prot_H-paniculata_contig30003.8151.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig30003.8151.1
Unique Nameprot_H-paniculata_contig30003.8151.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length63
Homology
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A6A3LVG8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LVG8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.470e-13
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 0
Query:    1 MLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 63
            + AY DSDYA C+D+RRSV G   ++G   + W SR Q + A  T EA+YVALA    EVLFL
Sbjct:  953 LRAYTDSDYAGCEDDRRSVSGYVTMIGNCTVTWSSRKQRIVAQSTAEAEYVALAHCTREVLFL 1015          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A1J3CZK1_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CZK1_NOCCA)

HSP 1 Score: 66.2 bits (160), Expect = 1.090e-12
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 0
Query:    4 YADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 63
            Y+DSDYA   D RRS+ G    +GG  ++W S  Q+V AL TTEA+Y+AL+E V E ++L
Sbjct:    5 YSDSDYAADVDRRRSITGYVFTVGGNVVSWKSNLQQVVALSTTEAEYIALSEAVKEGIWL 64          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A225VGP7_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VGP7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.130e-12
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 0
Query:    1 MLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 63
            + A+ DSDYA C+D+RRSV G   ++G   I W SR Q + A  T EA+YVALA    EVLFL
Sbjct:  522 LKAFTDSDYAACEDDRRSVSGYVTMIGQCTITWSSRRQRIVAQSTAEAEYVALAHCTREVLFL 584          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A699NAV2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699NAV2_TANCI)

HSP 1 Score: 68.2 bits (165), Expect = 4.740e-12
Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    1 MLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 63
            + AYAD+DYA CQD RRS+ G A  LG   ++W S+ Q+ TA+ TT+A+Y+ ++E   ++L++
Sbjct:  213 LTAYADADYAGCQDTRRSISGSAQFLGDKLVSWSSKKQQSTAISTTKAEYITMSECCAQILWM 275          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A5S6QB25_TRIMR (Uncharacterized protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QB25_TRIMR)

HSP 1 Score: 65.5 bits (158), Expect = 1.070e-11
Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    1 MLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 63
            + AY D+D+A+ +D+RRS  G  V L G A++W+S+ Q   AL TTEA+Y+A++ T+ E+ +L
Sbjct:   21 LTAYCDADWASDRDDRRSTTGFVVCLSGAAMSWNSKKQRTVALSTTEAEYMAMSHTIQEITWL 83          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A5M8PTI0_9LECA (CoA-transferase family III n=1 Tax=Lasallia pustulata TaxID=136370 RepID=A0A5M8PTI0_9LECA)

HSP 1 Score: 67.4 bits (163), Expect = 1.390e-11
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    1 MLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 63
            +  YADSD+A  +D+RRSV G  V++GGGAI+W SR Q+  +  T EA+Y+ALA+   + L++
Sbjct:  925 VTVYADSDHAADRDDRRSVLGYTVMIGGGAISWVSRRQKSVSTSTAEAEYIALAQASKQTLWI 987          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A6L2KJ26_TANCI (Copia protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2KJ26_TANCI)

HSP 1 Score: 67.4 bits (163), Expect = 1.390e-11
Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    1 MLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 63
            + AYAD+D+A CQD RRS  G A  LG   ++W S+ Q++TA+ TTEAKY++++    ++L++
Sbjct:  559 LTAYADADHAGCQDTRRSTSGSAQFLGDKLVSWSSKKQKITAISTTEAKYISMSGCCAQILWM 621          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A6A3G1N0_9STRA (Uncharacterized protein (Fragment) n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3G1N0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.050e-11
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 0
Query:    1 MLAYADSDYATCQDNRRSVFGRAV-LLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 63
            + AY+D+DYA   D RRSV G    L G   I+W S  Q++  L TTEA+YVALA TV EVL+L
Sbjct:   77 LSAYSDADYANSVDTRRSVSGYVTYLFGNSPISWRSFLQKLVTLSTTEAEYVALASTVQEVLYL 140          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A1Q3EMP4_LENED (Retrovirus-related pol polyprotein n=1 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3EMP4_LENED)

HSP 1 Score: 66.2 bits (160), Expect = 2.080e-11
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    2 LAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNE 59
            + YAD+DYA+C D+RRS  G   ++ GG   W S+ Q+V AL TTEA+Y+ALA+ V +
Sbjct:  118 VTYADADYASCIDSRRSTSGVMTIMAGGPTFWMSKRQDVVALSTTEAEYIALAKAVQQ 175          
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: UPI0009C0BF6C (uncharacterized protein LOC18422418 isoform X3 n=2 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0009C0BF6C)

HSP 1 Score: 64.3 bits (155), Expect = 2.830e-11
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    3 AYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 63
            A +D+DYA  +D RRS  G    +GGGA++W SR Q++  L +TEA+YVAL E   EV++L
Sbjct:   33 ALSDADYAGSRDTRRSTTGYIFNVGGGAVSWMSRLQDIVVLPSTEAEYVALIEAAKEVIWL 93          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3LVG8_9STRA4.470e-1352.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3CZK1_NOCCA1.090e-1250.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A225VGP7_9STRA1.130e-1252.38Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4... [more]
A0A699NAV2_TANCI4.740e-1244.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A5S6QB25_TRIMR1.070e-1144.44Uncharacterized protein n=1 Tax=Trichuris muris Ta... [more]
A0A5M8PTI0_9LECA1.390e-1147.62CoA-transferase family III n=1 Tax=Lasallia pustul... [more]
A0A6L2KJ26_TANCI1.390e-1144.44Copia protein n=1 Tax=Tanacetum cinerariifolium Ta... [more]
A0A6A3G1N0_9STRA2.050e-1153.13Uncharacterized protein (Fragment) n=4 Tax=Phytoph... [more]
A0A1Q3EMP4_LENED2.080e-1150.00Retrovirus-related pol polyprotein n=1 Tax=Lentinu... [more]
UPI0009C0BF6C2.830e-1149.18uncharacterized protein LOC18422418 isoform X3 n=2... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..63
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 2..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30003contigH-paniculata_contig30003:40..228 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30003.8151.1mRNA_H-paniculata_contig30003.8151.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig30003 31..228 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig30003.8151.1 ID=prot_H-paniculata_contig30003.8151.1|Name=mRNA_H-paniculata_contig30003.8151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKY
VALAETVNEVLFL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like