mRNA_H-paniculata_contig40011.10376.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: Q7XTU6_ORYSJ (OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XTU6_ORYSJ) HSP 1 Score: 88.6 bits (218), Expect = 7.010e-18 Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 3
Query: 129 ANMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
A + R+W EA AAVY LNR+PT+ +G T YE HG P ++HLRVFGC YV RKL+++ + VF+ Y++ S +YR+Y+
Sbjct: 698 AGLPARFWGEAVVAAVYVLNRSPTKALDGVTPYEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYD 785
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A177U095_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U095_9BASI) HSP 1 Score: 87.4 bits (215), Expect = 1.750e-17 Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 3
Query: 132 NMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRR-KLEEKASVGVFLRYDEDSPSYRIY 389
N+ L YWAEAA A Y N P+RP G T +E +G P++DHLR+FGC A+VM + R L +A VGVF+ YD+ S YR++
Sbjct: 338 NLPLVYWAEAASTAAYLRNHRPSRPLGGKTPFELWYGTPPRIDHLRIFGCLAFVMLPDKAREHSLSARARVGVFIGYDKYSKGYRVH 424
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: Q60DG5_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q60DG5_ORYSJ) HSP 1 Score: 87.0 bits (214), Expect = 2.390e-17 Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 3
Query: 129 ANMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
A M ++W EA AAVY LNR+PT+ +G T YE HG P ++HL+VFGC YV RKL+++ + VF+ Y++ S +YR+Y+
Sbjct: 361 AGMPAQFWGEAVVAAVYLLNRSPTKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYD 448
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: Q7G6A8_ORYSJ (Os10g0130700 protein n=3 Tax=Oryza sativa TaxID=4530 RepID=Q7G6A8_ORYSJ) HSP 1 Score: 86.7 bits (213), Expect = 3.310e-17 Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 3
Query: 129 ANMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
A M +W EA AAVY LNR+PT+ NG T +E HG P ++HLRVFGC YV RKL+++ + VF+ Y++ S +YR+Y+
Sbjct: 698 AGMPACFWGEAVVAAVYVLNRSPTKALNGVTPHEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYD 785
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A6H5FV69_9HEMI (Uncharacterized protein n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FV69_9HEMI) HSP 1 Score: 84.0 bits (206), Expect = 2.880e-16 Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 3
Query: 147 YWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
+WAEA AA Y LNR+P + H+ T E G PKL H+R+FGC A+ S +RRKL+++A+V +FL Y +S +YR+YN
Sbjct: 167 FWAEAVYAAAYLLNRSPCKSHSS-TPEEIWSGKKPKLSHIRIFGCKAFAHVPSDRRRKLDKRATVCIFLGYSLESKAYRLYN 247
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A251UCI2_HELAN (Putative ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UCI2_HELAN) HSP 1 Score: 82.8 bits (203), Expect = 7.150e-16 Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 3
Query: 132 NMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
NM +W EA R A+Y LNR PT+ T +E L G P L+HL+VFGCTAY +++KL+++++ V+L +E S +YR+Y+
Sbjct: 168 NMPQNFWGEAVRHAIYVLNRVPTKALVNKTPFEALKGRKPNLEHLKVFGCTAYAKVLPLQQKKLDDRSAPMVYLGIEEGSKAYRLYD 254
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A251UIF2_HELAN (Integrase catalytic domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UIF2_HELAN) HSP 1 Score: 82.8 bits (203), Expect = 7.360e-16 Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 3
Query: 147 YWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
YWAEA A Y LNR T+ T YE +G P ++HL+VFGC AYV Q+R KL++K VF+ Y E+S Y++YN
Sbjct: 621 YWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYN 702
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A251SKN6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SKN6_HELAN) HSP 1 Score: 82.8 bits (203), Expect = 7.490e-16 Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 3
Query: 147 YWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
YWAEA A Y LNR T+ T YE +G P ++HL+VFGC AYV Q+R KL++K VF+ Y E+S Y++YN
Sbjct: 1373 YWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYN 1454
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO) HSP 1 Score: 82.4 bits (202), Expect = 9.560e-16 Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 3
Query: 129 ANMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
A + ++WAEA AVY NR+PT+ G T +E G PK+DHLR+FGCT Y +R+KL+ KA + L Y ++ YR+Y+
Sbjct: 69 AKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGYGTETKGYRLYD 156
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Match: A0A2Z6LTJ1_TRISU (Integrase catalytic domain-containing protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LTJ1_TRISU) HSP 1 Score: 81.6 bits (200), Expect = 1.790e-15 Identity = 40/82 (48.78%), Postives = 46/82 (56.10%), Query Frame = 3
Query: 147 YWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRVFGCTAYVMFQSQKRRKLEEKASVGVFLRYDEDSPSYRIYN 392
+WAEA AVY LNR PT+ T E G P HLRVFG Y+ QKR KLE+K + G+FL Y S YRIYN
Sbjct: 597 FWAEAVYTAVYILNRCPTKAVQDKTPIETWCGKKPSAKHLRVFGSICYIHVPKQKRHKLEDKTTKGIFLGYSTQSKGYRIYN 678 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40011.10376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig40011.10376.1 >prot_H-paniculata_contig40011.10376.1 ID=prot_H-paniculata_contig40011.10376.1|Name=mRNA_H-paniculata_contig40011.10376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp MIIANMGLRYWAEAARAAVYCLNRAPTRPHNGGTSYEKLHGMTPKLDHLRback to top mRNA from alignment at H-paniculata_contig40011:1008..1399+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig40011.10376.1 ID=mRNA_H-paniculata_contig40011.10376.1|Name=mRNA_H-paniculata_contig40011.10376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=392bp|location=Sequence derived from alignment at H-paniculata_contig40011:1008..1399+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig40011:1008..1399+ >mRNA_H-paniculata_contig40011.10376.1 ID=mRNA_H-paniculata_contig40011.10376.1|Name=mRNA_H-paniculata_contig40011.10376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig40011:1008..1399+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |