAVTWGSKKQTAVALSTTEAEYIAAGVAGREAIA 1251          
BLAST of mRNA_H-paniculata_contig1178.1137.1 vs. uniprot
Match: A0A2N9F319_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F319_FAGSY)

HSP 1 Score: 192 bits (487), Expect = 8.630e-51
Identity = 123/359 (34.26%), Postives = 188/359 (52.37%), Query Frame = 1
Query:    1 GRKAIRTKWFFKWKLKEDGSVARYKA*LVAQGFCQVEGEDFFQTSARVARMSTLRTVFSLTAEHDFELEGMDVDAAYLNAPGRRRAICSATPRVFPFSRDMPFVRRLRNSLYGLKQSSRNWNNALDDFLVGIGIDRSTTDSCLYFSRDDDGETGLLVAVYVDDLVIAG-RREKVDEFKHNTTQRFRMKELGSLLRLLGIEVRRDRLNR---------------RSGYKPSKPKSLGDVLSDISAGVQESSRGGSGNSTEYRSMIGPLILQYMQAHFFRYLSTAPDVGITFGGKSNGHGLEGFVDTNWAEDVGGRKSTTVYVLKLNSGAISWCSRKQQLVTWSSTEAEYVAAGEAGKEMI 1029
            GRKAI  KW +K K   +  V RY+A LV +GF Q EG DF +  + V R++T+R V ++ A  D  LE +DV  A+L+       I    P  F        V +L  SLYGLKQ+ R W    D F++ +G +R ++D C+Y+ R  DG   +++ +YVDD+++AG  ++++ + K    + F MK+LG   ++LG+++ RDR NR               R   +  KP     + + +    + SS     N  E   M        + +  F  + T PD+    G  S+   + G+VD+++A D+   KST+ YV  L  GA+SW S+ Q +V  S+TEAEYVAA +A KE I
Sbjct:  836 GRKAIGNKWVYKIKRDGNDQVERYRARLVVKGFAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFDLYLEQLDVKTAFLHGE-LEEEIYMLQPEGFEEKGKENLVCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRFGDGNF-IILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKP-----IPTPLPINFKLSSSMSPSNEAERMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGSGSD-FTVRGYVDSDYAGDLDKSKSTSGYVFTLAGGAVSWVSKLQSIVATSTTEAEYVAATQASKEAI 1186          
BLAST of mRNA_H-paniculata_contig1178.1137.1 vs. uniprot
Match: A0A438GDP4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GDP4_VITVI)

HSP 1 Score: 191 bits (486), Expect = 9.330e-51
Identity = 136/367 (37.06%), Postives = 192/367 (52.32%), Query Frame = 1
Query:    1 GRKAIRTKWFFKWKLKEDGSVARYKA*LVAQGFCQVEGEDFFQTSARVARMSTLRTVFSLTAEHDFELEGMDVDAAYLNAPGRRRAICSATPRVFPFSRDMPFVRRLRNSLYGLKQSSRNWNNALDDFLVGIGIDRSTTDSCLYFSRDDDGETGLLVAVYVDDLVIAGRR-EKVDEFKHNTTQRFRMKELGSLLRLLGIEVRRDRLN---------------RRSGYKPSKPKS--LGD--VLSDISAGVQESSRGGSGNSTEYRSMIGPLILQYMQAHFFRYLSTAPD----VGITFGGKSNGHGLEGFVDTNWAEDVGGRKSTTVYVLKLNSGAISWCSRKQQLVTWSSTEAEYVAAGEAGKEMI 1029
            G+KA+  KW ++ K + DGS  RYKA LV +GF Q EG D+ +  + V +MST+R V  + A  +  LE +DV  A+L+       +    P  F        V +LR SLYGLKQ+ R W    D+F+  IG  R   D C YF   D+    +++ +YVDD++IAG   EK++  K   +++F MK+LG+  ++LG+ + RD+ N                R     +KP S  LG    LS   +   E  R    +   Y S IG L+        +  + T PD    VG+     S    L+G+VD ++A D+  RKSTT +V  L   AISW S  Q++VT S+TEAEYVAA EAGKEMI
Sbjct:  641 GKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGD-LEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYFKSFDNSY--IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHM-SKVPYASAIGSLM--------YAMVCTRPDIAHAVGVVSRFMSASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMI 994          
BLAST of mRNA_H-paniculata_contig1178.1137.1 vs. uniprot
Match: A5CBM1_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5CBM1_VITVI)

HSP 1 Score: 190 bits (482), Expect = 3.520e-50
Identity = 134/372 (36.02%), Postives = 191/372 (51.34%), Query Frame = 1
Query:    1 GRKAIRTKWFFKWKLKEDGSVARYKA*LVAQGFCQVEGEDFFQTSARVARMSTLRTVFSLTAEHDFELEGMDVDAAYLNAPGRRRAICSATPRVFPFSRDMPFVRRLRNSLYGLKQSSRNWNNALDDFLVGIGIDRSTTDSCLYFSRDDDGETGLLVAVYVDDLVIAGRR-EKVDEFKHNTTQRFRMKELGSLLRLLGIEVRRDRLN---------------RRSGYKPSKPKS--LGD--VLSDISAGVQESSRGGSGNSTEYRSMIGPLILQYMQAHFFRYLSTAPDVGITFG---------GKSNGHGLEGFVDTNWAEDVGGRKSTTVYVLKLNSGAISWCSRKQQLVTWSSTEAEYVAAGEAGKEMI 1029
            G+KA+  KW ++ K + DGS  RYKA LV +GF Q EG D+ +  + V +MST+R V  + A  +  LE +DV  A+L+       +    P  F        V +LR SLYGLKQ+ R W    D+F+  IG  R   D C Y    D+    +++ +YVDD++I G   EK++  K   +++F MK+LG+  ++LG+ + RD+ N                R     +KP S  LG    LS   +   E  R    +   Y S IG L+        +  + T PD+    G         GK +   +EG+VD ++A D+  RKSTT +V  L   AISW S  Q++VT S+TEAEYVAA EAGKEMI
Sbjct:  796 GKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGD-LEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDNSY--IILLLYVDDMLIXGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHM-SKVPYASAIGSLM--------YAMVCTRPDIAHAVGVVSRFMSXPGKQHWEAVEGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMI 1154          
BLAST of mRNA_H-paniculata_contig1178.1137.1 vs. uniprot
Match: A0A438HYE0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HYE0_VITVI)

HSP 1 Score: 189 bits (479), Expect = 8.660e-50
Identity = 135/367 (36.78%), Postives = 191/367 (52.04%), Query Frame = 1
Query:    1 GRKAIRTKWFFKWKLKEDGSVARYKA*LVAQGFCQVEGEDFFQTSARVARMSTLRTVFSLTAEHDFELEGMDVDAAYLNAPGRRRAICSATPRVFPFSRDMPFVRRLRNSLYGLKQSSRNWNNALDDFLVGIGIDRSTTDSCLYFSRDDDGETGLLVAVYVDDLVIAGRR-EKVDEFKHNTTQRFRMKELGSLLRLLGIEVRRDRLN---------------RRSGYKPSKPKS--LGD--VLSDISAGVQESSRGGSGNSTEYRSMIGPLILQYMQAHFFRYLSTAPD----VGITFGGKSNGHGLEGFVDTNWAEDVGGRKSTTVYVLKLNSGAISWCSRKQQLVTWSSTEAEYVAAGEAGKEMI 1029
            G+KA+  KW ++ K + DGS  RYKA LV +GF Q EG D+ +  + V +MST+R V  + A  +  LE +DV  A+L+       +    P  F        V +LR SLYGLKQ+ R W    D+F+  IG  R   D C Y    D+    +++ +YVDD++IAG   EK++  K   +++F MK+LG+  ++LG+ + RD+ N                R     +KP S  LG    LS   +   E  R    +   Y S IG L+        +  + T PD    VG+     S    L+G+VD ++A D+  RKSTT +V  L   AISW S  Q++VT S+TEAEYVAA EAGKEMI
Sbjct:  747 GKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGD-LEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDNSY--IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHM-SKVPYASAIGSLM--------YAMVCTRPDIAHAVGVVSRFMSASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMI 1100          
BLAST of mRNA_H-paniculata_contig1178.1137.1 vs. uniprot
Match: A0A438JR94_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JR94_VITVI)

HSP 1 Score: 180 bits (457), Expect = 2.070e-49
Identity = 123/348 (35.34%), Postives = 183/348 (52.59%), Query Frame = 1
Query:    1 GRKAIRTKWFFKWKLKEDGSVARYKA*LVAQGFCQVEGEDFFQTSARVARMSTLRTVFSLTAEHDFELEGMDVDAAYLNAPGRRRAICSATPRVFPFSRDMPFVRRLRNSLYGLKQSSRNWNNALDDFLVGIGIDRSTTDSCLYFSRDDDGETGLLVAVYVDDLVIAGRR-EKVDEFKHNTTQRFRMKELGSLLRLLGIEVRRDRLNRRSGYKPSKPKSLGDVLSDISAGVQESSRGGSGNSTEYRSMIGPLILQYMQAHFFRYLSTAPD----VGITFGGKSNGHGLEGFVDTNWAEDVGGRKSTTVYVLKLNSGAISWCSRKQQLVTWSSTEAEYVAAGEAGKEMI 1029
            G+KA+  KW ++ K + DGS  RYKA L+ +GF Q EG D+ +  + V +MST+R V  +    +  LE +DV  A+L+       +    P  F        V +LR SLYGLKQ+ R W    D+F+  IG  R   D C Y    D+    +++ +YVDD++I G   EK++  K   +++F MK+ G+  ++LG+ + RD+ N     K S+ + +  VLS               N  E + +  PL +  +    +  + T PD    VG+     S    L+ +VD ++A D+  RKSTT +V  L   AISW S  Q++VT S+TEAEYV A EAGKEMI
Sbjct:   22 GKKALHNKWVYRIKNEHDGSK-RYKARLIVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVVAENLHLEQLDVKIAFLHGD-LEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDNSY--IILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDSGAGKQILGMRIIRDKAN--GTLKLSQSEYVKKVLSRF-------------NMNEAKPVSTPLAIGSLM---YAMVCTRPDIAHVVGVVSRFISASLKLQCYVDADFAGDIDSRKSTTGFVFTLGGIAISWASNLQKIVTLSTTEAEYVVATEAGKEMI 347          
BLAST of mRNA_H-paniculata_contig1178.1137.1 vs. uniprot
Match: A0A2N9IBB7_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IBB7_FAGSY)

HSP 1 Score: 187 bits (476), Expect = 2.110e-49
Identity = 123/366 (33.61%), Postives = 188/366 (51.37%), Query Frame = 1
Query:    1 GRKAIRTKWFFKWKLKEDGSVARYKA*LVAQGFCQVEGEDFFQTSARVARMSTLRTVFSLTAEHDFELEGMDVDAAYLNAPGRRRAICSATPRVFPFSRDMPFVRRLRNSLYGLKQSSRNWNNALDDFLVGIGIDRSTTDSCLYFSRDDDGETGLLVAVYVDDLVIAG-RREKVDEFKHNTTQRFRMKELGSLLRLLGIEVRRDRLNR---------------RSGYKPSKPKSLGDVLSDISAGVQESSRGGSGNSTEYRSMIGPLILQYMQAHFFRYLSTAPDVGITFGGKS-------NGHGLEGFVDTNWAEDVGGRKSTTVYVLKLNSGAISWCSRKQQLVTWSSTEAEYVAAGEAGKEMI 1029
            GRKAI  KW +K K   +  V RY+A LV +GF Q EG DF +  + V R++T+R V ++ A  D  LE +DV  A+L+       I    P  F        V +L  SLYGLKQ+ R W    D F++ +G +R ++D C+Y+ R  DG   +++ +YVDD+++AG  ++++ + K    + F MK+LG   ++LG+++ RDR NR               R   +  KP     + + +    + SS     N  E   M        + +  F  + T PD+    G  S       +   + G+VD+++A D+   KST+ YV  L  GA+SW S+ Q +V  S+TEAEYVAA +A KE I
Sbjct:  681 GRKAIGNKWVYKIKRDGNDQVERYRARLVVKGFAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFDLYLEQLDVKTAFLHGE-LEEEIYMLQPEGFEEKGKENLVCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRFGDGNF-IILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKP-----IPTPLPINFKLSSSMSPSNEAERMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMVNPGSDFTVRGYVDSDYAGDLDKSKSTSGYVFTLAGGAVSWVSKLQSIVATSTTEAEYVAATQASKEAI 1039          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1178.1137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438CLT8_VITVI8.690e-5338.73Retrovirus-related Pol polyprotein from transposon... [more]
A0A075B0S6_ROZAC3.930e-5233.77Reverse transcriptase, RNA-dependent DNA polymeras... [more]
A0A1M2VV58_TRAPU5.070e-5236.34Retrovirus-related Pol polyprotein from transposon... [more]
A0A177T2I3_9BASI3.120e-5135.66Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
A0A2N9F319_FAGSY8.630e-5134.26Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A438GDP4_VITVI9.330e-5137.06Retrovirus-related Pol polyprotein from transposon... [more]
A5CBM1_VITVI3.520e-5036.02Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A438HYE0_VITVI8.660e-5036.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JR94_VITVI2.070e-4935.34Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9IBB7_FAGSY2.110e-4933.61Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1178contigH-paniculata_contig1178:23178..24425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue8e-35
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1035
Cds size885
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1178.1137.1prot_H-paniculata_contig1178.1137.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1178 23178..24275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928887.6380584-CDS-H-paniculata_contig1178:23177..234571622928887.6380584-CDS-H-paniculata_contig1178:23177..23457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1178 23178..23457 -
1691480657.274932-CDS-H-paniculata_contig1178:23177..234571691480657.274932-CDS-H-paniculata_contig1178:23177..23457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1178 23178..23457 -
1622928887.651732-CDS-H-paniculata_contig1178:23572..237031622928887.651732-CDS-H-paniculata_contig1178:23572..23703Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1178 23573..23703 -
1691480657.2838066-CDS-H-paniculata_contig1178:23572..237031691480657.2838066-CDS-H-paniculata_contig1178:23572..23703Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1178 23573..23703 -
1622928887.6669972-CDS-H-paniculata_contig1178:23801..242751622928887.6669972-CDS-H-paniculata_contig1178:23801..24275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1178 23802..24275 -
1691480657.2914498-CDS-H-paniculata_contig1178:23801..242751691480657.2914498-CDS-H-paniculata_contig1178:23801..24275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1178 23802..24275 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928887.680347-UTR-H-paniculata_contig1178:24275..244251622928887.680347-UTR-H-paniculata_contig1178:24275..24425Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1178 24276..24425 -
1691480657.2999651-UTR-H-paniculata_contig1178:24275..244251691480657.2999651-UTR-H-paniculata_contig1178:24275..24425Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1178 24276..24425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1178.1137.1

>prot_H-paniculata_contig1178.1137.1 ID=prot_H-paniculata_contig1178.1137.1|Name=mRNA_H-paniculata_contig1178.1137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=295bp
MSTLRTVFSLTAEHDFELEGMDVDAAYLNAPGRRRAICSATPRVFPFSRD
MPFVRRLRNSLYGLKQSSRNWNNALDDFLVGIGIDRSTTDSCLYFSRDDD
GETGLLVAVYVDDLVIAGRREKVDEFKHNTTQRFRMKELGSLLRLLGIEV
RRDRLNRRSGYKPSKPKSLGDVLSDISAGVQESSRGGSGNSTEYRSMIGP
LILQYMQAHFFRYLSTAPDVGITFGGKSNGHGLEGFVDTNWAEDVGGRKS
TTVYVLKLNSGAISWCSRKQQLVTWSSTEAEYVAAGEAGKEMIS*
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mRNA from alignment at H-paniculata_contig1178:23178..24425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1178.1137.1 ID=mRNA_H-paniculata_contig1178.1137.1|Name=mRNA_H-paniculata_contig1178.1137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig1178:23178..24425- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGGAAGGCGATTCGTACGAAATGGTTTTTCAAGTGGAAACTGAAGGA GGACGGCAGCGTGGCACGCTACAAAGCGTGACTGGTGGCTCAAGGCTTTT GCCAGGTGGAGGGTGAAGATTTCTTTCAAACCAGTGCCCGCGTAGCTCGC ATGTCGACGTTACGTACTGTTTTTAGCCTGACCGCCGAGCATGATTTCGA ATTAGAAGGCATGGACGTAGATGCGGCGTATTTGAACGCCCCCGGTAGAA GAAGAGCAATTTGTTCAGCTACCCCTCGAGTTTTCCCCTTCTCTCGAGAC ATGCCGTTTGTGCGCCGCCTGCGTAACAGCCTGTACGGCCTCAAGCAGAG CAGCCGAAACTGGAATAACGCTCTTGACGATTTTCTTGTTGGGATAGGAA TCGACCGTTCCACTACCGACTCATGCTTGTACTTTTCTCGCGACGATGAC GGAGAGACAGGCCTTCTGGTGGCCGTCTATGTTGACGACCTGGTCATTGC TGGTCGCCGTGAGAAAGTAGACGAGTTCAAGCATAACACAACTCAGCGTT TTAGGATGAAAGAGTTGGGTTCTCTCTTACGTTTGTTGGGAATAGAAGTG CGGCGTGACCGCCTTAATCGCAGGGTTGCTACATCCGCGAGGTACTAAAA ATATATGGTTTTGACGAATGTCGAGGGGTACCCACCCCTGTAGACGGTAA AGTGAAGATTTTGGCACCCGAGTCGGGCTACAAGCCCTCCAAACCGAAGT CACTTGGGGATGTACTGTCGGACATAAGCGCTGGAGTACAAGAAAGCAGC AGAGGGGGTAGTGGCAATTCAACTGAATACAGAAGCATGATAGGACCACT CATGTACGCCTCGACAGGAACTAACCTGAAATAGCATACGTGGTAAACCA AGCAGCATGTACTGAAGTCTTCCCTACATGTACTGAAATAGCATACGTGG AGGTCTCATGTAGGGAAGACTTCAGTACATGCAAGCGCATTTTTTTCGTT ATCTCAGTACTGCGCCTGACGTCGGCATTACGTTCGGCGGTAAGAGTAAT GGTCACGGTCTGGAAGGGTTCGTTGATACCAATTGGGCGGAAGACGTCGG GGGCCGAAAGTCTACAACAGTATACGTATTGAAGCTAAACAGCGGTGCGA TAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGAG GCAGAGTACGTTGCTGCAGGAGAAGCAGGAAAGGAGATGATATCTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1178:23178..24425-

>mRNA_H-paniculata_contig1178.1137.1 ID=mRNA_H-paniculata_contig1178.1137.1|Name=mRNA_H-paniculata_contig1178.1137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1770bp|location=Sequence derived from alignment at H-paniculata_contig1178:23178..24425- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGTTACGTACTGTTTTTAGCCTGACCGCCGAGCATGATTTCGA
ATTAGAAGGCATGGACGTAGATGCGGCGTATTTGAACGCCCCCGGTAGAA
GAAGAGCAATTTGTTCAGCTACCCCTCGAGTTTTCCCCTTCTCTCGAGAC
ATGCCGTTTGTGCGCCGCCTGCGTAACAGCCTGTACGGCCTCAAGCAGAG
CAGCCGAAACTGGAATAACGCTCTTGACGATTTTCTTGTTGGGATAGGAA
TCGACCGTTCCACTACCGACTCATGCTTGTACTTTTCTCGCGACGATGAC
GGAGAGACAGGCCTTCTGGTGGCCGTCTATGTTGACGACCTGGTCATTGC
TGGTCGCCGTGAGAAAGTAGACGAGTTCAAGCATAACACAACTCAGCGTT
TTAGGATGAAAGAGTTGGGTTCTCTCTTACGTTTGTTGGGAATAGAAGTG
CGGCGTGACCGCCTTAATCGCAGGATGTCGACGTTACGTACTGTTTTTAG
CCTGACCGCCGAGCATGATTTCGAATTAGAAGGCATGGACGTAGATGCGG
CGTATTTGAACGCCCCCGGTAGAAGAAGAGCAATTTGTTCAGCTACCCCT
CGAGTTTTCCCCTTCTCTCGAGACATGCCGTTTGTGCGCCGCCTGCGTAA
CAGCCTGTACGGCCTCAAGCAGAGCAGCCGAAACTGGAATAACGCTCTTG
ACGATTTTCTTGTTGGGATAGGAATCGACCGTTCCACTACCGACTCATGC
TTGTACTTTTCTCGCGACGATGACGGAGAGACAGGCCTTCTGGTGGCCGT
CTATGTTGACGACCTGGTCATTGCTGGTCGCCGTGAGAAAGTAGACGAGT
TCAAGCATAACACAACTCAGCGTTTTAGGATGAAAGAGTTGGGTTCTCTC
TTACGTTTGTTGGGAATAGAAGTGCGGCGTGACCGCCTTAATCGCAGGTC
GGGCTACAAGCCCTCCAAACCGAAGTCACTTGGGGATGTACTGTCGGACA
TAAGCGCTGGAGTACAAGAAAGCAGCAGAGGGGGTAGTGGCAATTCAACT
GAATACAGAAGCATGATAGGACCACTCATTCGGGCTACAAGCCCTCCAAA
CCGAAGTCACTTGGGGATGTACTGTCGGACATAAGCGCTGGAGTACAAGA
AAGCAGCAGAGGGGGTAGTGGCAATTCAACTGAATACAGAAGCATGATAG
GACCACTCATACTTCAGTACATGCAAGCGCATTTTTTTCGTTATCTCAGT
ACTGCGCCTGACGTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGG
TCTGGAAGGGTTCGTTGATACCAATTGGGCGGAAGACGTCGGGGGCCGAA
AGTCTACAACAGTATACGTATTGAAGCTAAACAGCGGTGCGATAAGTTGG
TGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTA
CGTTGCTGCAGGAGAAGCAGGAAAGGAGATGATATCTTAGACTTCAGTAC
ATGCAAGCGCATTTTTTTCGTTATCTCAGTACTGCGCCTGACGTCGGCAT
TACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGGTTCGTTGATA
CCAATTGGGCGGAAGACGTCGGGGGCCGAAAGTCTACAACAGTATACGTA
TTGAAGCTAAACAGCGGTGCGATAAGTTGGTGCTCTAGGAAGCAACAGTT
AGTCACGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGCAG
GAAAGGAGATGATATCTTAG
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