mRNA_H-paniculata_contig30003.8151.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A6A3LVG8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LVG8_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 2.720e-13 Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 4 VEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
V + AY DSDYA C+D+RRSV G ++G + W SR Q + A T EA+YVALA EVLFL
Sbjct: 951 VVLRAYTDSDYAGCEDDRRSVSGYVTMIGNCTVTWSSRKQRIVAQSTAEAEYVALAHCTREVLFL 1015
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A225VGP7_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VGP7_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 6.880e-13 Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 4 VEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
V + A+ DSDYA C+D+RRSV G ++G I W SR Q + A T EA+YVALA EVLFL
Sbjct: 520 VVLKAFTDSDYAACEDDRRSVSGYVTMIGQCTITWSSRRQRIVAQSTAEAEYVALAHCTREVLFL 584
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A1J3CZK1_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CZK1_NOCCA) HSP 1 Score: 65.9 bits (159), Expect = 1.750e-12 Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 19 YADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
Y+DSDYA D RRS+ G +GG ++W S Q+V AL TTEA+Y+AL+E V E ++L
Sbjct: 5 YSDSDYAADVDRRRSITGYVFTVGGNVVSWKSNLQQVVALSTTEAEYIALSEAVKEGIWL 64
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A438G7Y4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis TaxID=3603 RepID=A0A438G7Y4_VITVI) HSP 1 Score: 65.5 bits (158), Expect = 4.010e-12 Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 4 VEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
+E++ Y+DSD+A CQD+RRS G LL GGAI+W S Q + T EA++VA E N+ ++L
Sbjct: 56 LELIGYSDSDFAGCQDSRRSTSGYIYLLAGGAISWRSAKQTLVTSSTMEAEFVACYEASNQGIWL 120
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A1Q3EMP4_LENED (Retrovirus-related pol polyprotein n=1 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3EMP4_LENED) HSP 1 Score: 68.2 bits (165), Expect = 4.540e-12 Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 1 GVEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNE 186
G+ + YAD+DYA+C D+RRS G ++ GG W S+ Q+V AL TTEA+Y+ALA+ V +
Sbjct: 114 GLNPVTYADADYASCIDSRRSTSGVMTIMAGGPTFWMSKRQDVVALSTTEAEYIALAKAVQQ 175
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A699NAV2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699NAV2_TANCI) HSP 1 Score: 68.2 bits (165), Expect = 5.350e-12 Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 1
Query: 10 MLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
+ AYAD+DYA CQD RRS+ G A LG ++W S+ Q+ TA+ TT+A+Y+ ++E ++L++
Sbjct: 213 LTAYADADYAGCQDTRRSISGSAQFLGDKLVSWSSKKQQSTAISTTKAEYITMSECCAQILWM 275
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A5S6QB25_TRIMR (Uncharacterized protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QB25_TRIMR) HSP 1 Score: 65.5 bits (158), Expect = 1.210e-11 Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 1
Query: 10 MLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
+ AY D+D+A+ +D+RRS G V L G A++W+S+ Q AL TTEA+Y+A++ T+ E+ +L
Sbjct: 21 LTAYCDADWASDRDDRRSTTGFVVCLSGAAMSWNSKKQRTVALSTTEAEYMAMSHTIQEITWL 83
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A1Q3EFZ1_LENED (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3EFZ1_LENED) HSP 1 Score: 67.4 bits (163), Expect = 1.550e-11 Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 1 GVEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNE 186
G+ + YAD+DYA+C D+RRS G ++ GG W S+ Q+V AL TTEA+Y+ALA+ V +
Sbjct: 403 GLSPIVYADADYASCVDSRRSTSGVLTIMAGGPTFWMSKRQDVVALLTTEAEYIALAKAVQQ 464
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A438JAH2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JAH2_VITVI) HSP 1 Score: 67.4 bits (163), Expect = 1.570e-11 Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 4 VEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
+E++ Y+DSD+A CQDNRRS G LL GGAI+W S Q + T EA++VA E N+ ++L
Sbjct: 722 LELIGYSDSDFAGCQDNRRSTSGYIYLLAGGAISWRSAKQTLVTSSTMEAEFVACYEASNQGIWL 786
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Match: A0A699TMA8_TANCI (Uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699TMA8_TANCI) HSP 1 Score: 63.9 bits (154), Expect = 1.570e-11 Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 4 VEMLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYVALAETVNEVLFL 198
V + A+AD+DYA CQD RRS G LG I+W S+ Q+ A+ +TEAKY+AL+ ++L++
Sbjct: 53 VALTAFADADYAGCQDTRRSTSGSVQFLGERLISWSSKRQKSAAISSTEAKYIALSGCCAQILWM 117 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30003.8151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig30003.8151.1 >prot_H-paniculata_contig30003.8151.1 ID=prot_H-paniculata_contig30003.8151.1|Name=mRNA_H-paniculata_contig30003.8151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp MLAYADSDYATCQDNRRSVFGRAVLLGGGAINWHSRTQEVTALGTTEAKYback to top mRNA from alignment at H-paniculata_contig30003:31..228+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig30003.8151.1 ID=mRNA_H-paniculata_contig30003.8151.1|Name=mRNA_H-paniculata_contig30003.8151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig30003:31..228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig30003:31..228+ >mRNA_H-paniculata_contig30003.8151.1 ID=mRNA_H-paniculata_contig30003.8151.1|Name=mRNA_H-paniculata_contig30003.8151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig30003:31..228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |