prot_H-paniculata_contig41133.10597.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig41133.10597.1
Unique Nameprot_H-paniculata_contig41133.10597.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length91
Homology
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.320e-18
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 0
Query:    1 MDVDATYLNAPVEEELFVKLPPEFSPF-SRDIPFVRRLRKSLYGLKQSGRNWNKTLDDFLVGIGLDRFTTDSCLYFSHGDGGETNVL 86
            MDVD  YL + +EE++++K PP +  + S     V RLRKSLYGLKQSGRNW+K +D +  G G    +TD CLY   G  GE  ++
Sbjct:  342 MDVDTAYLQSDLEEKVYIKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSTDPCLYVKFGSSGEMEMV 428          
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: W7TIT5_9STRA (Reverse transcriptase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIT5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-17
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 0
Query:    1 MDVDATYLNAPVEEELFVKLPPEFSPFSRDIP-FVRRLRKSLYGLKQSGRNWNKTLDDFLVGIGLDRFTTDSCLYFSHGDGGE 82
            MDVD  YL + +EE+++VK PP +     +    V RLRKSLYGLKQSGRNW+K +D +  G G    + D CLY   G  GE
Sbjct:    1 MDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEVLVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYTKFGSSGE 83          
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.640e-17
Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = 0
Query:    1 MDVDATYLNAPVEEELFVKLPPEFS---PFSRDIPFVRRLRKSLYGLKQSGRNWNKTLDDFLVGIGLDRFTTDSCLYFSHGDGGETNVLV 87
            MDVD  YL + +EE+++VK PP +    P   ++  V RLRKSLYGLKQSGRNW+K +D +  G G    + D CLY   G  GE  V+V
Sbjct:   84 MDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLVIV 171          
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.000e-17
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 0
Query:    1 MDVDATYLNAPVEEELFVKLPPEFSPF-SRDIPFVRRLRKSLYGLKQSGRNWNKTLDDFLVGIGLDRFTTDSCLYFSHGDGGETNVLV 87
            MDV+  YL + +EE+++VK PP +  + S     V RLRKSLYGLKQSGRNW+K +D +  G G    + D CLY   G  GE  V+V
Sbjct:   84 MDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIV 171          
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: W7TJI6_9STRA (Retrotransposon ty1-copia subclass n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.760e-16
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0
Query:    1 MDVDATYLNAPVEEELFVKLPP---EFSPFSRDIPFVRRLRKSLYGLKQSGRNWNKTLDDFLVGIGLDRFTTDSCLYFSHGDGGETNVLV 87
            MDVD  YL + +EE+++VK PP   ++ P   ++  + RL KSLYGLKQSGRNW+K +D++  G      + D CLY   G  GE  V+V
Sbjct:  126 MDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEEL--LCRLHKSLYGLKQSGRNWHKKIDEWFRGYCFHSSSADPCLYVKFGSSGEILVIV 213          
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.240e-16
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 0
Query:    1 MDVDATYLNAPVEEELFVKLPPEFSPFSRDI-PFVRRLRKSLYGLKQSGRNWNKTLDDFLVGIGLDRFTTDSCLYFSHGDGGETNVLV 87
            MDVD  YL + +EE++++K PP +  +  +    V RLRKSLYGLKQSGRNW+K +D +  G GL     D CLY      GE  V+V
Sbjct:  304 MDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEILVIV 391          
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: W7TH08_9STRA (RNA-dependent DNA polymerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH08_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.590e-16
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 0
Query:    1 MDVDATYLNAPVEEELFVKLPPEFSPFSRDI-PFVRRLRKSLYGLKQSGRNWNKTLDDFLVGIGLDRFTTDSCLYFSHGDGGETNVLV 87
            MDVD  YL + +EE++ +K PP +  +  +    V RLRKSLYGLKQSGRNW+K +D +  G      + D CLY   G  GE  ++V
Sbjct:  169 MDVDTAYLQSDLEEKVHIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYAFHPSSADPCLYVKFGSSGEMLIIV 256          
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: A0A1M2VAF4_TRAPU (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VAF4_TRAPU)

HSP 1 Score: 77.0 bits (188), Expect = 5.190e-16
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 0
Query:    1 MDVDATYLNAPVEEELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGRNWNKTLDDFLVGIGLDRFTTDSCLYFSHGDGGETNVLV 87
            MDV A YLN  ++EEL++ LPP+    + +     RL++SLYGLKQ+GR WNKTLD  L G+G +R  +++CLY    + G+   LV
Sbjct:    1 MDVSAAYLNGELDEELYL-LPPD--GVAIEPGHCWRLKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLNSETCLYVFRDNKGQLCFLV 84          
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.790e-16
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 0
Query:    1 MDVDATYLNAPVEEELFVKLPPEFSPF-SRDIPFVRRLRKSLYGLKQSGRNWNKTLDDFLVGIGLDRFTTDSCLYFSHGDGGETNVLV 87
            MDV+  YL + +EE+++VK P  +  + S     V RLRKSLYGLKQSGRNW+K +D +  G G    + D CLY   G  GE  V+V
Sbjct:  524 MDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIV 611          
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: A0A7D9L0S1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L0S1_PARCT)

HSP 1 Score: 78.6 bits (192), Expect = 6.250e-16
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 0
Query:    1 MDVDATYLNAPVEEELFVKLPPEFSPFSRDIPF-VRRLRKSLYGLKQSGRNWNKTLDDFLVGIGLDRFTTDSCLYFSHGDGGETNVLVAV 89
            MDV   YLNAP++ EL+V+ P  F+   +D  + V +LRKSLYGLKQSGRNWN  L   LV  G  +  +DSC+Y        T V++ V
Sbjct:   91 MDVKTAYLNAPIDCELYVEQPEGFTMTGKDGEYLVYKLRKSLYGLKQSGRNWNSVLHSHLVSEGFIQSQSDSCVYTKISGKSMTIVIIWV 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T0D1_9STRA7.320e-1847.13Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TIT5_9STRA1.100e-1748.19Reverse transcriptase n=1 Tax=Nannochloropsis gadi... [more]
W7TII5_9STRA1.640e-1747.78Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA3.000e-1747.73Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7TJI6_9STRA1.760e-1644.44Retrotransposon ty1-copia subclass n=2 Tax=Nannoch... [more]
W7TJ26_9STRA2.240e-1646.59Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TH08_9STRA3.590e-1644.32RNA-dependent DNA polymerase n=1 Tax=Nannochlorops... [more]
A0A1M2VAF4_TRAPU5.190e-1645.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7T0T3_9STRA5.790e-1646.59Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A7D9L0S1_PARCT6.250e-1646.67Retrovirus-related Pol poly from transposon TNT 1-... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..89
e-value: 5.4E-18
score: 65.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41133contigH-paniculata_contig41133:1201..1473 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41133.10597.1mRNA_H-paniculata_contig41133.10597.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig41133 441..1485 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig41133.10597.1 ID=prot_H-paniculata_contig41133.10597.1|Name=mRNA_H-paniculata_contig41133.10597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MDVDATYLNAPVEEELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGRN
WNKTLDDFLVGIGLDRFTTDSCLYFSHGDGGETNVLVAVC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2