prot_H-paniculata_contig39910.10339.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig39910.10339.1
Unique Nameprot_H-paniculata_contig39910.10339.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length68
Homology
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: UPI000B8AF143 (uncharacterized protein LOC110794847 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF143)

HSP 1 Score: 54.7 bits (130), Expect = 4.630e-8
Identity = 23/64 (35.94%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    3 IYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDI 66
            +YK  + +DG +ER K RLVA G+RQ+K+ +++   SP    ++  M+++LA +++W +  +DI
Sbjct:   31 VYKVNLNKDGFLERLKARLVARGDRQMKEKYYKHTFSPVANFSTVRMLVALATLRNWKVHQLDI 94          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A5K0XK81_9MAGN (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0XK81_9MAGN)

HSP 1 Score: 57.0 bits (136), Expect = 7.700e-8
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 0
Query:    3 IYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE 67
            +YK K+  DG ++R K RLVA G  QI+   F +  SP    A+  +VLS+A +  W L+H+D++
Sbjct:  331 VYKTKLNSDGHIDRLKARLVAQGYTQIEGVDFLETFSPVVKPATIRIVLSVALMNGWPLKHLDVK 395          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 53.9 bits (128), Expect = 3.510e-7
Identity = 27/65 (41.54%), Postives = 37/65 (56.92%), Query Frame = 0
Query:    3 IYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE 67
            +YK K  +DGKV R K RLVA G  Q     + +  SP     +  +VLSLA +  WDLR +D++
Sbjct:   99 VYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDLRQLDVK 163          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A5N6PPX5_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PPX5_9ASTR)

HSP 1 Score: 50.8 bits (120), Expect = 1.190e-5
Identity = 23/64 (35.94%), Postives = 36/64 (56.25%), Query Frame = 0
Query:    3 IYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDI 66
            +++ K   DG ++R K RLVA G  Q+    +    SP   A +  +VLSLA + +W LR +D+
Sbjct:  942 LFRTKFRADGSIDRYKARLVAQGYSQVPGLDYSHTFSPVVKATTVRVVLSLAVVNNWKLRQLDV 1005          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A2Z7BF72_9LAMI (Integrase catalytic domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BF72_9LAMI)

HSP 1 Score: 50.4 bits (119), Expect = 1.630e-5
Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 0
Query:    3 IYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE 67
            + K K+  DG ++R K RLVA G  QI    +    SP    ++  +VLS+A +Q WD+R +D++
Sbjct:  953 VLKPKLKPDGTLDRLKARLVAKGYHQIDGLDYTDTFSPVIKPSTIRLVLSVALVQKWDIRQLDVK 1017          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: UPI000CED7874 (uncharacterized protein LOC112098012 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CED7874)

HSP 1 Score: 48.5 bits (114), Expect = 2.840e-5
Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 0
Query:    3 IYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDI 66
            +Y+ K   DG V + K RLVA G +QI   +  +  SP    A+  ++LSLA +  W +R VD+
Sbjct:   70 VYRAKYNTDGSVAKYKARLVAKGFQQIMGVNCFETFSPVIKPATVRVILSLAVMNQWKIRQVDV 133          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: UPI000CECECC0 (uncharacterized protein LOC112098991 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CECECC0)

HSP 1 Score: 49.7 bits (117), Expect = 2.960e-5
Identity = 22/64 (34.38%), Postives = 39/64 (60.94%), Query Frame = 0
Query:    4 YKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE 67
            YK K+ E+GKV++CK RLVA G +Q  +   ++  +P     +  +V+S+A    W + H+D++
Sbjct:   29 YKTKLKENGKVDKCKARLVAKGYKQEYNVDCKEGFAPITRHDTIRLVISIAAQNSWPILHLDVK 92          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A438EUH4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EUH4_VITVI)

HSP 1 Score: 49.3 bits (116), Expect = 4.150e-5
Identity = 22/65 (33.85%), Postives = 38/65 (58.46%), Query Frame = 0
Query:    3 IYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE 67
            ++K K+ E+GKV++CK RLVA G  Q     + +  +P     + IMV++LA    W +  +D++
Sbjct:  479 VFKTKLNENGKVDKCKARLVAKGYAQQHGIDYTEVFAPVARWDTIIMVIALAARNGWSVYQLDVK 543          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: A0A4Y1RLH4_PRUDU (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RLH4_PRUDU)

HSP 1 Score: 49.3 bits (116), Expect = 4.160e-5
Identity = 26/65 (40.00%), Postives = 34/65 (52.31%), Query Frame = 0
Query:    3 IYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDIE 67
            IYK K   DG V R K RLVA G  Q     + +  SP     +  ++LSLA I  W LR +D++
Sbjct:  591 IYKIKRNSDGTVSRYKARLVAQGFSQEAGFDYDETFSPVVRHTTVRLILSLASINGWSLRQLDVK 655          
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Match: UPI000B903DB4 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B903DB4)

HSP 1 Score: 48.1 bits (113), Expect = 4.680e-5
Identity = 24/64 (37.50%), Postives = 35/64 (54.69%), Query Frame = 0
Query:    3 IYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMVLSLAEIQDWDLRHVDI 66
            IY+ K   +G ++  K RLVA G  QI    F    SP   +++  ++LSLA I  W LR +D+
Sbjct:   82 IYRIKYKSNGSIDPYKARLVAQGFTQIPGLDFSHTFSPVVTSSTIRVILSLATINKWSLRQLDV 145          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39910.10339.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
UPI000B8AF1434.630e-835.94uncharacterized protein LOC110794847 n=1 Tax=Spina... [more]
A0A5K0XK81_9MAGN7.700e-840.00Integrase catalytic domain-containing protein (Fra... [more]
A0A540NMU0_MALBA3.510e-741.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6PPX5_9ASTR1.190e-535.94Integrase catalytic domain-containing protein n=2 ... [more]
A0A2Z7BF72_9LAMI1.630e-536.92Integrase catalytic domain-containing protein n=1 ... [more]
UPI000CED78742.840e-537.50uncharacterized protein LOC112098012 n=1 Tax=Citru... [more]
UPI000CECECC02.960e-534.38uncharacterized protein LOC112098991 n=1 Tax=Citru... [more]
A0A438EUH4_VITVI4.150e-533.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1RLH4_PRUDU4.160e-540.00Integrase catalytic domain-containing protein (Fra... [more]
UPI000B903DB44.680e-537.50uncharacterized mitochondrial protein AtMg00820-li... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..67
e-value: 8.8E-8
score: 32.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39910contigH-paniculata_contig39910:203..406 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39910.10339.1mRNA_H-paniculata_contig39910.10339.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig39910 5..502 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig39910.10339.1 ID=prot_H-paniculata_contig39910.10339.1|Name=mRNA_H-paniculata_contig39910.10339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MVIYKRKIGEDGKVERCKCRLVAHGNRQIKDTHFQKASSPAPAAASTIMV
LSLAEIQDWDLRHVDIE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2