mRNA_H-paniculata_contig30003.8151.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30003.8151.1
Unique NamemRNA_H-paniculata_contig30003.8151.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A6A3LVG8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LVG8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.720e-13
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    4 VEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
            V + AY DSDYA C+D+RRSV G   ++G   + W SR Q + A  T EA+YVALA    EVLFL
Sbjct:  951 VVLRAYTDSDYAGCEDDRRSVSGYVTMIGNCTVTWSSRKQRIVAQSTAEAEYVALAHCTREVLFL 1015          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A225VGP7_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VGP7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.880e-13
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    4 VEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
            V + A+ DSDYA C+D+RRSV G   ++G   I W SR Q + A  T EA+YVALA    EVLFL
Sbjct:  520 VVLKAFTDSDYAACEDDRRSVSGYVTMIGQCTITWSSRRQRIVAQSTAEAEYVALAHCTREVLFL 584          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A1J3CZK1_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CZK1_NOCCA)

HSP 1 Score: 65.9 bits (159), Expect = 1.750e-12
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   19 YADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
            Y+DSDYA   D RRS+ G    +GG  ++W S  Q+V AL TTEA+Y+AL+E V E ++L
Sbjct:    5 YSDSDYAADVDRRRSITGYVFTVGGNVVSWKSNLQQVVALSTTEAEYIALSEAVKEGIWL 64          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A438G7Y4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis TaxID=3603 RepID=A0A438G7Y4_VITVI)

HSP 1 Score: 65.5 bits (158), Expect = 4.010e-12
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    4 VEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
            +E++ Y+DSD+A CQD+RRS  G   LL GGAI+W S  Q +    T EA++VA  E  N+ ++L
Sbjct:   56 LELIGYSDSDFAGCQDSRRSTSGYIYLLAGGAISWRSAKQTLVTSSTMEAEFVACYEASNQGIWL 120          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A1Q3EMP4_LENED (Retrovirus-related pol polyprotein n=1 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3EMP4_LENED)

HSP 1 Score: 68.2 bits (165), Expect = 4.540e-12
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 GVEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNE 186
            G+  + YAD+DYA+C D+RRS  G   ++ GG   W S+ Q+V AL TTEA+Y+ALA+ V +
Sbjct:  114 GLNPVTYADADYASCIDSRRSTSGVMTIMAGGPTFWMSKRQDVVALSTTEAEYIALAKAVQQ 175          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A699NAV2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699NAV2_TANCI)

HSP 1 Score: 68.2 bits (165), Expect = 5.350e-12
Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   10 MLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
            + AYAD+DYA CQD RRS+ G A  LG   ++W S+ Q+ TA+ TT+A+Y+ ++E   ++L++
Sbjct:  213 LTAYADADYAGCQDTRRSISGSAQFLGDKLVSWSSKKQQSTAISTTKAEYITMSECCAQILWM 275          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A5S6QB25_TRIMR (Uncharacterized protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QB25_TRIMR)

HSP 1 Score: 65.5 bits (158), Expect = 1.210e-11
Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   10 MLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
            + AY D+D+A+ +D+RRS  G  V L G A++W+S+ Q   AL TTEA+Y+A++ T+ E+ +L
Sbjct:   21 LTAYCDADWASDRDDRRSTTGFVVCLSGAAMSWNSKKQRTVALSTTEAEYMAMSHTIQEITWL 83          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A1Q3EFZ1_LENED (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3EFZ1_LENED)

HSP 1 Score: 67.4 bits (163), Expect = 1.550e-11
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 GVEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNE 186
            G+  + YAD+DYA+C D+RRS  G   ++ GG   W S+ Q+V AL TTEA+Y+ALA+ V +
Sbjct:  403 GLSPIVYADADYASCVDSRRSTSGVLTIMAGGPTFWMSKRQDVVALLTTEAEYIALAKAVQQ 464          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A438JAH2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JAH2_VITVI)

HSP 1 Score: 67.4 bits (163), Expect = 1.570e-11
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    4 VEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
            +E++ Y+DSD+A CQDNRRS  G   LL GGAI+W S  Q +    T EA++VA  E  N+ ++L
Sbjct:  722 LELIGYSDSDFAGCQDNRRSTSGYIYLLAGGAISWRSAKQTLVTSSTMEAEFVACYEASNQGIWL 786          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A699TMA8_TANCI (Uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699TMA8_TANCI)

HSP 1 Score: 63.9 bits (154), Expect = 1.570e-11
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    4 VEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
            V + A+AD+DYA CQD RRS  G    LG   I+W S+ Q+  A+ +TEAKY+AL+    ++L++
Sbjct:   53 VALTAFADADYAGCQDTRRSTSGSVQFLGERLISWSSKRQKSAAISSTEAKYIALSGCCAQILWM 117          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3LVG8_9STRA2.720e-1352.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A225VGP7_9STRA6.880e-1352.31Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4... [more]
A0A1J3CZK1_NOCCA1.750e-1250.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438G7Y4_VITVI4.010e-1246.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A1Q3EMP4_LENED4.540e-1248.39Retrovirus-related pol polyprotein n=1 Tax=Lentinu... [more]
A0A699NAV2_TANCI5.350e-1244.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A5S6QB25_TRIMR1.210e-1144.44Uncharacterized protein n=1 Tax=Trichuris muris Ta... [more]
A0A1Q3EFZ1_LENED1.550e-1148.39Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JAH2_VITVI1.570e-1147.69Retrovirus-related Pol polyprotein from transposon... [more]
A0A699TMA8_TANCI1.570e-1144.62Uncharacterized mitochondrial protein AtMg00810-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30003contigH-paniculata_contig30003:31..228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score63.9
Seed ortholog evalue3e-08
Seed eggNOG ortholog7425.NV18873-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size189
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929922.3974903-UTR-H-paniculata_contig30003:30..391622929922.3974903-UTR-H-paniculata_contig30003:30..39Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30003 31..39 +
1691481071.0299993-UTR-H-paniculata_contig30003:30..391691481071.0299993-UTR-H-paniculata_contig30003:30..39Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30003 31..39 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929922.408117-CDS-H-paniculata_contig30003:39..2281622929922.408117-CDS-H-paniculata_contig30003:39..228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30003 40..228 +
1691481071.0435302-CDS-H-paniculata_contig30003:39..2281691481071.0435302-CDS-H-paniculata_contig30003:39..228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30003 40..228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30003.8151.1prot_H-paniculata_contig30003.8151.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30003 40..228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30003.8151.1

>prot_H-paniculata_contig30003.8151.1 ID=prot_H-paniculata_contig30003.8151.1|Name=mRNA_H-paniculata_contig30003.8151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKY
VALAETVNEVLFL
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mRNA from alignment at H-paniculata_contig30003:31..228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30003.8151.1 ID=mRNA_H-paniculata_contig30003.8151.1|Name=mRNA_H-paniculata_contig30003.8151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig30003:31..228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTCGAAATGTTGGCTTACGCTGACTCGGACTACGCGACATGCCAGGA CAACCGACGCTCGGTCTTCGGCAGAGCGGTACTGCTGGGAGGGGGCGCCA TTAATTGGCACTCGAGGACTCAGGAGGTGACGGCGTTGGGGACAACAGAA GCCAAGTATGTGGCGTTGGCGGAGACGGTGAACGAAGTACTGTTTCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig30003:31..228+

>mRNA_H-paniculata_contig30003.8151.1 ID=mRNA_H-paniculata_contig30003.8151.1|Name=mRNA_H-paniculata_contig30003.8151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig30003:31..228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGCTTACGCTGACTCGGACTACGCGACATGCCAGGACAACCGACG
CTCGGTCTTCGGCAGAGCGGTACTGCTGGGAGGGGGCGCCATTAATTGGC
ACTCGAGGACTCAGGAGGTGACGGCGTTGGGGACAACAGAAGCCAAGTAT
GTGGCGTTGGCGGAGACGGTGAACGAAGTACTGTTTCTCATGTTGGCTTA
CGCTGACTCGGACTACGCGACATGCCAGGACAACCGACGCTCGGTCTTCG
GCAGAGCGGTACTGCTGGGAGGGGGCGCCATTAATTGGCACTCGAGGACT
CAGGAGGTGACGGCGTTGGGGACAACAGAAGCCAAGTATGTGGCGTTGGC
GGAGACGGTGAACGAAGTACTGTTTCTC
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