mRNA_H-paniculata_contig39910.10339.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39910.10339.1
Unique NamemRNA_H-paniculata_contig39910.10339.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 112 bits (280), Expect = 1.140e-25
Identity = 58/166 (34.94%), Postives = 90/166 (54.22%), Query Frame = 1
Query:    1 WQRAEEAELQDLIDKGVWTQVKSPKNKLVVSAMVIYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE*AYLQAPIDQGSFVEIPVKYREVLGAVGRLDKAIYGFLQPGRYWSMKVTTDLTTKGFEQSQADPCVF 498
            WQ A E E   L+  G W   +  + + +V +  ++ +K  E GKV + K RLVA G  QI    +    SP     +    ++L+ I+DW++R +DI+ AYL   +++  F+E P  + +  G V RL   +YG  Q GR W+ K+   LTT GF ++ ADPCV+
Sbjct:  870 WQSAMEEEYGQLMQMGTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVY 1035          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A1Y1M2G6_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1M2G6_PHOPY)

HSP 1 Score: 109 bits (273), Expect = 9.960e-25
Identity = 54/169 (31.95%), Postives = 99/169 (58.58%), Query Frame = 1
Query:    1 WQRAEEAELQDLIDKGVWTQVKSPKNKLVVSAMVIYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE*AYLQAPIDQGSFVEIPVKYREVLGA---VGRLDKAIYGFLQPGRYWSMKVTTDLTTKGFEQSQADPCVF 498
            W  A + E ++LI    W  V+ P++  ++ +M I+KRK  + G++ + K RLVA GN Q K   ++K+ SP     +  ++L+++  ++W++ H+D+  AYL A +D+ +++EIP  + E L     V  L K++YG  Q G  W+ ++   L   G ++S+ DPC++
Sbjct:  859 WHEAIQEEYENLISNDTWNIVERPRDAKILRSMWIFKRKYDDCGRIMKYKARLVALGNHQTKYVDYEKSFSPVIMRKTMRILLAISVRKNWEINHIDVNCAYLNARLDEETYMEIPDGFDENLNKKKYVCELKKSLYGLHQSGYLWNQEINEFLKKMGMQRSRMDPCLY 1027          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A507DAW5_9FUNG (DNA-directed DNA polymerase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507DAW5_9FUNG)

HSP 1 Score: 106 bits (265), Expect = 1.140e-23
Identity = 57/166 (34.34%), Postives = 92/166 (55.42%), Query Frame = 1
Query:    1 WQRAEEAELQDLIDKGVWTQVKSPKNKLVVSAMVIYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE*AYLQAPIDQGSFVEIPVKYREVLGAVGRLDKAIYGFLQPGRYWSMKVTTDLTTKGFEQSQADPCVF 498
            W +AE+AEL  L +   ++   +P +  ++ +  +YK K+  DG V+R K RLVA G  Q     + +  SP   +A+   +L+L  +  W  R +DI  AYL   ++   +++ P  + +  G V +L K +YG  Q GR W +K+ T L ++G+ QS ADPCVF
Sbjct:  473 WIKAEQAELTALQESQTYSYAFAPDSANIIGSKWVYKIKLNADGSVKRFKARLVAQGYTQRFGFDYAETHSPVMRSATFRWLLALTALNRWSTRMLDISSAYLYGDLEDPVYMKQPPGHDDGSGRVYKLKKGLYGLKQAGRIWYIKLVTHLKSRGYVQSNADPCVF 638          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A6A3A122_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A122_HIBSY)

HSP 1 Score: 104 bits (259), Expect = 7.560e-23
Identity = 59/170 (34.71%), Postives = 88/170 (51.76%), Query Frame = 1
Query:    1 WQRAEEAELQDLIDKGVWTQVKSPKNKLVVSAMVIYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE*AYLQAPIDQGSFVEIPVKYREVLG----AVGRLDKAIYGFLQPGRYWSMKVTTDLTTKGFEQSQADPCVF 498
            W+ A ++E   L+    W+ VK P  ++ V    ++K K   DG V R K RL+A G  Q+    F    SP    ++  +VL+LA   DW+LRHVD+  A+L   +D   F+E P  + +V       V +L +A+YG  Q  R W  K+  +L   GF  S+ADP +F
Sbjct:  916 WKEAVQSEYDALLKNNTWSLVKLPAGRIPVGCKWLFKLKRNPDGSVNRYKARLIAKGYSQVTSYDFTDMFSPVLKFSTFNVVLALAVSNDWELRHVDVNNAFLNGDLDDVVFMEQPPGFEQVADDGTPLVCKLQRALYGLRQAPRNWHAKLRANLVQIGFVASRADPSLF 1085          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A4Y1RWQ7_PRUDU (Integrase catalytic domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RWQ7_PRUDU)

HSP 1 Score: 102 bits (253), Expect = 4.720e-22
Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = 1
Query:    1 WQRAEEAELQDLIDKGVWTQVKSPKNKLVVSAMVIYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE*AYLQAPIDQGSFVEIPVKYREVLGA--VGRLDKAIYGFLQPGRYWSMKVTTDLTTKGFEQSQADPCVF 498
            W++A + E++ L  +G W+   +P NK +V +  +YK K   DG V R K RLVA G  Q     F +  SP     +  +VLSLA +  W LR +D++ A+L   +++  F+  P  Y +      V +L K++YG  Q  R W+ K T  L   GF+ SQ+DP +F
Sbjct:  441 WRQAMQEEIEALQSQGTWSLEPNPGNKNIVGSKWLYKIKKNSDGSVARYKARLVAQGFSQQPGLDFGETFSPVVRHTTVRLVLSLAAMNQWSLRQLDVKNAFLHGDLEEEVFMRQPQGYEDPAHPEYVCKLKKSLYGLKQAPRAWNAKFTGYLPALGFKISQSDPSLF 608          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A4Y1RLH4_PRUDU (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RLH4_PRUDU)

HSP 1 Score: 99.4 bits (246), Expect = 4.090e-21
Identity = 58/168 (34.52%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    1 WQRAEEAELQDLIDKGVWTQVKSPKNKLVVSAMVIYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE*AYLQAPIDQGSFVEIPVKYREVLGA--VGRLDKAIYGFLQPGRYWSMKVTTDLTTKGFEQSQADPCVF 498
            W +A E E+  L  +G W  V  P N  +V +  IYK K   DG V R K RLVA G  Q     + +  SP     +  ++LSLA I  W LR +D++ A+L   +D+  +++ P  + +      V +L K++YG  Q  R W+ K T  L + GF+ S +DP +F
Sbjct:  557 WIKAMEEEISALTMQGTWCLVPRPANTNIVGSKWIYKIKRNSDGTVSRYKARLVAQGFSQEAGFDYDETFSPVVRHTTVRLILSLASINGWSLRQLDVKNAFLHGDLDEEVYMKQPQGFEDSSHPEYVCKLQKSLYGLKQAPRAWNAKFTGYLPSLGFKMSHSDPSLF 724          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID)

HSP 1 Score: 97.8 bits (242), Expect = 1.440e-20
Identity = 53/168 (31.55%), Postives = 88/168 (52.38%), Query Frame = 1
Query:    1 WQRAEEAELQDLIDKGVWTQVKSPKNKLVVSAMVIYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE*AYLQAPIDQGSFVEIPVKY--REVLGAVGRLDKAIYGFLQPGRYWSMKVTTDLTTKGFEQSQADPCVF 498
            W+ A + E   LI+   W  V+ P +K +V +  ++K K G DGK++RCK RLVA G  Q     +    +P     S   VL++    D +L  +D++ A+L   +++  F++ P  +  R+      +L K+IYG  Q  R W+ K+   L   GF ++ ADPC++
Sbjct:  791 WKDAIQNEYDSLIENETWKLVEMPPDKNLVGSKWVFKHKRGADGKIQRCKARLVAQGYSQKSGIDYNDVFAPVAKYNSIRSVLAITNELDLELHQMDVKTAFLNGDLEEDIFMKQPEGFINRDNPNMACKLQKSIYGLKQSARCWNEKMDEFLKESGFTRNDADPCIY 958          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A6A3BR49_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BR49_HIBSY)

HSP 1 Score: 97.4 bits (241), Expect = 1.920e-20
Identity = 60/170 (35.29%), Postives = 86/170 (50.59%), Query Frame = 1
Query:    1 WQRAEEAELQDLIDKGVWTQVKSPKNKLVVSAMVIYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE*AYLQAPIDQGSFVEIPVKYREVLG----AVGRLDKAIYGFLQPGRYWSMKVTTDLTTKGFEQSQADPCVF 498
            W+ A  AE + L   G WT VK P+ + VV    ++K K    G + R K RLVA G  Q+    F +  SP     +  +VLSLA   DW LR VD+  A++   + +  F++ P  + +V       V RL+KA+YG  Q  R W  K+   L   GF++S AD  +F
Sbjct:  573 WKAAVLAEFEALRKNGTWTLVKLPEGRSVVGYKWLFKLKKNPYGSINRYKARLVAKGYSQMPGYDFGETFSPVVRFTTLNIVLSLAVTNDWQLRQVDVNNAFMYGDLHEEVFMQQPPSFEQVAADGSPLVCRLEKAMYGLRQAPRNWHDKLKNYLLKIGFKESSADTSLF 742          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A151T234_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T234_CAJCA)

HSP 1 Score: 96.3 bits (238), Expect = 4.680e-20
Identity = 53/166 (31.93%), Postives = 84/166 (50.60%), Query Frame = 1
Query:    1 WQRAEEAELQDLIDKGVWTQVKSPKNKLVVSAMVIYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE*AYLQAPIDQGSFVEIPVKYREVLGAVGRLDKAIYGFLQPGRYWSMKVTTDLTTKGFEQSQADPCVF 498
            W +A + EL  L     WT    P +K+ +    +YK K   DG +ER K RLV+ G  Q++D  F    SP     +  M+L+LA I +W L+ +D+  A+L   + +  ++ +P       G V  L +++YG  Q  R W  K+++ L   G+  SQAD  +F
Sbjct:  597 WVKAMKDELAALKMNNTWTLTNLPPDKVPIGCRWVYKVKHNADGTIERYKARLVSKGYNQLEDLDFLDTFSPVAKITTFRMLLALASINNWYLKQLDVNNAFLHGELHEEVYMHVPPGLTAQPGQVCLLKRSLYGLKQASRQWYAKLSSFLLLHGYHHSQADHSLF 762          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A6A3AWP1_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AWP1_HIBSY)

HSP 1 Score: 95.9 bits (237), Expect = 6.850e-20
Identity = 56/170 (32.94%), Postives = 87/170 (51.18%), Query Frame = 1
Query:    1 WQRAEEAELQDLIDKGVWTQVKSPKNKLVVSAMVIYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE*AYLQAPIDQGSFVEIPVKYREV----LGAVGRLDKAIYGFLQPGRYWSMKVTTDLTTKGFEQSQADPCVF 498
            W  A   E + L + G WT V+ PK+++VV    +++ K   DG V R K RLVA G  Q+    F+   SP    ++   VL++A    W++RH+DI  A+L   + +  F++ P  + +        V +L KA+YG  Q  R W  K+  +L   GF  S+AD  +F
Sbjct: 1031 WAAAVHEEYKALTNNGTWTLVRLPKDRMVVGCKWLFRVKRNPDGSVNRYKARLVAKGFSQVPGQDFKDTFSPVVRFSTFNTVLAVAVSNGWEIRHIDINNAFLNGDLSEEVFMQQPPGFEQEDECNRPLVCKLKKALYGLRQAPRNWHAKLKENLMQMGFVVSRADSSLF 1200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C3AKI0_9AGAM1.140e-2534.94Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A1Y1M2G6_PHOPY9.960e-2531.95Uncharacterized protein n=1 Tax=Photinus pyralis T... [more]
A0A507DAW5_9FUNG1.140e-2334.34DNA-directed DNA polymerase n=1 Tax=Chytriomyces c... [more]
A0A6A3A122_HIBSY7.560e-2334.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1RWQ7_PRUDU4.720e-2235.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1RLH4_PRUDU4.090e-2134.52Integrase catalytic domain-containing protein (Fra... [more]
A0A7M6DPI8_9CNID1.440e-2031.55Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A6A3BR49_HIBSY1.920e-2035.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A151T234_CAJCA4.680e-2031.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3AWP1_HIBSY6.850e-2032.94Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39910contigH-paniculata_contig39910:5..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39910.10339.1prot_H-paniculata_contig39910.10339.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39910 203..406 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930220.5411837-UTR-H-paniculata_contig39910:4..2021622930220.5411837-UTR-H-paniculata_contig39910:4..202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39910 5..202 -
1691481196.9080327-UTR-H-paniculata_contig39910:4..2021691481196.9080327-UTR-H-paniculata_contig39910:4..202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39910 5..202 -
1622930220.566332-UTR-H-paniculata_contig39910:406..5021622930220.566332-UTR-H-paniculata_contig39910:406..502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39910 407..502 -
1691481196.9301386-UTR-H-paniculata_contig39910:406..5021691481196.9301386-UTR-H-paniculata_contig39910:406..502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39910 407..502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930220.5535781-CDS-H-paniculata_contig39910:202..4061622930220.5535781-CDS-H-paniculata_contig39910:202..406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39910 203..406 -
1691481196.9211528-CDS-H-paniculata_contig39910:202..4061691481196.9211528-CDS-H-paniculata_contig39910:202..406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39910 203..406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39910.10339.1

>prot_H-paniculata_contig39910.10339.1 ID=prot_H-paniculata_contig39910.10339.1|Name=mRNA_H-paniculata_contig39910.10339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MVIYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMV
LSLAEIQDWDLRHVDIE*
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mRNA from alignment at H-paniculata_contig39910:5..502-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39910.10339.1 ID=mRNA_H-paniculata_contig39910.10339.1|Name=mRNA_H-paniculata_contig39910.10339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=498bp|location=Sequence derived from alignment at H-paniculata_contig39910:5..502- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCAAAGAGCGGAGGAAGCCGAGTTGCAAGACCTCATCGACAAGGGGGT TTGGACGCAAGTGAAGAGCCCGAAGAACAAGCTGGTCGTGAGCGCGATGG TGATCTACAAAAGGAAAATCGGCGAGGACGGAAAAGTGGAGAGATGTAAG TGCCGCCTGGTCGCCCACGGGAACCGTCAGATCAAGGACACCCACTTCCA GAAAGCTTCGTCCCCTGCACCCGCAGCGGCCAGCACAATAATGGTGTTGT CGCTTGCGGAAATCCAGGACTGGGACCTAAGGCACGTCGATATTGAATAA GCGTACCTGCAGGCGCCCATCGACCAGGGGAGTTTCGTCGAAATTCCCGT AAAATACCGGGAGGTCCTAGGAGCGGTGGGGCGCCTCGACAAGGCAATCT ACGGATTTTTGCAACCCGGCAGATACTGGAGTATGAAGGTTACCACAGAC CTCACGACGAAAGGGTTCGAGCAATCGCAAGCCGACCCGTGTGTGTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig39910:5..502-

>mRNA_H-paniculata_contig39910.10339.1 ID=mRNA_H-paniculata_contig39910.10339.1|Name=mRNA_H-paniculata_contig39910.10339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig39910:5..502- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGATCTACAAAAGGAAAATCGGCGAGGACGGAAAAGTGGAGAGATG
TAAGTGCCGCCTGGTCGCCCACGGGAACCGTCAGATCAAGGACACCCACT
TCCAGAAAGCTTCGTCCCCTGCACCCGCAGCGGCCAGCACAATAATGGTG
TTGTCGCTTGCGGAAATCCAGGACTGGGACCTAAGGCACGTCGATATTGA
ATAAATGGTGATCTACAAAAGGAAAATCGGCGAGGACGGAAAAGTGGAGA
GATGTAAGTGCCGCCTGGTCGCCCACGGGAACCGTCAGATCAAGGACACC
CACTTCCAGAAAGCTTCGTCCCCTGCACCCGCAGCGGCCAGCACAATAAT
GGTGTTGTCGCTTGCGGAAATCCAGGACTGGGACCTAAGGCACGTCGATA
TTGAATAA
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