prot_H-paniculata_contig33938.9063.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig33938.9063.1
Unique Nameprot_H-paniculata_contig33938.9063.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length619
Homology
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A6B7EVT1_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVT1_9PHAE)

HSP 1 Score: 1186 bits (3067), Expect = 0.000e+0
Identity = 590/618 (95.47%), Postives = 601/618 (97.25%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILNKSEVK 618
            MKNLKQKFDYVKINLASPERI EWAEKVLPNGE VGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWEC+CGLHK+KKKDVFFCEVCGVE+TESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLA PINELEA+IYNGKEPDQDEDV KYE+ FLSSFYDTEGEGFHYGKK QGAEILYHRL+ +DLK EIEKNRN MFFETAKK VEAAIKKIRIFENFLTTNTRPEWMVLY LPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVC SFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTT NRKNLRGSNNYFANFNEVISAY+QKQLQLHSA+WVRCPND+NLD+PLKFI KI LSKTT LVIYNNLQRKETI GELLVQYLRTTPGRIIFNQCVNDILNKSEVK
Sbjct:    1 MKNLKQKFDYVKINLASPERIQEWAEKVLPNGERVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECSCGLHKFKKKDVFFCEVCGVEVTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPINELEAVIYNGKEPDQDEDVAKYEEVFLSSFYDTEGEGFHYGKKRQGAEILYHRLKNLDLKVEIEKNRNIMFFETAKKKVEAAIKKIRIFENFLTTNTRPEWMVLYFLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTRNRKNLRGSNNYFANFNEVISAYKQKQLQLHSAIWVRCPNDINLDNPLKFIKKINLSKTTQLVIYNNLQRKETIDGELLVQYLRTTPGRIIFNQCVNDILNKSEVK 618          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: D1J788_ECTSI (DNA-directed RNA polymerase subunit beta' n=8 Tax=Ectocarpales TaxID=2877 RepID=D1J788_ECTSI)

HSP 1 Score: 1134 bits (2934), Expect = 0.000e+0
Identity = 560/618 (90.61%), Postives = 586/618 (94.82%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILNKSEVK 618
            MKNLKQKFDYVKINLASPERI EWAEK LPNGEIVGEVT+PETINYRTHKPEKGGLFCEKIFGPVKNWEC CGLHKYK+K+VFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLA PI++LEA+IYNGK+PDQDED+ KYEQ FLSSFYDTEGEGFHYGKK QGAEILYHRL+KIDLK EIE NRN MFF   KK VE AIKKIRIFENFLTT TRPEWMVL+ +PVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVV+ TEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP LKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIY NEPFIWYLTEEIL+KHPIILNRAPTLHRLGVQAFDPVL+RGR+IQLHPLVC SFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLS SSGEPTIQPSQDMVLGFYYLTT NR NL GSNNYF++FNEVISAY+QKQ+Q+HS++WVRCPN++NLDSPLKFI KI LS    L IYNNLQRKET+GGELLVQ+LRTTPGRIIFNQCVNDILNKSEVK
Sbjct:    1 MKNLKQKFDYVKINLASPERIKEWAEKTLPNGEIVGEVTQPETINYRTHKPEKGGLFCEKIFGPVKNWECTCGLHKYKEKNVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLASPISKLEAVIYNGKKPDQDEDLAKYEQVFLSSFYDTEGEGFHYGKKRQGAEILYHRLKKIDLKTEIEINRNVMFFSEVKKKVEVAIKKIRIFENFLTTGTRPEWMVLHFIPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVVLTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVISAYQQKQVQIHSSIWVRCPNEINLDSPLKFIKKINLSNNNTLTIYNNLQRKETMGGELLVQFLRTTPGRIIFNQCVNDILNKSEVK 618          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A0R6MFT6_UNDPI (DNA-directed RNA polymerase subunit beta' n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6MFT6_UNDPI)

HSP 1 Score: 1043 bits (2698), Expect = 0.000e+0
Identity = 514/614 (83.71%), Postives = 555/614 (90.39%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILNK 614
            MKN+KQ+F+YVKINLASPERI EWAEK+LPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKN EC CG +K+K+ D   CE+CGVELTESRVRRHRMGYI LLSPVVHIWYLKGSPS LS +L   I +LE ++YNGKEP+QD+DV KY+ FF    YDTEGEGF YGKK QGAEILY RL++IDLK EI  NRN MF     K VE AIK+IRIFENFLTTNTRPEWMVL+ LPVLPPGIRP+VKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVI TEKRMIQEAVDTLIDNGKRGSK+LDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFLPFIIY+LLSQGLSHSIK+AKKIIY N+ FIWYLTEEIL+KHPIILNRAPTLHRLGVQAFDPVL+RGRAIQLHPLVCP+FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQPSQDMVLGFYYLT  NR  L+GSNNYF+NFNEVI+AYEQKQLQLHS++WVRCP D+ LD+ LKF+  I L     L IYNNLQRKET  G+LLVQY+RTTPGRIIFNQC+N+ILNK
Sbjct:    1 MKNMKQQFEYVKINLASPERIKEWAEKILPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNCECTCGRYKHKEPDTLICEICGVELTESRVRRHRMGYINLLSPVVHIWYLKGSPSFLSTILDSSITKLEGVVYNGKEPEQDQDVSKYDDFF----YDTEGEGFVYGKKRQGAEILYDRLKRIDLKVEIASNRNIMFCSNVTKAVEDAIKRIRIFENFLTTNTRPEWMVLHFLPVLPPGIRPMVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVILTEKRMIQEAVDTLIDNGKRGSKVLDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFIIYKLLSQGLSHSIKKAKKIIYSNQSFIWYLTEEILRKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRMGLKGSNNYFSNFNEVITAYEQKQLQLHSSIWVRCPKDITLDTELKFLKTIVLDNLQTLHIYNNLQRKETKDGQLLVQYIRTTPGRIIFNQCINNILNK 610          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A8F0F9J3_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9J3_9PHAE)

HSP 1 Score: 1011 bits (2615), Expect = 0.000e+0
Identity = 501/614 (81.60%), Postives = 544/614 (88.60%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILNK 614
            MKN+KQ+F+YVKINLASP+ I EWAEK LPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWEC CG +K +   +  CE CGVELTESRVRRHRMGYI LLSPVVHIWYLKGSPSLLSA+L   I  LE++IYNGKEP QD+D+ KY  FF    YD   EGF + KK QGAEILY  L+KI+LK EIE NRN M    A K +E AIK++RIFENFLTTNTRPEW +L+ LPVLPPGIRP+VKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAP+VVI TEKRMIQEAVDTLIDNGKRGSK+LDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFLPF+IY+LLSQ LSHSIKRAKKIIY N PFIW+LTEEIL+KHPIILNRAPTLHRLGVQAFDP+L+RGRAIQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQPSQDMVLGFYYLT  NR  L+G+NNYF++FNEVISAYEQKQLQ+HS++WVRCP D+ LD  LKF+  I LS    L IYNNLQRKET  GELLVQY+RTTPGRIIFN+CVNDILNK
Sbjct:    1 MKNMKQQFEYVKINLASPDCIKEWAEKTLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECTCGRYKQRDLSIVVCETCGVELTESRVRRHRMGYINLLSPVVHIWYLKGSPSLLSAILYSSITRLESVIYNGKEPGQDQDISKYTDFF----YDAMDEGFVFSKKSQGAEILYDSLKKINLKEEIEDNRNIMLCSKAVKKIEDAIKRVRIFENFLTTNTRPEWTILHFLPVLPPGIRPMVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPNVVILTEKRMIQEAVDTLIDNGKRGSKVLDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFLIYKLLSQELSHSIKRAKKIIYSNRPFIWHLTEEILRKHPIILNRAPTLHRLGVQAFDPILVRGRAIQLHPLVCAAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRMQLKGANNYFSDFNEVISAYEQKQLQVHSSIWVRCPTDITLDIQLKFLKTIVLSNNENLHIYNNLQRKETKTGELLVQYIRTTPGRIIFNECVNDILNK 610          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: D1GJH3_FUCVE (DNA-directed RNA polymerase subunit beta' n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJH3_FUCVE)

HSP 1 Score: 993 bits (2566), Expect = 0.000e+0
Identity = 483/615 (78.54%), Postives = 548/615 (89.11%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRC--PNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILN 613
            MKN+K++F+Y++INLASP+RI EW+EK+LP GEI+GEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACG +K+K +++  CE+CGVELTESRVRRHRMGYIKLL+PVVHIWYLKGSPS LS +L   I+++EAI+Y+GKEP+++ ++ KYE FF    Y+ +G GF YGKK QG EILY +L++IDLK EIE NRN MF     K VEAAIK+IRIFENFLTTNTRPEWM+L  LPVLPPGIRP+V+LDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPS+VI TEKRMIQE+VDTLIDNGKRGSK++D N+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP+L LNQCGLPYEMAIELFLPFIIYRLLSQGL HSIK+AKKIIY N+ FIWYLT+EIL KHPIILNRAPTLHRLGVQAFDP+L+ GRAIQLHPLVCP+FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQPSQDMVLGFYYLT  NR  L+G+NNYF+NF+EV+SAY+QKQLQ+HS +WVRC   N + LD+ LKF   I L     + +YNNLQRKET  G+LLVQY+RTTPGRIIFNQC+NDILN
Sbjct:    1 MKNVKEQFEYLRINLASPKRIKEWSEKILPTGEIIGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGRYKHKDEEIAICEICGVELTESRVRRHRMGYIKLLTPVVHIWYLKGSPSFLSIVLDSSISQIEAIVYSGKEPEKEHNILKYEDFF----YENQGPGFVYGKKPQGTEILYDKLKRIDLKVEIEINRNIMFCSNVTKVVEAAIKRIRIFENFLTTNTRPEWMILNFLPVLPPGIRPMVQLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSIVIMTEKRMIQESVDTLIDNGKRGSKVVDTNRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPELHLNQCGLPYEMAIELFLPFIIYRLLSQGLCHSIKKAKKIIYSNQSFIWYLTKEILSKHPIILNRAPTLHRLGVQAFDPILVNGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRIGLKGTNNYFSNFHEVLSAYQQKQLQIHSTIWVRCFNSNQIFLDNELKFCKTIALGNDINIHVYNNLQRKETSQGKLLVQYIRTTPGRIIFNQCLNDILN 611          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A141BSD2_9PHAE (DNA-directed RNA polymerase subunit beta' n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSD2_9PHAE)

HSP 1 Score: 985 bits (2547), Expect = 0.000e+0
Identity = 478/613 (77.98%), Postives = 550/613 (89.72%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILN 613
            MK ++++F+Y++INLASP+RI EW++K LP GE++GEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACG +K++  ++  CE CGVELTESRVRRHRMGYIKLL+PVVHIWYLKG+PS L+++L  PI+ +E IIY+GKEP+QD++V KYE FF     + +  GF +GKK QGAEILY +L+ IDLK EIE NRN MF  T  K VEAAIK+IRIFENFL+TNTRPEWM+L  LPVLPPGIRP+VKL+NGRFATSDLNELYRKIIIRNKRLKRLLSVHAPS+VI TEKRMIQE+VDTLIDNGKRGSK++DAN+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP+L+LNQCGLPYEMAIELFLPFIIY+LLSQGL HSIK+AKKII+ N+PFIWYLT+EIL KHPIILNRAPTLHRLGVQAFDPVL++GRAIQLHPLVCP+FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSP++GEP IQPSQDM+LGFYYLTTHNR  L+G+NNYF++F+EV+SAY+ KQL++HS +WVRC N++ LDS LKFI  I  +    L IYNNLQRKET  G+ LVQY+RTTPGRIIFNQC+NDILN
Sbjct:    1 MKTIEEQFEYIRINLASPQRIKEWSQKTLPTGEVIGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGRYKHRDDEISICETCGVELTESRVRRHRMGYIKLLTPVVHIWYLKGAPSFLASILDSPISRIETIIYSGKEPEQDQEVLKYEDFFP----ENQLPGFVFGKKPQGAEILYDKLKNIDLKIEIETNRNIMFCSTVTKVVEAAIKRIRIFENFLSTNTRPEWMILQFLPVLPPGIRPMVKLENGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSIVIITEKRMIQESVDTLIDNGKRGSKVVDANRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPKLQLNQCGLPYEMAIELFLPFIIYKLLSQGLCHSIKKAKKIIHSNQPFIWYLTKEILSKHPIILNRAPTLHRLGVQAFDPVLVKGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPATGEPNIQPSQDMILGFYYLTTHNRLGLKGANNYFSSFHEVLSAYQHKQLKVHSPIWVRCSNELLLDSKLKFIKTIN-NNNNKLHIYNNLQRKETSEGKFLVQYIRTTPGRIIFNQCLNDILN 608          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A8F0JZT2_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZT2_9PHAE)

HSP 1 Score: 981 bits (2535), Expect = 0.000e+0
Identity = 484/614 (78.83%), Postives = 542/614 (88.27%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILNK 614
            MK +KQ+F+YVKINLASPERI EW EK LPNG+IVGEV EPETINYRTHKPEK GLFCEKIFGPVKNWEC CG +K+K++D   CEVCGVE+TESRVRRHRMGYIKLL+PV+HIWYLKGSPS LSA+LA  +  +E ++Y G++P+       YE FF +       EGF YGKK +G EILY RL+KI+LK EIE NRN MF   A K VE AIK+IRI+ENFLTTNTRPEWM+L  LPVLPPG+RP+VKLD+GRFATSDLNELYRKII+RNKRL RLLSVHAP++VI+TEKRMIQEAVDTLIDNGKRGSK+LDAN+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFLPF+I++LL QGL++SIKRAKKIIY N  FIWYLTEE LKKHPIILNRAPTLHRLGVQAFDPVL+RGRAIQLHPLVCP+FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQP+QDMVLGFYYLT +NR  L+G+NNYF+NFNEV+ AYEQKQLQLHS+VWVR PN++ LD+PL ++  ITL     L IYNNLQRKET+ G+LLVQYLRTTPGRIIFNQCVNDILNK
Sbjct:    1 MKKVKQEFEYVKINLASPERIKEWGEKTLPNGKIVGEVIEPETINYRTHKPEKDGLFCEKIFGPVKNWECTCGRYKHKEEDTLICEVCGVEVTESRVRRHRMGYIKLLAPVLHIWYLKGSPSYLSAILASSVTNIEGLVY-GRDPE----FFDYEDFFFND------EGFVYGKKLEGTEILYDRLKKINLKTEIESNRNIMFCSNATKVVEDAIKRIRIYENFLTTNTRPEWMILNFLPVLPPGLRPMVKLDSGRFATSDLNELYRKIILRNKRLGRLLSVHAPNIVITTEKRMIQEAVDTLIDNGKRGSKVLDANRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLPFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMQLKGANNYFSNFNEVVIAYEQKQLQLHSSVWVRLPNNITLDTPLTYLKTITLKSNENLHIYNNLQRKETMDGKLLVQYLRTTPGRIIFNQCVNDILNK 603          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A8F0JYE1_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYE1_9PHAE)

HSP 1 Score: 890 bits (2299), Expect = 0.000e+0
Identity = 445/611 (72.83%), Postives = 509/611 (83.31%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDI 611
            M   KQ F  VKINLASPERI  W+EK LP+GEI+GEV E ETINYRTHKPEKGGLFCEKIFGPVKNWECACG +K K K+   CEVC VE+ +SRVRRHRMGYI LL+PVVH+WYLKGSPS LSA+L  P+  +E ++Y GK    D    +YEQF  +       E F   K+ +GAEI+Y +L+KIDLK EIE NR  MF     K+ E AIK+IR+FENFLTTNT+PEWMVL  LPVLPPGIRP++++ NGRFATSDLNELYRKIIIRN RL RL+SVHAP+++I TEKRMIQE+VD LIDNGKRG K+LD++KRPLKSLADIIEGKQGRFR NLLGKR DYSGRSVIIVGPQL LNQCGLPYEMAIELFLPFII++LL QGL +SIK+AKKII+ N+ FIW+L +EIL +HPIILNRAPTLHRLGVQAFDPVL+RGRAIQLHPLVCP+FNADFDGDQMAVHIPLSFESQLETRLCLLA NNFLSP++GE  I PSQDMVLGFYYLTT NR  L+G+NNYF+NFNEVISAY+QKQL +HS++WVRC ++++L + LKF   I L     L IYNNLQRKET  G+ LVQYLRTTPGRI+FNQCVNDI
Sbjct:    1 MNKNKQDFVSVKINLASPERIKAWSEKELPSGEIIGEVLESETINYRTHKPEKGGLFCEKIFGPVKNWECACGRYKQKTKNDLICEVCSVEVIDSRVRRHRMGYISLLTPVVHVWYLKGSPSFLSAILESPVKTIEQVVY-GKTFGLD--FSRYEQFLFTE------EDFATEKRLEGAEIIYDQLQKIDLKTEIEMNREIMFCSNNVKSTEDAIKRIRLFENFLTTNTKPEWMVLNCLPVLPPGIRPMIQMANGRFATSDLNELYRKIIIRNNRLGRLISVHAPNMIIKTEKRMIQESVDALIDNGKRGEKVLDSHKRPLKSLADIIEGKQGRFRLNLLGKRTDYSGRSVIIVGPQLALNQCGLPYEMAIELFLPFIIHKLLFQGLVYSIKKAKKIIFSNDSFIWFLLKEILIQHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLATNNFLSPATGEANIHPSQDMVLGFYYLTTQNRMKLKGANNYFSNFNEVISAYQQKQLHVHSSIWVRCSDNIDLYTQLKFFKTIELQNGNRLHIYNNLQRKETKNGDFLVQYLRTTPGRILFNQCVNDI 602          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A8E6D698_9PHAE (DNA-directed RNA polymerase subunit beta' n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D698_9PHAE)

HSP 1 Score: 846 bits (2186), Expect = 1.070e-303
Identity = 419/621 (67.47%), Postives = 505/621 (81.32%), Query Frame = 0
Query:    1 MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYN---------GKEPDQDEDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDIL 612
            +K +K++F+YVKINLASPE+I  W EK LP GE+VGEVTE ETINYRT+KPEKGGLFCEKIFGP+KNWEC CG +     D   CE CGVE+TES+VRRHRMGYI+LL PV HIWYLKGSPS LS +L   +  LE +IY           +E ++DE++   + FF              G + +G   LY+RL+KI+L+ EIEK+R  M    + K  E AIK+IRI ENFL+TNT+PEWM+LY LPV+PPG+RPI+KL+NGRFA+SDLNELYR+IIIRNKRL RL+SVHAPSVV++TE RMIQE++DTLIDNGKRG+ ++D++KRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFLPF++++L+ QGL++SI +AKKIIY N+ FIW L +EIL +HP+ILNRAPTLHRLGVQAFD +L+ GRAIQLHPLVCP+FNADFDGDQMAVHIPLSFESQ+ETRLCLLAPNNFLSP++G+P IQP+QDMVLGFYYLT  N  NL+GSN+YF +F EVI AY QKQL +HS++WVRCP ++ LD  L     +TL K + + IY +LQRKET  G LLVQYLRTTPGR+IFNQ VN++L
Sbjct:    3 IKKMKRQFEYVKINLASPEQIRGWGEKYLPTGEVVGEVTESETINYRTYKPEKGGLFCEKIFGPIKNWECGCGQYTQSFDDGIICENCGVEVTESKVRRHRMGYIRLLVPVAHIWYLKGSPSFLSIVLKQSVKTLEEMIYGKDLKEEGFLDEENEEDEEIINKKHFFS-------------GNQLEGINSLYNRLKKINLRDEIEKSREIMLCAKSAKPFEDAIKRIRILENFLSTNTKPEWMLLYFLPVIPPGLRPIIKLENGRFASSDLNELYRRIIIRNKRLGRLMSVHAPSVVLNTETRMIQESIDTLIDNGKRGATVVDSHKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFLMHKLIYQGLANSINKAKKIIYNNKSFIWGLLKEILGRHPVILNRAPTLHRLGVQAFDAILVTGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQIETRLCLLAPNNFLSPATGDPVIQPTQDMVLGFYYLTAQNHTNLKGSNHYFGSFEEVILAYSQKQLHIHSSIWVRCPVNIELDIKLDLPKIVTL-KDSRIKIYKDLQRKETHKGHLLVQYLRTTPGRVIFNQEVNNLL 609          
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Match: A0A2I4Q2A7_9PHAE (DNA-directed RNA polymerase subunit beta' n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A7_9PHAE)

HSP 1 Score: 831 bits (2146), Expect = 1.030e-297
Identity = 416/612 (67.97%), Postives = 492/612 (80.39%), Query Frame = 0
Query:    4 LKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHKPEKGGLFCEKIFGPVKNWECACGLHKYKKKDV-FFCEVCGVELTESRVRRHRMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQD-EDVEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRNRMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIVKLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAVDTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRCPNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPGRIIFNQCVNDILN 613
            ++Q++  ++INLAS ERI +W+E  LPNGEIVGE+TE +TINYRTHKPE+ GLFC+KIFGP+K+WEC CGL+K +       CEVCGV +TESRVRRHRMGYI LL PVVHIWYL+G P+ LS +L  P+ +LE  IY GK   +D  + E++E+F L      EGE      + QGAEI+Y +L+++DLK EI+ NR  M    + K VE AIK++RIFENFL T T+PEWM+   LPVLPPG+RPIV+LDNGR ATSDLNE YRKI+IR +RL RLLSV APS++I TEKRMIQE+VD LIDNGKRG K+LD +KRPLKSLA++IEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL LNQCGLPYEMA+ELFLPF+I+++    L+ SIK AKKIIY N+ FIWYL +EIL KHPIILNRAPTLHRLGVQAFDPVL+ GRAIQLHPLVCP+FNADFDGDQMAVHIPLS ESQLETRLCLLA NNFLSP++GEP I PSQDMVLGFYYLTT NR  L+G+NNYF+ FNEVISAY+QK+L LHS++WVRCP  V L+  L  +    L     L IY N Q+KET  G+ L QYLRTTPGRIIFN+ +N+ILN
Sbjct:    1 MRQEYQCIQINLASSERIKKWSEITLPNGEIVGEITESDTINYRTHKPERNGLFCQKIFGPIKDWECICGLYKNEVTQAGLICEVCGVAITESRVRRHRMGYINLLHPVVHIWYLRGIPNFLSIILKAPLKKLEETIY-GKNLSRDLTNYEEFEEFIL------EGELLSAQNQLQGAEIIYKKLKRLDLKEEIKNNRLIMVSSKSTKAVEDAIKRVRIFENFLATKTKPEWMIFNVLPVLPPGLRPIVQLDNGRLATSDLNEFYRKILIRTQRLGRLLSVQAPSMIIFTEKRMIQESVDALIDNGKRGPKVLDIHKRPLKSLAEMIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLHLNQCGLPYEMAVELFLPFLIHKIFFLKLAGSIKTAKKIIYSNKSFIWYLLKEILNKHPIILNRAPTLHRLGVQAFDPVLVTGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLESQLETRLCLLATNNFLSPATGEPNILPSQDMVLGFYYLTTQNRIKLKGNNNYFSTFNEVISAYQQKKLHLHSSIWVRCPKTVKLEMELVLLKIHILPNKDKLYIYQNFQKKETFDGKFLTQYLRTTPGRIIFNRRINEILN 605          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33938.9063.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EVT1_9PHAE0.000e+095.47DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
D1J788_ECTSI0.000e+090.61DNA-directed RNA polymerase subunit beta' n=8 Tax=... [more]
A0A0R6MFT6_UNDPI0.000e+083.71DNA-directed RNA polymerase subunit beta' n=25 Tax... [more]
A0A8F0F9J3_9PHAE0.000e+081.60DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
D1GJH3_FUCVE0.000e+078.54DNA-directed RNA polymerase subunit beta' n=3 Tax=... [more]
A0A141BSD2_9PHAE0.000e+077.98DNA-directed RNA polymerase subunit beta' n=14 Tax... [more]
A0A8F0JZT2_9PHAE0.000e+078.83DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A8F0JYE1_9PHAE0.000e+072.83DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A8E6D698_9PHAE1.070e-30367.47DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]
A0A2I4Q2A7_9PHAE1.030e-29767.97DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006592RNA polymerase, N-terminalSMARTSM00663rpolaneu7coord: 232..511
e-value: 2.3E-150
score: 515.5
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 6..339
e-value: 5.0E-71
score: 239.6
IPR007066RNA polymerase Rpb1, domain 3PFAMPF04983RNA_pol_Rpb1_3coord: 486..606
e-value: 8.2E-12
score: 45.3
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 341..396
e-value: 2.4E-9
score: 37.6
coord: 401..478
e-value: 9.6E-22
score: 78.0
IPR042102RNA polymerase Rpb1, domain 3 superfamilyGENE3D1.10.274.100coord: 486..618
e-value: 3.7E-30
score: 107.5
NoneNo IPR availableGENE3D1.10.40.90coord: 370..413
e-value: 2.9E-10
score: 42.0
NoneNo IPR availablePANTHERPTHR19376:SF32DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1coord: 4..587
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 4..587
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 384..618
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..364
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 365..383
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 6..612
IPR034678DNA-directed RNA polymerase subunit RpoC1HAMAPMF_01323RNApol_bact_RpoC1coord: 1..614
score: 24.248

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33938contigH-paniculata_contig33938:409..2265 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33938.9063.1mRNA_H-paniculata_contig33938.9063.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig33938 409..2265 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig33938.9063.1 ID=prot_H-paniculata_contig33938.9063.1|Name=mRNA_H-paniculata_contig33938.9063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=619bp
MKNLKQKFDYVKINLASPERILEWAEKVLPNGEIVGEVTEPETINYRTHK
PEKGGLFCEKIFGPVKNWECACGLHKYKKKDVFFCEVCGVELTESRVRRH
RMGYIKLLSPVVHIWYLKGSPSLLSAMLALPINELEAIIYNGKEPDQDED
VEKYEQFFLSSFYDTEGEGFHYGKKHQGAEILYHRLEKIDLKAEIEKNRN
RMFFETAKKTVEAAIKKIRIFENFLTTNTRPEWMVLYNLPVLPPGIRPIV
KLDNGRFATSDLNELYRKIIIRNKRLKRLLSVHAPSVVISTEKRMIQEAV
DTLIDNGKRGSKILDANKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRS
VIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYG
NEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLV
CPSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPS
QDMVLGFYYLTTHNRKNLRGSNNYFANFNEVISAYEQKQLQLHSAVWVRC
PNDVNLDSPLKFINKITLSKTTYLVIYNNLQRKETIGGELLVQYLRTTPG
RIIFNQCVNDILNKSEVK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006592RNA_pol_N
IPR007080RNA_pol_Rpb1_1
IPR007066RNA_pol_Rpb1_3
IPR000722RNA_pol_asu
IPR042102RNA_pol_Rpb1_3_sf
IPR034678RNApol_RpoC1