mRNA_H-paniculata_contig40011.10376.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40011.10376.1
Unique NamemRNA_H-paniculata_contig40011.10376.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: Q7XTU6_ORYSJ (OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XTU6_ORYSJ)

HSP 1 Score: 88.6 bits (218), Expect = 7.010e-18
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  129 ANMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
            A +  R+W EA  AAVY LNR+PT+  +G T YE  HG  P ++HLRVFGC  YV       RKL+++ +  VF+ Y++ S +YR+Y+
Sbjct:  698 AGLPARFWGEAVVAAVYVLNRSPTKALDGVTPYEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYD 785          
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A177U095_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U095_9BASI)

HSP 1 Score: 87.4 bits (215), Expect = 1.750e-17
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  132 NMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRR-KLEEKASVGVFLRYDEDSPSYRIY 389
            N+ L YWAEAA  A Y  N  P+RP  G T +E  +G  P++DHLR+FGC A+VM   + R   L  +A VGVF+ YD+ S  YR++
Sbjct:  338 NLPLVYWAEAASTAAYLRNHRPSRPLGGKTPFELWYGTPPRIDHLRIFGCLAFVMLPDKAREHSLSARARVGVFIGYDKYSKGYRVH 424          
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: Q60DG5_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q60DG5_ORYSJ)

HSP 1 Score: 87.0 bits (214), Expect = 2.390e-17
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  129 ANMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
            A M  ++W EA  AAVY LNR+PT+  +G T YE  HG  P ++HL+VFGC  YV       RKL+++ +  VF+ Y++ S +YR+Y+
Sbjct:  361 AGMPAQFWGEAVVAAVYLLNRSPTKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYD 448          
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: Q7G6A8_ORYSJ (Os10g0130700 protein n=3 Tax=Oryza sativa TaxID=4530 RepID=Q7G6A8_ORYSJ)

HSP 1 Score: 86.7 bits (213), Expect = 3.310e-17
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  129 ANMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
            A M   +W EA  AAVY LNR+PT+  NG T +E  HG  P ++HLRVFGC  YV       RKL+++ +  VF+ Y++ S +YR+Y+
Sbjct:  698 AGMPACFWGEAVVAAVYVLNRSPTKALNGVTPHEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYD 785          
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A6H5FV69_9HEMI (Uncharacterized protein n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FV69_9HEMI)

HSP 1 Score: 84.0 bits (206), Expect = 2.880e-16
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  147 YWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
            +WAEA  AA Y LNR+P + H+  T  E   G  PKL H+R+FGC A+    S +RRKL+++A+V +FL Y  +S +YR+YN
Sbjct:  167 FWAEAVYAAAYLLNRSPCKSHSS-TPEEIWSGKKPKLSHIRIFGCKAFAHVPSDRRRKLDKRATVCIFLGYSLESKAYRLYN 247          
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A251UCI2_HELAN (Putative ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UCI2_HELAN)

HSP 1 Score: 82.8 bits (203), Expect = 7.150e-16
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 3
Query:  132 NMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
            NM   +W EA R A+Y LNR PT+     T +E L G  P L+HL+VFGCTAY      +++KL+++++  V+L  +E S +YR+Y+
Sbjct:  168 NMPQNFWGEAVRHAIYVLNRVPTKALVNKTPFEALKGRKPNLEHLKVFGCTAYAKVLPLQQKKLDDRSAPMVYLGIEEGSKAYRLYD 254          
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A251UIF2_HELAN (Integrase catalytic domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UIF2_HELAN)

HSP 1 Score: 82.8 bits (203), Expect = 7.360e-16
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  147 YWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
            YWAEA   A Y LNR  T+     T YE  +G  P ++HL+VFGC AYV    Q+R KL++K    VF+ Y E+S  Y++YN
Sbjct:  621 YWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYN 702          
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A251SKN6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SKN6_HELAN)

HSP 1 Score: 82.8 bits (203), Expect = 7.490e-16
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  147 YWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
            YWAEA   A Y LNR  T+     T YE  +G  P ++HL+VFGC AYV    Q+R KL++K    VF+ Y E+S  Y++YN
Sbjct: 1373 YWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYN 1454          
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 82.4 bits (202), Expect = 9.560e-16
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  129 ANMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
            A +  ++WAEA   AVY  NR+PT+   G T +E   G  PK+DHLR+FGCT Y      +R+KL+ KA   + L Y  ++  YR+Y+
Sbjct:   69 AKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGYGTETKGYRLYD 156          
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A2Z6LTJ1_TRISU (Integrase catalytic domain-containing protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LTJ1_TRISU)

HSP 1 Score: 81.6 bits (200), Expect = 1.790e-15
Identity = 40/82 (48.78%), Postives = 46/82 (56.10%), Query Frame = 3
Query:  147 YWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
            +WAEA   AVY LNR PT+     T  E   G  P   HLRVFG   Y+    QKR KLE+K + G+FL Y   S  YRIYN
Sbjct:  597 FWAEAVYTAVYILNRCPTKAVQDKTPIETWCGKKPSAKHLRVFGSICYIHVPKQKRHKLEDKTTKGIFLGYSTQSKGYRIYN 678          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q7XTU6_ORYSJ7.010e-1845.45OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subs... [more]
A0A177U095_9BASI1.750e-1747.13Integrase catalytic domain-containing protein n=2 ... [more]
Q60DG5_ORYSJ2.390e-1744.32Putative polyprotein n=3 Tax=Oryza sativa subsp. j... [more]
Q7G6A8_ORYSJ3.310e-1745.45Os10g0130700 protein n=3 Tax=Oryza sativa TaxID=45... [more]
A0A6H5FV69_9HEMI2.880e-1647.56Uncharacterized protein n=2 Tax=Nesidiocoris tenui... [more]
A0A251UCI2_HELAN7.150e-1642.53Putative ribonuclease H-like domain, Reverse trans... [more]
A0A251UIF2_HELAN7.360e-1646.34Integrase catalytic domain-containing protein n=1 ... [more]
A0A251SKN6_HELAN7.490e-1646.34Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A498M2F0_LABRO9.560e-1642.05Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2Z6LTJ1_TRISU1.790e-1548.78Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40011contigH-paniculata_contig40011:1008..1399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.5
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog3641.EOY20321
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs383KH@33090,3GQES@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size392
Cds size273
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930226.3643835-UTR-H-paniculata_contig40011:1007..11261622930226.3643835-UTR-H-paniculata_contig40011:1007..1126Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40011 1008..1126 +
1691481199.3566494-UTR-H-paniculata_contig40011:1007..11261691481199.3566494-UTR-H-paniculata_contig40011:1007..1126Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40011 1008..1126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930226.4157088-CDS-H-paniculata_contig40011:1126..13991622930226.4157088-CDS-H-paniculata_contig40011:1126..1399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40011 1127..1399 +
1691481199.3658733-CDS-H-paniculata_contig40011:1126..13991691481199.3658733-CDS-H-paniculata_contig40011:1126..1399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40011 1127..1399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40011.10376.1prot_H-paniculata_contig40011.10376.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40011 1127..1399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40011.10376.1

>prot_H-paniculata_contig40011.10376.1 ID=prot_H-paniculata_contig40011.10376.1|Name=mRNA_H-paniculata_contig40011.10376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MIIANMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLR
VFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN
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mRNA from alignment at H-paniculata_contig40011:1008..1399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40011.10376.1 ID=mRNA_H-paniculata_contig40011.10376.1|Name=mRNA_H-paniculata_contig40011.10376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=392bp|location=Sequence derived from alignment at H-paniculata_contig40011:1008..1399+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACAGTTAATAACGGAAAATCGCTTCAAGCAAGAATGTTCTGCCGC CTATACGCCGCAGCAAAACGGTGTGGCGGAGCGCAGCTGGCGTAGCGTTT TCGAGATGACCCGAAGTAGATGATCATCGCCAACATGGGCCTCAGGTATT GGGCGGAGGCGGCGCGCGCGGCGGTCTACTGCTTAAATCGCGCCCCGACG CGACCGCACAACGGAGGGACGTCGTATGAGAAATTGCACGGCATGACACC AAAGCTTGACCACCTTCGTGTCTTCGGCTGCACAGCATACGTGATGTTCC AGTCGCAGAAGAGGCGAAAACTCGAAGAAAAAGCATCGGTGGGGGTGTTT CTGAGATACGACGAGGATAGCCCGAGTTATCGCATATATAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig40011:1008..1399+

>mRNA_H-paniculata_contig40011.10376.1 ID=mRNA_H-paniculata_contig40011.10376.1|Name=mRNA_H-paniculata_contig40011.10376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig40011:1008..1399+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCATCGCCAACATGGGCCTCAGGTATTGGGCGGAGGCGGCGCGCGC
GGCGGTCTACTGCTTAAATCGCGCCCCGACGCGACCGCACAACGGAGGGA
CGTCGTATGAGAAATTGCACGGCATGACACCAAAGCTTGACCACCTTCGT
GTCTTCGGCTGCACAGCATACGTGATGTTCCAGTCGCAGAAGAGGCGAAA
ACTCGAAGAAAAAGCATCGGTGGGGGTGTTTCTGAGATACGACGAGGATA
GCCCGAGTTATCGCATATATAACATGATCATCGCCAACATGGGCCTCAGG
TATTGGGCGGAGGCGGCGCGCGCGGCGGTCTACTGCTTAAATCGCGCCCC
GACGCGACCGCACAACGGAGGGACGTCGTATGAGAAATTGCACGGCATGA
CACCAAAGCTTGACCACCTTCGTGTCTTCGGCTGCACAGCATACGTGATG
TTCCAGTCGCAGAAGAGGCGAAAACTCGAAGAAAAAGCATCGGTGGGGGT
GTTTCTGAGATACGACGAGGATAGCCCGAGTTATCGCATATATAAC
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