mRNA_H-paniculata_contig33938.9063.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33938.9063.1
Unique NamemRNA_H-paniculata_contig33938.9063.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A6B7EVT1_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVT1_9PHAE)

HSP 1 Score: 1186 bits (3067), Expect = 0.000e+0
Identity = 590/618 (95.47%), Postives = 601/618 (97.25%), Query Frame = 1
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILNKSEVK 1854
            MKNLKQKFDYVKINLASPERI EWAEKVLPNGE VGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWEC+CGLHK+KKKDVFFCEVCGVE+TESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLA PINELEA+IYNGKEPDQDEDV KYE+ FLSSFYDTEGEGFHYGKK QGAEILYHRL+ +DLK EIEKNRN MFFETAKK VEAAIKKIRIFENFLTTNTRPEWMVLY LPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVC SFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTT NRKNLRGSNNYFANFNEVISAY+QKQLQLHSA+WVRCPND+NLD+PLKFI KI LSKTT LVIYNNLQRKETI GELLVQYLRTTPGRIIFNQCVNDILNKSEVK
Sbjct:    1 MKNLKQKFDYVKINLASPERIQEWAEKVLPNGERVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECSCGLHKFKKKDVFFCEVCGVEVTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPINELEAVIYNGKEPDQDEDVAKYEEVFLSSFYDTEGEGFHYGKKRQGAEILYHRLKNLDLKVEIEKNRNIMFFETAKKKVEAAIKKIRIFENFLTTNTRPEWMVLYFLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTRNRKNLRGSNNYFANFNEVISAYKQKQLQLHSAIWVRCPNDINLDNPLKFIKKINLSKTTQLVIYNNLQRKETIDGELLVQYLRTTPGRIIFNQCVNDILNKSEVK 618          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: D1J788_ECTSI (DNA-directed RNA polymerase subunit beta' n=8 Tax=Ectocarpales TaxID=2877 RepID=D1J788_ECTSI)

HSP 1 Score: 1134 bits (2934), Expect = 0.000e+0
Identity = 560/618 (90.61%), Postives = 586/618 (94.82%), Query Frame = 1
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILNKSEVK 1854
            MKNLKQKFDYVKINLASPERI EWAEK LPNGEIVGEVT+PETINYRTHKPEKGGLFCEKIFGPVKNWEC CGLHKYK+K+VFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLA PI++LEA+IYNGK+PDQDED+ KYEQ FLSSFYDTEGEGFHYGKK QGAEILYHRL+KIDLK EIE NRN MFF   KK VE AIKKIRIFENFLTT TRPEWMVL+ +PVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVV+ TEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP LKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIY NEPFIWYLTEEIL+KHPIILNRAPTLHRLGVQAFDPVL+RGR+IQLHPLVC SFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLS SSGEPTIQPSQDMVLGFYYLTT NR NL GSNNYF++FNEVISAY+QKQ+Q+HS++WVRCPN++NLDSPLKFI KI LS    L IYNNLQRKET+GGELLVQ+LRTTPGRIIFNQCVNDILNKSEVK
Sbjct:    1 MKNLKQKFDYVKINLASPERIKEWAEKTLPNGEIVGEVTQPETINYRTHKPEKGGLFCEKIFGPVKNWECTCGLHKYKEKNVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPISKLEAVIYNGKKPDQDEDLAKYEQVFLSSFYDTEGEGFHYGKKRQGAEILYHRLKKIDLKTEIEINRNVMFFSEVKKKVEVAIKKIRIFENFLTTGTRPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVISAYQQKQVQIHSSIWVRCPNEINLDSPLKFIKKINLSNNNTLTIYNNLQRKETMGGELLVQFLRTTPGRIIFNQCVNDILNKSEVK 618          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A0R6MFT6_UNDPI (DNA-directed RNA polymerase subunit beta' n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6MFT6_UNDPI)

HSP 1 Score: 1043 bits (2698), Expect = 0.000e+0
Identity = 514/614 (83.71%), Postives = 555/614 (90.39%), Query Frame = 1
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILNK 1842
            MKN+KQ+F+YVKINLASPERI EWAEK+LPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKN EC CG +K+K+ D   CE+CGVELTESRVRRHRMGYI LLSPVVHIWYLKGSPS LS +L   I +LE ++YNGKEP+QD+DV KY+ FF    YDTEGEGF YGKK QGAEILY RL++IDLK EI  NRN MF     K VE AIK+IRIFENFLTTNTRPEWMVL+ LPVLPPGIRP+VKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVI TEKRMIQEAVDTLIDNGKRGSK+LDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFLPFIIY+LLSQGLSHSIK+AKKIIY N+ FIWYLTEEIL+KHPIILNRAPTLHRLGVQAFDPVL+RGRAIQLHPLVCP+FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQPSQDMVLGFYYLT  NR  L+GSNNYF+NFNEVI+AYEQKQLQLHS++WVRCP D+ LD+ LKF+  I L     L IYNNLQRKET  G+LLVQY+RTTPGRIIFNQC+N+ILNK
Sbjct:    1 MKNMKQQFEYVKINLASPERIKEWAEKILPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNCECTCGRYKHKEPDTLICEICGVELTESRVRRHRMGYINLLSPVVHIWYLKGSPSFLSTILDSSITKLEGVVYNGKEPEQDQDVSKYDDFF----YDTEGEGFVYGKKRQGAEILYDRLKRIDLKVEIASNRNIMFCSNVTKAVEDAIKRIRIFENFLTTNTRPEWMVLHFLPVLPPGIRPMVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVILTEKRMIQEAVDTLIDNGKRGSKVLDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFIIYKLLSQGLSHSIKKAKKIIYSNQSFIWYLTEEILRKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRMGLKGSNNYFSNFNEVITAYEQKQLQLHSSIWVRCPKDITLDTELKFLKTIVLDNLQTLHIYNNLQRKETKDGQLLVQYIRTTPGRIIFNQCINNILNK 610          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A8F0F9J3_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9J3_9PHAE)

HSP 1 Score: 1011 bits (2615), Expect = 0.000e+0
Identity = 501/614 (81.60%), Postives = 544/614 (88.60%), Query Frame = 1
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILNK 1842
            MKN+KQ+F+YVKINLASP+ I EWAEK LPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWEC CG +K +   +  CE CGVELTESRVRRHRMGYI LLSPVVHIWYLKGSPSLLSA+L   I  LE++IYNGKEP QD+D+ KY  FF    YD   EGF + KK QGAEILY  L+KI+LK EIE NRN M    A K +E AIK++RIFENFLTTNTRPEW +L+ LPVLPPGIRP+VKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAP+VVI TEKRMIQEAVDTLIDNGKRGSK+LDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFLPF+IY+LLSQ LSHSIKRAKKIIY N PFIW+LTEEIL+KHPIILNRAPTLHRLGVQAFDP+L+RGRAIQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQPSQDMVLGFYYLT  NR  L+G+NNYF++FNEVISAYEQKQLQ+HS++WVRCP D+ LD  LKF+  I LS    L IYNNLQRKET  GELLVQY+RTTPGRIIFN+CVNDILNK
Sbjct:    1 MKNMKQQFEYVKINLASPDCIKEWAEKTLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECTCGRYKQRDLSIVVCETCGVELTESRVRRHRMGYINLLSPVVHIWYLKGSPSLLSAILYSSITRLESVIYNGKEPGQDQDISKYTDFF----YDAMDEGFVFSKKSQGAEILYDSLKKINLKEEIEDNRNIMLCSKAVKKIEDAIKRVRIFENFLTTNTRPEWTILHFLPVLPPGIRPMVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPNVVILTEKRMIQEAVDTLIDNGKRGSKVLDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFLIYKLLSQELSHSIKRAKKIIYSNRPFIWHLTEEILRKHPIILNRAPTLHRLGVQAFDPILVRGRAIQLHPLVCAAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRMQLKGANNYFSDFNEVISAYEQKQLQVHSSIWVRCPTDITLDIQLKFLKTIVLSNNENLHIYNNLQRKETKTGELLVQYIRTTPGRIIFNECVNDILNK 610          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: D1GJH3_FUCVE (DNA-directed RNA polymerase subunit beta' n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJH3_FUCVE)

HSP 1 Score: 993 bits (2566), Expect = 0.000e+0
Identity = 483/615 (78.54%), Postives = 548/615 (89.11%), Query Frame = 1
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRC--PNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILN 1839
            MKN+K++F+Y++INLASP+RI EW+EK+LP GEI+GEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACG +K+K +++  CE+CGVELTESRVRRHRMGYIKLL+PVVHIWYLKGSPS LS +L   I+++EAI+Y+GKEP+++ ++ KYE FF    Y+ +G GF YGKK QG EILY +L++IDLK EIE NRN MF     K VEAAIK+IRIFENFLTTNTRPEWM+L  LPVLPPGIRP+V+LDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPS+VI TEKRMIQE+VDTLIDNGKRGSK++D N+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP+L LNQCGLPYEMAIELFLPFIIYRLLSQGL HSIK+AKKIIY N+ FIWYLT+EIL KHPIILNRAPTLHRLGVQAFDP+L+ GRAIQLHPLVCP+FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQPSQDMVLGFYYLT  NR  L+G+NNYF+NF+EV+SAY+QKQLQ+HS +WVRC   N + LD+ LKF   I L     + +YNNLQRKET  G+LLVQY+RTTPGRIIFNQC+NDILN
Sbjct:    1 MKNVKEQFEYLRINLASPKRIKEWSEKILPTGEIIGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGRYKHKDEEIAICEICGVELTESRVRRHRMGYIKLLTPVVHIWYLKGSPSFLSIVLDSSISQIEAIVYSGKEPEKEHNILKYEDFF----YENQGPGFVYGKKPQGTEILYDKLKRIDLKVEIEINRNIMFCSNVTKVVEAAIKRIRIFENFLTTNTRPEWMILNFLPVLPPGIRPMVQLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSIVIMTEKRMIQESVDTLIDNGKRGSKVVDTNRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPELHLNQCGLPYEMAIELFLPFIIYRLLSQGLCHSIKKAKKIIYSNQSFIWYLTKEILSKHPIILNRAPTLHRLGVQAFDPILVNGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRIGLKGTNNYFSNFHEVLSAYQQKQLQIHSTIWVRCFNSNQIFLDNELKFCKTIALGNDINIHVYNNLQRKETSQGKLLVQYIRTTPGRIIFNQCLNDILN 611          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A141BSD2_9PHAE (DNA-directed RNA polymerase subunit beta' n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSD2_9PHAE)

HSP 1 Score: 985 bits (2547), Expect = 0.000e+0
Identity = 478/613 (77.98%), Postives = 550/613 (89.72%), Query Frame = 1
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILN 1839
            MK ++++F+Y++INLASP+RI EW++K LP GE++GEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACG +K++  ++  CE CGVELTESRVRRHRMGYIKLL+PVVHIWYLKG+PS L+++L  PI+ +E IIY+GKEP+QD++V KYE FF     + +  GF +GKK QGAEILY +L+ IDLK EIE NRN MF  T  K VEAAIK+IRIFENFL+TNTRPEWM+L  LPVLPPGIRP+VKL+NGRFATSDLNELYRKIIIRNKRLKRLLSVHAPS+VI TEKRMIQE+VDTLIDNGKRGSK++DAN+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP+L+LNQCGLPYEMAIELFLPFIIY+LLSQGL HSIK+AKKII+ N+PFIWYLT+EIL KHPIILNRAPTLHRLGVQAFDPVL++GRAIQLHPLVCP+FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSP++GEP IQPSQDM+LGFYYLTTHNR  L+G+NNYF++F+EV+SAY+ KQL++HS +WVRC N++ LDS LKFI  I  +    L IYNNLQRKET  G+ LVQY+RTTPGRIIFNQC+NDILN
Sbjct:    1 MKTIEEQFEYIRINLASPQRIKEWSQKTLPTGEVIGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGRYKHRDDEISICETCGVELTESRVRRHRMGYIKLLTPVVHIWYLKGAPSFLASILDSPISRIETIIYSGKEPEQDQEVLKYEDFFP----ENQLPGFVFGKKPQGAEILYDKLKNIDLKIEIETNRNIMFCSTVTKVVEAAIKRIRIFENFLSTNTRPEWMILQFLPVLPPGIRPMVKLENGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSIVIITEKRMIQESVDTLIDNGKRGSKVVDANRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPKLQLNQCGLPYEMAIELFLPFIIYKLLSQGLCHSIKKAKKIIHSNQPFIWYLTKEILSKHPIILNRAPTLHRLGVQAFDPVLVKGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPATGEPNIQPSQDMILGFYYLTTHNRLGLKGANNYFSSFHEVLSAYQHKQLKVHSPIWVRCSNELLLDSKLKFIKTIN-NNNNKLHIYNNLQRKETSEGKFLVQYIRTTPGRIIFNQCLNDILN 608          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A8F0JZT2_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZT2_9PHAE)

HSP 1 Score: 981 bits (2535), Expect = 0.000e+0
Identity = 484/614 (78.83%), Postives = 542/614 (88.27%), Query Frame = 1
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILNK 1842
            MK +KQ+F+YVKINLASPERI EW EK LPNG+IVGEV EPETINYRTHKPEK GLFCEKIFGPVKNWEC CG +K+K++D   CEVCGVE+TESRVRRHRMGYIKLL+PV+HIWYLKGSPS LSA+LA  +  +E ++Y G++P+       YE FF +       EGF YGKK +G EILY RL+KI+LK EIE NRN MF   A K VE AIK+IRI+ENFLTTNTRPEWM+L  LPVLPPG+RP+VKLD+GRFATSDLNELYRKII+RNKRL RLLSVHAP++VI+TEKRMIQEAVDTLIDNGKRGSK+LDAN+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFLPF+I++LL QGL++SIKRAKKIIY N  FIWYLTEE LKKHPIILNRAPTLHRLGVQAFDPVL+RGRAIQLHPLVCP+FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQP+QDMVLGFYYLT +NR  L+G+NNYF+NFNEV+ AYEQKQLQLHS+VWVR PN++ LD+PL ++  ITL     L IYNNLQRKET+ G+LLVQYLRTTPGRIIFNQCVNDILNK
Sbjct:    1 MKKVKQEFEYVKINLASPERIKEWGEKTLPNGKIVGEVIEPETINYRTHKPEKDGLFCEKIFGPVKNWECTCGRYKHKEEDTLICEVCGVEVTESRVRRHRMGYIKLLAPVLHIWYLKGSPSYLSAILASSVTNIEGLVY-GRDPE----FFDYEDFFFND------EGFVYGKKLEGTEILYDRLKKINLKTEIESNRNIMFCSNATKVVEDAIKRIRIYENFLTTNTRPEWMILNFLPVLPPGLRPMVKLDSGRFATSDLNELYRKIILRNKRLGRLLSVHAPNIVITTEKRMIQEAVDTLIDNGKRGSKVLDANRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLPFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMQLKGANNYFSNFNEVVIAYEQKQLQLHSSVWVRLPNNITLDTPLTYLKTITLKSNENLHIYNNLQRKETMDGKLLVQYLRTTPGRIIFNQCVNDILNK 603          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A8F0JYE1_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYE1_9PHAE)

HSP 1 Score: 890 bits (2299), Expect = 0.000e+0
Identity = 445/611 (72.83%), Postives = 509/611 (83.31%), Query Frame = 1
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDI 1833
            M   KQ F  VKINLASPERI  W+EK LP+GEI+GEV E ETINYRTHKPEKGGLFCEKIFGPVKNWECACG +K K K+   CEVC VE+ +SRVRRHRMGYI LL+PVVH+WYLKGSPS LSA+L  P+  +E ++Y GK    D    +YEQF  +       E F   K+ +GAEI+Y +L+KIDLK EIE NR  MF     K+ E AIK+IR+FENFLTTNT+PEWMVL  LPVLPPGIRP++++ NGRFATSDLNELYRKIIIRN RL RL+SVHAP+++I TEKRMIQE+VD LIDNGKRG K+LD++KRPLKSLADIIEGKQGRFR NLLGKR DYSGRSVIIVGPQL LNQCGLPYEMAIELFLPFII++LL QGL +SIK+AKKII+ N+ FIW+L +EIL +HPIILNRAPTLHRLGVQAFDPVL+RGRAIQLHPLVCP+FNADFDGDQMAVHIPLSFESQLETRLCLLA NNFLSP++GE  I PSQDMVLGFYYLTT NR  L+G+NNYF+NFNEVISAY+QKQL +HS++WVRC ++++L + LKF   I L     L IYNNLQRKET  G+ LVQYLRTTPGRI+FNQCVNDI
Sbjct:    1 MNKNKQDFVSVKINLASPERIKAWSEKELPSGEIIGEVLESETINYRTHKPEKGGLFCEKIFGPVKNWECACGRYKQKTKNDLICEVCSVEVIDSRVRRHRMGYISLLTPVVHVWYLKGSPSFLSAILESPVKTIEQVVY-GKTFGLD--FSRYEQFLFTE------EDFATEKRLEGAEIIYDQLQKIDLKTEIEMNREIMFCSNNVKSTEDAIKRIRLFENFLTTNTKPEWMVLNCLPVLPPGIRPMIQMANGRFATSDLNELYRKIIIRNNRLGRLISVHAPNMIIKTEKRMIQESVDALIDNGKRGEKVLDSHKRPLKSLADIIEGKQGRFRLNLLGKRTDYSGRSVIIVGPQLALNQCGLPYEMAIELFLPFIIHKLLFQGLVYSIKKAKKIIFSNDSFIWFLLKEILIQHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLATNNFLSPATGEANIHPSQDMVLGFYYLTTQNRMKLKGANNYFSNFNEVISAYQQKQLHVHSSIWVRCSDNIDLYTQLKFFKTIELQNGNRLHIYNNLQRKETKNGDFLVQYLRTTPGRILFNQCVNDI 602          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A8E6D698_9PHAE (DNA-directed RNA polymerase subunit beta' n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D698_9PHAE)

HSP 1 Score: 846 bits (2186), Expect = 1.070e-303
Identity = 419/621 (67.47%), Postives = 505/621 (81.32%), Query Frame = 1
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYN---------GKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDIL 1836
            +K +K++F+YVKINLASPE+I  W EK LP GE+VGEVTE ETINYRT+KPEKGGLFCEKIFGP+KNWEC CG +     D   CE CGVE+TES+VRRHRMGYI+LL PV HIWYLKGSPS LS +L   +  LE +IY           +E ++DE++   + FF              G + +G   LY+RL+KI+L+ EIEK+R  M    + K  E AIK+IRI ENFL+TNT+PEWM+LY LPV+PPG+RPI+KL+NGRFA+SDLNELYR+IIIRNKRL RL+SVHAPSVV++TE RMIQE++DTLIDNGKRG+ ++D++KRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFLPF++++L+ QGL++SI +AKKIIY N+ FIW L +EIL +HP+ILNRAPTLHRLGVQAFD +L+ GRAIQLHPLVCP+FNADFDGDQMAVHIPLSFESQ+ETRLCLLAPNNFLSP++G+P IQP+QDMVLGFYYLT  N  NL+GSN+YF +F EVI AY QKQL +HS++WVRCP ++ LD  L     +TL K + + IY +LQRKET  G LLVQYLRTTPGR+IFNQ VN++L
Sbjct:    3 IKKMKRQFEYVKINLASPEQIRGWGEKYLPTGEVVGEVTESETINYRTYKPEKGGLFCEKIFGPIKNWECGCGQYTQSFDDGIICENCGVEVTESKVRRHRMGYIRLLVPVAHIWYLKGSPSFLSIVLKQSVKTLEEMIYGKDLKEEGFLDEENEEDEEIINKKHFFS-------------GNQLEGINSLYNRLKKINLRDEIEKSREIMLCAKSAKPFEDAIKRIRILENFLSTNTKPEWMLLYFLPVIPPGLRPIIKLENGRFASSDLNELYRRIIIRNKRLGRLMSVHAPSVVLNTETRMIQESIDTLIDNGKRGATVVDSHKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFLMHKLIYQGLANSINKAKKIIYNNKSFIWGLLKEILGRHPVILNRAPTLHRLGVQAFDAILVTGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQIETRLCLLAPNNFLSPATGDPVIQPTQDMVLGFYYLTAQNHTNLKGSNHYFGSFEEVILAYSQKQLHIHSSIWVRCPVNIELDIKLDLPKIVTL-KDSRIKIYKDLQRKETHKGHLLVQYLRTTPGRVIFNQEVNNLL 609          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A2I4Q2A7_9PHAE (DNA-directed RNA polymerase subunit beta' n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A7_9PHAE)

HSP 1 Score: 831 bits (2146), Expect = 1.030e-297
Identity = 416/612 (67.97%), Postives = 492/612 (80.39%), Query Frame = 1
Query:   10 LKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDV-FFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQD-EDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILN 1839
            ++Q++  ++INLAS ERI +W+E  LPNGEIVGE+TE +TINYRTHKPE+ GLFC+KIFGP+K+WEC CGL+K +       CEVCGV +TESRVRRHRMGYI LL PVVHIWYL+G P+ LS +L  P+ +LE  IY GK   +D  + E++E+F L      EGE      + QGAEI+Y +L+++DLK EI+ NR  M    + K VE AIK++RIFENFL T T+PEWM+   LPVLPPG+RPIV+LDNGR ATSDLNE YRKI+IR +RL RLLSV APS++I TEKRMIQE+VD LIDNGKRG K+LD +KRPLKSLA++IEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL LNQCGLPYEMA+ELFLPF+I+++    L+ SIK AKKIIY N+ FIWYL +EIL KHPIILNRAPTLHRLGVQAFDPVL+ GRAIQLHPLVCP+FNADFDGDQMAVHIPLS ESQLETRLCLLA NNFLSP++GEP I PSQDMVLGFYYLTT NR  L+G+NNYF+ FNEVISAY+QK+L LHS++WVRCP  V L+  L  +    L     L IY N Q+KET  G+ L QYLRTTPGRIIFN+ +N+ILN
Sbjct:    1 MRQEYQCIQINLASSERIKKWSEITLPNGEIVGEITESDTINYRTHKPERNGLFCQKIFGPIKDWECICGLYKNEVTQAGLICEVCGVAITESRVRRHRMGYINLLHPVVHIWYLRGIPNFLSIILKAPLKKLEETIY-GKNLSRDLTNYEEFEEFIL------EGELLSAQNQLQGAEIIYKKLKRLDLKEEIKNNRLIMVSSKSTKAVEDAIKRVRIFENFLATKTKPEWMIFNVLPVLPPGLRPIVQLDNGRLATSDLNEFYRKILIRTQRLGRLLSVQAPSMIIFTEKRMIQESVDALIDNGKRGPKVLDIHKRPLKSLAEMIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLHLNQCGLPYEMAVELFLPFLIHKIFFLKLAGSIKTAKKIIYSNKSFIWYLLKEILNKHPIILNRAPTLHRLGVQAFDPVLVTGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLESQLETRLCLLATNNFLSPATGEPNILPSQDMVLGFYYLTTQNRIKLKGNNNYFSTFNEVISAYQQKKLHLHSSIWVRCPKTVKLEMELVLLKIHILPNKDKLYIYQNFQKKETFDGKFLTQYLRTTPGRIIFNRRINEILN 605          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EVT1_9PHAE0.000e+095.47DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
D1J788_ECTSI0.000e+090.61DNA-directed RNA polymerase subunit beta' n=8 Tax=... [more]
A0A0R6MFT6_UNDPI0.000e+083.71DNA-directed RNA polymerase subunit beta' n=25 Tax... [more]
A0A8F0F9J3_9PHAE0.000e+081.60DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
D1GJH3_FUCVE0.000e+078.54DNA-directed RNA polymerase subunit beta' n=3 Tax=... [more]
A0A141BSD2_9PHAE0.000e+077.98DNA-directed RNA polymerase subunit beta' n=14 Tax... [more]
A0A8F0JZT2_9PHAE0.000e+078.83DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A8F0JYE1_9PHAE0.000e+072.83DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A8E6D698_9PHAE1.070e-30367.47DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]
A0A2I4Q2A7_9PHAE1.030e-29767.97DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33938contigH-paniculata_contig33938:409..2265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1144.8
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D1J788
KEGG rclassRC02795
KEGG koko:K03046
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005736,GO:0005737,GO:0009507,GO:0009536,GO:0030880,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0055029,GO:0061695,GO:0070013,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGs2QPYA@2759,COG0086@1
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons1
Model size1857
Cds size1857
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930046.4547777-CDS-H-paniculata_contig33938:408..22651622930046.4547777-CDS-H-paniculata_contig33938:408..2265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33938 409..2265 +
1691481124.7030702-CDS-H-paniculata_contig33938:408..22651691481124.7030702-CDS-H-paniculata_contig33938:408..2265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33938 409..2265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33938.9063.1prot_H-paniculata_contig33938.9063.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33938 409..2265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33938.9063.1

>prot_H-paniculata_contig33938.9063.1 ID=prot_H-paniculata_contig33938.9063.1|Name=mRNA_H-paniculata_contig33938.9063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=619bp
MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHK
PEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRH
RMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDED
VEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRN
RMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIV
KLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAV
DTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRS
VIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYG
NEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLV
CPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPS
QDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRC
PNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPG
RIIFNQCVNDILNKSEVK*
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mRNA from alignment at H-paniculata_contig33938:409..2265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33938.9063.1 ID=mRNA_H-paniculata_contig33938.9063.1|Name=mRNA_H-paniculata_contig33938.9063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1857bp|location=Sequence derived from alignment at H-paniculata_contig33938:409..2265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAATTTAAAACAAAAATTTGATTATGTAAAAATCAATTTAGCCTC TCCTGAACGTATTCTAGAATGGGCAGAAAAAGTTTTACCTAATGGAGAAA TAGTAGGTGAAGTGACTGAACCAGAAACAATTAATTATCGGACTCATAAA CCTGAAAAAGGTGGGTTATTTTGTGAAAAAATATTTGGGCCTGTTAAAAA TTGGGAATGTGCTTGTGGTTTACATAAATATAAAAAAAAAGATGTTTTTT TTTGTGAAGTCTGTGGTGTTGAGTTAACAGAATCTCGAGTCCGTCGACAT CGAATGGGATATATTAAATTATTATCTCCAGTTGTTCATATTTGGTATTT AAAAGGATCACCAAGTCTTTTGTCAGCCATGTTAGCATTACCTATCAATG AACTAGAGGCTATTATCTATAATGGAAAAGAACCAGATCAAGATGAGGAT GTCGAAAAATATGAACAGTTTTTTCTCTCATCTTTTTATGATACTGAAGG CGAAGGTTTTCATTACGGAAAAAAACATCAAGGTGCTGAAATTCTATATC ATAGATTAGAAAAAATTGATTTAAAAGCAGAAATTGAAAAAAATCGAAAT AGAATGTTTTTTGAGACTGCTAAAAAAACTGTCGAAGCTGCGATTAAAAA AATTCGTATCTTTGAAAATTTCTTAACTACAAATACTAGACCAGAATGGA TGGTATTATATAATCTTCCAGTCCTTCCACCTGGGATTCGACCTATTGTG AAATTAGACAATGGTCGATTTGCTACTTCAGATTTAAATGAACTATATAG AAAAATTATTATTAGAAATAAGCGATTAAAACGTTTATTATCTGTTCATG CTCCCAGTGTTGTAATTTCAACTGAAAAACGTATGATTCAAGAAGCAGTT GATACACTTATTGATAATGGTAAACGCGGTTCTAAAATTTTAGATGCAAA TAAACGACCGTTAAAATCATTGGCTGATATTATTGAAGGTAAACAAGGTA GGTTTCGTCAAAATTTGTTAGGAAAGCGTGTAGATTATTCGGGCCGTTCA GTGATTATTGTAGGCCCTCAACTTAAACTAAATCAATGTGGTTTACCTTA TGAGATGGCTATTGAATTATTTTTACCGTTTATTATTTATAGACTACTTT CTCAAGGATTATCACACTCAATAAAAAGGGCTAAAAAAATTATTTATGGA AATGAACCTTTTATTTGGTATTTAACTGAAGAAATTTTGAAAAAACACCC TATCATTTTAAATCGTGCACCAACGTTACATCGTTTAGGAGTACAAGCTT TTGATCCGGTATTAATTAGAGGGCGTGCCATCCAATTACATCCTCTTGTT TGTCCATCTTTTAACGCAGATTTTGATGGTGATCAAATGGCAGTTCATAT TCCTTTGTCCTTTGAATCACAATTAGAGACAAGATTATGTTTATTAGCTC CTAATAATTTTTTATCACCTTCTAGTGGTGAACCAACTATTCAACCTTCA CAAGATATGGTGTTGGGATTTTATTATTTAACTACTCACAATAGAAAAAA TTTACGAGGTTCAAATAATTATTTTGCTAATTTTAATGAAGTAATATCTG CATATGAGCAAAAACAATTACAGCTTCATTCAGCCGTATGGGTCCGTTGT CCTAATGATGTTAATTTAGATAGCCCATTAAAGTTCATAAATAAAATAAC TTTATCAAAGACTACCTATCTAGTTATTTATAATAATTTACAACGAAAAG AAACAATAGGTGGTGAATTATTAGTTCAGTATCTACGTACAACCCCTGGC CGTATTATTTTCAATCAATGTGTTAACGATATATTAAATAAATCAGAGGT GAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig33938:409..2265+

>mRNA_H-paniculata_contig33938.9063.1 ID=mRNA_H-paniculata_contig33938.9063.1|Name=mRNA_H-paniculata_contig33938.9063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3714bp|location=Sequence derived from alignment at H-paniculata_contig33938:409..2265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAATTTAAAACAAAAATTTGATTATGTAAAAATCAATTTAGCCTC
TCCTGAACGTATTCTAGAATGGGCAGAAAAAGTTTTACCTAATGGAGAAA
TAGTAGGTGAAGTGACTGAACCAGAAACAATTAATTATCGGACTCATAAA
CCTGAAAAAGGTGGGTTATTTTGTGAAAAAATATTTGGGCCTGTTAAAAA
TTGGGAATGTGCTTGTGGTTTACATAAATATAAAAAAAAAGATGTTTTTT
TTTGTGAAGTCTGTGGTGTTGAGTTAACAGAATCTCGAGTCCGTCGACAT
CGAATGGGATATATTAAATTATTATCTCCAGTTGTTCATATTTGGTATTT
AAAAGGATCACCAAGTCTTTTGTCAGCCATGTTAGCATTACCTATCAATG
AACTAGAGGCTATTATCTATAATGGAAAAGAACCAGATCAAGATGAGGAT
GTCGAAAAATATGAACAGTTTTTTCTCTCATCTTTTTATGATACTGAAGG
CGAAGGTTTTCATTACGGAAAAAAACATCAAGGTGCTGAAATTCTATATC
ATAGATTAGAAAAAATTGATTTAAAAGCAGAAATTGAAAAAAATCGAAAT
AGAATGTTTTTTGAGACTGCTAAAAAAACTGTCGAAGCTGCGATTAAAAA
AATTCGTATCTTTGAAAATTTCTTAACTACAAATACTAGACCAGAATGGA
TGGTATTATATAATCTTCCAGTCCTTCCACCTGGGATTCGACCTATTGTG
AAATTAGACAATGGTCGATTTGCTACTTCAGATTTAAATGAACTATATAG
AAAAATTATTATTAGAAATAAGCGATTAAAACGTTTATTATCTGTTCATG
CTCCCAGTGTTGTAATTTCAACTGAAAAACGTATGATTCAAGAAGCAGTT
GATACACTTATTGATAATGGTAAACGCGGTTCTAAAATTTTAGATGCAAA
TAAACGACCGTTAAAATCATTGGCTGATATTATTGAAGGTAAACAAGGTA
GGTTTCGTCAAAATTTGTTAGGAAAGCGTGTAGATTATTCGGGCCGTTCA
GTGATTATTGTAGGCCCTCAACTTAAACTAAATCAATGTGGTTTACCTTA
TGAGATGGCTATTGAATTATTTTTACCGTTTATTATTTATAGACTACTTT
CTCAAGGATTATCACACTCAATAAAAAGGGCTAAAAAAATTATTTATGGA
AATGAACCTTTTATTTGGTATTTAACTGAAGAAATTTTGAAAAAACACCC
TATCATTTTAAATCGTGCACCAACGTTACATCGTTTAGGAGTACAAGCTT
TTGATCCGGTATTAATTAGAGGGCGTGCCATCCAATTACATCCTCTTGTT
TGTCCATCTTTTAACGCAGATTTTGATGGTGATCAAATGGCAGTTCATAT
TCCTTTGTCCTTTGAATCACAATTAGAGACAAGATTATGTTTATTAGCTC
CTAATAATTTTTTATCACCTTCTAGTGGTGAACCAACTATTCAACCTTCA
CAAGATATGGTGTTGGGATTTTATTATTTAACTACTCACAATAGAAAAAA
TTTACGAGGTTCAAATAATTATTTTGCTAATTTTAATGAAGTAATATCTG
CATATGAGCAAAAACAATTACAGCTTCATTCAGCCGTATGGGTCCGTTGT
CCTAATGATGTTAATTTAGATAGCCCATTAAAGTTCATAAATAAAATAAC
TTTATCAAAGACTACCTATCTAGTTATTTATAATAATTTACAACGAAAAG
AAACAATAGGTGGTGAATTATTAGTTCAGTATCTACGTACAACCCCTGGC
CGTATTATTTTCAATCAATGTGTTAACGATATATTAAATAAATCAGAGGT
GAAATAAATGAAAAATTTAAAACAAAAATTTGATTATGTAAAAATCAATT
TAGCCTCTCCTGAACGTATTCTAGAATGGGCAGAAAAAGTTTTACCTAAT
GGAGAAATAGTAGGTGAAGTGACTGAACCAGAAACAATTAATTATCGGAC
TCATAAACCTGAAAAAGGTGGGTTATTTTGTGAAAAAATATTTGGGCCTG
TTAAAAATTGGGAATGTGCTTGTGGTTTACATAAATATAAAAAAAAAGAT
GTTTTTTTTTGTGAAGTCTGTGGTGTTGAGTTAACAGAATCTCGAGTCCG
TCGACATCGAATGGGATATATTAAATTATTATCTCCAGTTGTTCATATTT
GGTATTTAAAAGGATCACCAAGTCTTTTGTCAGCCATGTTAGCATTACCT
ATCAATGAACTAGAGGCTATTATCTATAATGGAAAAGAACCAGATCAAGA
TGAGGATGTCGAAAAATATGAACAGTTTTTTCTCTCATCTTTTTATGATA
CTGAAGGCGAAGGTTTTCATTACGGAAAAAAACATCAAGGTGCTGAAATT
CTATATCATAGATTAGAAAAAATTGATTTAAAAGCAGAAATTGAAAAAAA
TCGAAATAGAATGTTTTTTGAGACTGCTAAAAAAACTGTCGAAGCTGCGA
TTAAAAAAATTCGTATCTTTGAAAATTTCTTAACTACAAATACTAGACCA
GAATGGATGGTATTATATAATCTTCCAGTCCTTCCACCTGGGATTCGACC
TATTGTGAAATTAGACAATGGTCGATTTGCTACTTCAGATTTAAATGAAC
TATATAGAAAAATTATTATTAGAAATAAGCGATTAAAACGTTTATTATCT
GTTCATGCTCCCAGTGTTGTAATTTCAACTGAAAAACGTATGATTCAAGA
AGCAGTTGATACACTTATTGATAATGGTAAACGCGGTTCTAAAATTTTAG
ATGCAAATAAACGACCGTTAAAATCATTGGCTGATATTATTGAAGGTAAA
CAAGGTAGGTTTCGTCAAAATTTGTTAGGAAAGCGTGTAGATTATTCGGG
CCGTTCAGTGATTATTGTAGGCCCTCAACTTAAACTAAATCAATGTGGTT
TACCTTATGAGATGGCTATTGAATTATTTTTACCGTTTATTATTTATAGA
CTACTTTCTCAAGGATTATCACACTCAATAAAAAGGGCTAAAAAAATTAT
TTATGGAAATGAACCTTTTATTTGGTATTTAACTGAAGAAATTTTGAAAA
AACACCCTATCATTTTAAATCGTGCACCAACGTTACATCGTTTAGGAGTA
CAAGCTTTTGATCCGGTATTAATTAGAGGGCGTGCCATCCAATTACATCC
TCTTGTTTGTCCATCTTTTAACGCAGATTTTGATGGTGATCAAATGGCAG
TTCATATTCCTTTGTCCTTTGAATCACAATTAGAGACAAGATTATGTTTA
TTAGCTCCTAATAATTTTTTATCACCTTCTAGTGGTGAACCAACTATTCA
ACCTTCACAAGATATGGTGTTGGGATTTTATTATTTAACTACTCACAATA
GAAAAAATTTACGAGGTTCAAATAATTATTTTGCTAATTTTAATGAAGTA
ATATCTGCATATGAGCAAAAACAATTACAGCTTCATTCAGCCGTATGGGT
CCGTTGTCCTAATGATGTTAATTTAGATAGCCCATTAAAGTTCATAAATA
AAATAACTTTATCAAAGACTACCTATCTAGTTATTTATAATAATTTACAA
CGAAAAGAAACAATAGGTGGTGAATTATTAGTTCAGTATCTACGTACAAC
CCCTGGCCGTATTATTTTCAATCAATGTGTTAACGATATATTAAATAAAT
CAGAGGTGAAATAA
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