mRNA_H-paniculata_contig25007.6812.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A5A7SSH2_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SSH2_CUCME) HSP 1 Score: 95.9 bits (237), Expect = 2.680e-21 Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 22 PVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
P+ F D+ + + W A+ E + +E K WT ++ + G+ + +WV+ K +E G V K K RLVA+G+SQQH +D+ +VFAP ++M++A+A + DW ++QLDVK AF
Sbjct: 112 PICFEDVVQNEN---WRLAMDNEIKSIEKNKTWTLIE-LPSGAKRIGVKWVYKTKYNEHGKVDKNKARLVAKGYSQQHEIDYTKVFAPVARMDTIRMIVALAAQKDWKIFQLDVKSAF 225
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A0L9TUK8_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9TUK8_PHAAN) HSP 1 Score: 96.7 bits (239), Expect = 8.920e-21 Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 43 KKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
K+ + W EA+ E + +E K W D+ G + +WVF K++E GN+ K K RLVA+G+SQQ+ VD+ +VFAP V++++A+A ++ W ++QLDVK AF
Sbjct: 840 KEASQSIKWREAMNAEIQAIEKNKTWELTDAPT-GITPIGVKWVFKTKLNEHGNIEKHKARLVAKGYSQQYGVDYTEVFAPVARLDTVRVLLAIAAQHKWEVFQLDVKSAF 949
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A5B7B5N1_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B5N1_DAVIN) HSP 1 Score: 90.5 bits (223), Expect = 1.270e-20 Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query: 31 FSDIKKLTHK-----TLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
FSD +T K + W +A+ E E +E W + + KG N + +WV+ K+ + G V K K RLVA+G+ Q+ VD+ +VFAP +++VIA+A +N W ++Q+DVK AF
Sbjct: 28 FSDCDPVTFKEAVKESKWRKAMDTEIEAIERNNTWELTE-LPKGQNTIGVKWVYKTKLKKTGEVDKYKARLVAKGYKQEFGVDYKEVFAPVARHDTIRLVIALAAQNSWLIFQMDVKSAF 146
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A445FKH7_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FKH7_GLYSO) HSP 1 Score: 95.9 bits (237), Expect = 1.660e-20 Identity = 46/122 (37.70%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 10 TEEPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
TE+ P+ F K W +A+ E E +E K W + + KG + +WVF K++E+G V K K RLVA+G++QQ+ V++ +VFAP +++++A+A +N+W ++QLDVK AF
Sbjct: 741 TEDDPLTFEQAVK---SKKWRDAMMAEIESIEKNKTWE-LTILPKGVKPIGVKWVFKTKLNEKGEVDKYKARLVAKGYAQQYGVNYTEVFAPVARLDTIRLILALAAQNNWDVFQLDVKSAF 858
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A2K3MSV4_TRIPR (Copia-type polyprotein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MSV4_TRIPR) HSP 1 Score: 95.1 bits (235), Expect = 3.090e-20 Identity = 42/122 (34.43%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 10 TEEPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
TE+ P+ F + +K W +A++ E E +E K W + + G + +W++ K++E G + K K RLVA+G++QQ+ VD+ +VFAP +++++A+A ++ W ++QLDVK AF
Sbjct: 832 TEDDPLSFEEARK---SNKWRDAMKAEIESIEKNKTWE-LTILPNGIKPIGVKWIYKTKLNENGQIDKYKARLVAKGYAQQYGVDYTEVFAPVARLDTIRLILALAAQHSWDVFQLDVKSAF 949
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A392MKZ8_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MKZ8_9FABA) HSP 1 Score: 94.4 bits (233), Expect = 3.250e-20 Identity = 42/120 (35.00%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 16 EPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
+ P F++++K +W +A+ E E +EN W ++ ++ G+N + +W+F K +E+G + K K RLV +G+SQ+H VD+ +VFAP ++ ++A+A + +W ++QLDVK AF
Sbjct: 48 DDPKNFAEVEKFE---VWRKAMDQEMESIENSNTW-HLTTLPDGANAIGVKWIFKTKYNEKGEIEKHKARLVDKGYSQKHGVDYNEVFAPVAXWDTIRAILALAAKENWKVFQLDVKSAF 163
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A151SRC1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SRC1_CAJCA) HSP 1 Score: 92.8 bits (229), Expect = 3.260e-20 Identity = 42/103 (40.78%), Postives = 68/103 (66.02%), Query Frame = 1
Query: 67 WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
W EA+ +E + +E K W D+ KG + +WVF K++E+G+V K K RLV +G+SQQ+ VD+ +VFAP V++++A+A ++ W +++LDVK AF
Sbjct: 185 WREAMNMEIQAIERNKTWELTDAP-KGVTPIGVKWVFKTKLNERGHVEKHKARLVEKGYSQQYGVDYTEVFAPVARLDTVRVLLALAAQHRWEVFELDVKSAF 286
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A4Y1RBF6_PRUDU (ADP glucose pyrophosphorylase large subunit 1 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RBF6_PRUDU) HSP 1 Score: 94.4 bits (233), Expect = 5.610e-20 Identity = 44/118 (37.29%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 22 PVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
P+ +++ K + W EA+ E + +E + W D + KG + +WVF K++E+G V K K RLVA+G+ Q+H +D+ +VFAP +++VI++A +N W ++QLDVK AF
Sbjct: 404 PITYTEAVK---EEKWREAMDNEIKSIEKNQTWELTD-LPKGKQTIGVKWVFRTKLNEKGEVDKHKARLVAKGYKQKHGIDYKEVFAPVARHDTIRLVISLAAQNSWQIFQLDVKSAF 517
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A4Y1R4M3_PRUDU (ADP glucose pyrophosphorylase large subunit 1 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R4M3_PRUDU) HSP 1 Score: 94.4 bits (233), Expect = 5.750e-20 Identity = 44/118 (37.29%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 22 PVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
P+ +++ K + W EA+ E + +E + W D + KG + +WVF K++E+G V K K RLVA+G+ Q+H +D+ +VFAP +++VI++A +N W ++QLDVK AF
Sbjct: 846 PITYTEAVK---EEKWREAMDNEIKSIEKNQTWELTD-LPKGKQTIGVKWVFRTKLNEKGEVDKHKARLVAKGYKQKHGIDYKEVFAPVARHDTIRLVISLAAQNSWQIFQLDVKSAF 959
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A1J3E602_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3E602_NOCCA) HSP 1 Score: 92.4 bits (228), Expect = 6.520e-20 Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 1
Query: 61 TLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
T+W EAV E + +E W D + KG V+++WVF K G + + K RLVARGF+Q + D+L FAP V++V+A+A DW MWQ+DVK AF
Sbjct: 215 TVWVEAVEDETQAMERNHTWDEAD-LPKGKRAVTSKWVFTIKYLRTGEIERHKARLVARGFTQTYGQDYLDTFAPVAKLHTVRVVLALAANLDWDMWQMDVKNAF 318 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig25007.6812.1 >prot_H-paniculata_contig25007.6812.1 ID=prot_H-paniculata_contig25007.6812.1|Name=mRNA_H-paniculata_contig25007.6812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp VTDTEEPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSback to top mRNA from alignment at H-paniculata_contig25007:22..399- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig25007.6812.1 ID=mRNA_H-paniculata_contig25007.6812.1|Name=mRNA_H-paniculata_contig25007.6812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig25007:22..399- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig25007:22..399- >mRNA_H-paniculata_contig25007.6812.1 ID=mRNA_H-paniculata_contig25007.6812.1|Name=mRNA_H-paniculata_contig25007.6812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig25007:22..399- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |