mRNA_H-paniculata_contig41133.10597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: A0A2N9J6A9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J6A9_FAGSY) HSP 1 Score: 124 bits (311), Expect = 4.520e-28 Identity = 62/160 (38.75%), Postives = 100/160 (62.50%), Query Frame = 2
Query: 278 YVDDPGIVGRRE-KVDEFKHNISQCFRMKDLGSLSPVLGIEVRRDRPNGAITISQGSYIREVLQRYDFDECRGVTTPAEGNVKISAPEPDIAYAVHQTARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGRSNGHGLEGFVDADWAEDVEDRKSIIGY 754
YVDD I + +V+ K + + F MKDLG+ +LG+E+RRDR + +SQ +YIR+VL+++ + + V+TP + ++S +PD+A+AV +R M +P RE ++ K IFRYL + GI F + + + G+VDAD+A +V+DR+S GY
Sbjct: 887 YVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGAAKKILGMEIRRDREARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFRLSGSQPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGY 1046
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: A0A146H7K8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H7K8_MYCCL) HSP 1 Score: 113 bits (283), Expect = 3.850e-25 Identity = 68/207 (32.85%), Postives = 104/207 (50.24%), Query Frame = 2
Query: 230 CTFPTAMGERQTFWWPYVDDPGIVGR-REKVDEFKHNISQCFRMKDLGSLSPVLGIEVRRDRPNGAITISQGSYIREVLQRYDFDECRGVTTPA--EGNVKI---------SAPE--------------------PDIAYAVHQTARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGRSNGHGLEGFVDADWAEDVEDRKSIIGY 754
C + Q + +VDD I+ +++ + + + F MKD+G ++GIEV RDR G +T+SQ YI +L RY F V+TP + N K+ +AP PDIAYAV + ++ +P E + CKR+FRYLS + G+ +G + +G EG+ DAD+A +++DRKSI GY
Sbjct: 69 CVYYRERDGEQVWVTVWVDDLIILATSKDEGERVRKELGTLFEMKDMGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSNLNAVSTPLVPDANTKMRQLPKDAPPAAPSVRAEYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFRYLSGTRNYGLVYGPQRDGVVFEGYCDADYAANLDDRKSISGY 275
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN) HSP 1 Score: 114 bits (286), Expect = 9.180e-25 Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 2
Query: 278 YVDDPGIVG-RREKVDEFKHNISQCFRMKDLGSLSPVLGIEVRRDRPNGAITISQGSYIREVLQRYDFDECRGVTTPAEGNVKISAPE-------------------------------PDIAYAVHQTARRMEDPCREDFSTCKRIFRYLSTVPDLGITFG-GRSNGHGLEGFVDADWAEDVEDRKSIIGY 754
YVDD I ++++ E K +S F MKDLG+ +LG+E+RRDR G +T+SQ YI +VL+R++ C+ + TP + K+S+ E PD+A+AV +R M +P R + K I RYL ++G++F R++ +G+ G+VD+D+A D++ RKS+ Y
Sbjct: 963 YVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLSSHECPKSEEDKEDMSLVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRYMHNPGRMHWKAVKCILRYLKGTSNIGLSFEKSRASPNGIVGYVDSDYAGDLDARKSLSSY 1154
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: A0A1U8ISZ3_GOSHI (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8ISZ3_GOSHI) HSP 1 Score: 108 bits (271), Expect = 1.160e-24 Identity = 74/212 (34.91%), Postives = 106/212 (50.00%), Query Frame = 2
Query: 278 YVDDPGIVGR-REKVDEFKHNISQCFRMKDLGSLSPVLGIEVRRDRPNGAITISQGSYIREVLQRYDFDECRGVTTPAEGNVKISAPE------------------------PDIAYAVHQTARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGRSNGHGLEGFVDADWAEDVEDRKSIIGYDSSSTVVR*VGALRSNS*SRGPIQRQST 838
YVDD I G +++D+F + F +KDLG LS LGIEV+ NG I +SQ YIR++LQ+ D + TP N ++A E PDIAY+V++ + M P KRI RYL + + F R++ LEG+ DA W D++DR+S GY SS ++ GA RS++ P QR++T
Sbjct: 27 YVDDIIITGSDSQEIDQFVKTLDAQFALKDLGQLSYFLGIEVKHTT-NG-IALSQTKYIRDLLQKVAMDRSNALPTPMVANNHLTAEEGSPLEDEHQYRSIVGALQYIVITRPDIAYSVNKVCQYMHKPLTGHLKAVKRILRYLQGTINYELQFT-RASKLLLEGYSDASWGSDIDDRRSTSGYVSSLEEIQSRGARRSSTLCLVPQQRRNT 235
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL) HSP 1 Score: 112 bits (281), Expect = 1.850e-24 Identity = 65/209 (31.10%), Postives = 105/209 (50.24%), Query Frame = 2
Query: 221 THACTFPTAMGERQTFWWPYVDDPGIVGRRE-KVDEFKHNISQCFRMKDLGSLSPVLGIEVRRDRPNGAITISQGSYIREVLQRYDFDECRGVTTPAEGNVKISAPE-------------------------------PDIAYAVHQTARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGRSNGHGLEGFVDADWAEDVEDRKSIIG 751
+ C + G T+ YVDD + GR + +VDE K I+ FR+K+LG + +LG+E+ DR ++I+Q Y++ +++R++ CR VT P E ++K+S + PDIA+AV +R ME+P ++ R+ RYL + D GI++GG + F DADW V+DR+S+ G
Sbjct: 169 SDTCIYVGRAGGDTTYICLYVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSG 377
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: A0A6H5H298_9HEMI (CCHC-type domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5H298_9HEMI) HSP 1 Score: 113 bits (283), Expect = 2.100e-24 Identity = 61/202 (30.20%), Postives = 105/202 (51.98%), Query Frame = 2
Query: 227 ACTFPTAMGERQTFWWPYVDDPGIVGRRE-KVDEFKHNISQCFRMKDLGSLSPVLGIEVRRDRPNGAITISQGSYIREVLQRYDFDECRGVTTPAEGNVKISAPE-------------------------PDIAYAVHQTARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGRSNGHGLEGFVDADWAEDVEDRKSIIGY 754
+C + + + + + YVDD I ++ FK + Q F M +LG++ LG+EV RDR G I + Q +YI ++L+++ +C+ ++TP E N++++ + PDI++A++ +R E E ++ KR+ RYL LG+TF + + +E +VDADWA D EDRKS+ G+
Sbjct: 595 SCLYSKITPKFKIYCFIYVDDLIIASDSLIQMKNFKSKLYQNFDMVNLGNVKSFLGLEVERDRDKGIIKLHQSAYINQLLRKFQMQDCKEISTPIEKNLRLNKAKSDEEKTEEPYRQLVGCLMYLMIGSRPDISFALNYFSRYQEYATNEHWTHLKRVLRYLKATNRLGLTFSRNNCENLIESYVDADWANDFEDRKSVTGF 796
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: A0A1J6IUK8_NICAT (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IUK8_NICAT) HSP 1 Score: 110 bits (274), Expect = 2.600e-24 Identity = 66/184 (35.87%), Postives = 93/184 (50.54%), Query Frame = 2
Query: 278 YVDDPGIVGRREKV-DEFKHNISQCFRMKDLGSLSPVLGIEVRRDRPNGAITISQGSYIREVLQRYDFDECRGVTTPAEGNVKIS------------------------APEPDIAYAVHQTARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGRSNGHGLEGFVDADWAEDVEDRKSIIGY 754
YVDD G K+ +EFK +++ F M D+G +S LGI+V++ R +G I ISQG Y +E+L++++ D C V+TP E VKIS PDI Y V +R ME P KRI RY+ D GI + + G+ D+DWA D++DRKS G+
Sbjct: 88 YVDDLIFTGNNPKMFEEFKEAMAREFEMTDIGLMSYYLGIQVQQ-RKDG-IFISQGEYAKEILKKFEMDNCNPVSTPVECGVKISKHGDGENVNPTFFKSLVGSLRYLTCTRPDILYGVGLVSRFMEAPTTSHLKVAKRILRYIKDTLDYGILYSSSKDSK-FVGYCDSDWAGDIDDRKSTTGF 268
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: A0A176W9J0_MARPO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176W9J0_MARPO) HSP 1 Score: 112 bits (281), Expect = 2.700e-24 Identity = 62/192 (32.29%), Postives = 97/192 (50.52%), Query Frame = 2
Query: 278 YVDDPGIVGRREK-VDEFKHNISQCFRMKDLGSLSPVLGIEVRRDRPNGAITISQGSYIREVLQRYDFDECRGVTTPAEGNVKISAPE-------------------------------PDIAYAVHQTARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGR-SNGHGLEGFVDADWAEDVEDRKSIIGY 754
YVDD I+ + + VDE K + F+MKD+G +LG+E+ RD + +SQG Y+R +L R++ + +GV TP + K+SA + PDIA+A+ + +R M +P + + K I RYL + D G+ F G N L G+VDAD+ +D++ R+S GY
Sbjct: 297 YVDDMLILAKNQSDVDECKSKLKSAFKMKDMGESKRILGMEIHRDHEQKKLWLSQGKYVRRILDRFNMMDSKGVWTPLAAHFKLSAAQCPTDAVEKGNMSCVPYEQAVGSLMYLMVCTRPDIAFAMGKVSRYMSNPGKVHWEAVKWILRYLKSTLDYGLLFDGLLDNAKSLFGYVDADYGQDLDKRRSTTGY 488
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: A0A438HHN1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HHN1_VITVI) HSP 1 Score: 109 bits (273), Expect = 3.110e-24 Identity = 65/191 (34.03%), Postives = 99/191 (51.83%), Query Frame = 2
Query: 278 YVDDPGIVGRR-EKVDEFKHNISQCFRMKDLGSLSPVLGIEVRRDRPNGAITISQGSYIREVLQRYDFDECRGVTTPAEGNVKISAPE-------------------------------PDIAYAVHQTARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGRSNGHGLEGFVDADWAEDVEDRKSIIGY 754
YVDD IVG EK++ K +S+ F MKDLG+ +LG+ + RD+ NG + +SQ Y+++VL R++ +E + V+TP + K+S + PDIA+AV +R M P ++ + K I RYL D + F G S L+G+VDAD+A D++ RKS G+
Sbjct: 46 YVDDMLIVGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGF 234
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Match: UPI000CED1FCF (uncharacterized protein LOC112096267 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CED1FCF) HSP 1 Score: 107 bits (267), Expect = 3.290e-24 Identity = 66/188 (35.11%), Postives = 92/188 (48.94%), Query Frame = 2
Query: 278 YVDDPGIVGRREK-VDEFKHNISQCFRMKDLGSLSPVLGIEVRRDRPNGAITISQGSYIREVLQRYDFDECRGVTTPAEGNVKISAP----------------------------EPDIAYAVHQTARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGRSNGHGLEGFVDADWAEDVEDRKSIIGY 754
YVDD I G K +++F S F +KDLGSLS LGIEV NG+I +SQ YIR++L++ + C+G TP K+ P+IA+AVH+ ++ + P + CKR+ RYL D G+ FG L G+ DADWA D++DRKS+ Y
Sbjct: 5 YVDDILITGPNSKALEDFISYFSSVFALKDLGSLSYFLGIEV--SYYNGSIFLSQRKYIRDLLEKAELLSCKGCDTPMTTGTKLHKQVDGSLGQFIDDPSAYRSFVGGLQYVILTRPEIAFAVHKLSQYVAMPTLQHLMACKRVLRYLKETQDYGLKFGVEGE-LTLTGYTDADWACDIDDRKSVGAY 189 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41133.10597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig41133.10597.1 >prot_H-paniculata_contig41133.10597.1 ID=prot_H-paniculata_contig41133.10597.1|Name=mRNA_H-paniculata_contig41133.10597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp MDVDATYLNAPVEEELFVKLPPEFSPFSRDIPFVRRLRKSLYGLKQSGRNback to top mRNA from alignment at H-paniculata_contig41133:441..1485- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig41133.10597.1 ID=mRNA_H-paniculata_contig41133.10597.1|Name=mRNA_H-paniculata_contig41133.10597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1045bp|location=Sequence derived from alignment at H-paniculata_contig41133:441..1485- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig41133:441..1485- >mRNA_H-paniculata_contig41133.10597.1 ID=mRNA_H-paniculata_contig41133.10597.1|Name=mRNA_H-paniculata_contig41133.10597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig41133:441..1485- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |