prot_H-paniculata_contig25007.6812.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig25007.6812.1
Unique Nameprot_H-paniculata_contig25007.6812.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length126
Homology
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A2K3KVU7_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KVU7_TRIPR)

HSP 1 Score: 94.7 bits (234), Expect = 1.020e-21
Identity = 44/125 (35.20%), Postives = 76/125 (60.80%), Query Frame = 0
Query:    1 VTDTEEPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 125
            V +T E P+ +S+  KL    +W +A+ VE E ++N   W  + ++  G N +  +W++  K +E+G + K K RLVA+G++Q+H +D+ +VFAP      ++ +IA A    W ++QL+VK AF
Sbjct:   78 VMNTNEDPITYSEAAKLD---VWKQAMDVEMESIKNNDTWE-LTTLPTGCNAIGVKWIYKTKYNEKGEIDKYKARLVAKGYTQKHGIDYKEVFAPVARWDTIRAIIAFAANKGWNIFQLNVKSAF 198          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A5A7SSH2_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SSH2_CUCME)

HSP 1 Score: 95.9 bits (237), Expect = 2.680e-21
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 0
Query:    8 PVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 125
            P+ F D+ +  +   W  A+  E + +E  K WT ++ +  G+  +  +WV+  K +E G V K K RLVA+G+SQQH +D+ +VFAP      ++M++A+A + DW ++QLDVK AF
Sbjct:  112 PICFEDVVQNEN---WRLAMDNEIKSIEKNKTWTLIE-LPSGAKRIGVKWVYKTKYNEHGKVDKNKARLVAKGYSQQHEIDYTKVFAPVARMDTIRMIVALAAQKDWKIFQLDVKSAF 225          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A0L9TUK8_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9TUK8_PHAAN)

HSP 1 Score: 96.7 bits (239), Expect = 8.920e-21
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 0
Query:   15 KKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 125
            K+ +    W EA+  E + +E  K W   D+   G   +  +WVF  K++E GN+ K K RLVA+G+SQQ+ VD+ +VFAP      V++++A+A ++ W ++QLDVK AF
Sbjct:  840 KEASQSIKWREAMNAEIQAIEKNKTWELTDAPT-GITPIGVKWVFKTKLNEHGNIEKHKARLVAKGYSQQYGVDYTEVFAPVARLDTVRVLLAIAAQHKWEVFQLDVKSAF 949          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A5B7B5N1_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B5N1_DAVIN)

HSP 1 Score: 90.5 bits (223), Expect = 1.270e-20
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 0
Query:   11 FSDIKKLTHK-----TLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 125
            FSD   +T K     + W +A+  E E +E    W   + + KG N +  +WV+  K+ + G V K K RLVA+G+ Q+  VD+ +VFAP      +++VIA+A +N W ++Q+DVK AF
Sbjct:   28 FSDCDPVTFKEAVKESKWRKAMDTEIEAIERNNTWELTE-LPKGQNTIGVKWVYKTKLKKTGEVDKYKARLVAKGYKQEFGVDYKEVFAPVARHDTIRLVIALAAQNSWLIFQMDVKSAF 146          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A445FKH7_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FKH7_GLYSO)

HSP 1 Score: 95.9 bits (237), Expect = 1.660e-20
Identity = 46/122 (37.70%), Postives = 75/122 (61.48%), Query Frame = 0
Query:    4 TEEPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 125
            TE+ P+ F    K      W +A+  E E +E  K W  +  + KG   +  +WVF  K++E+G V K K RLVA+G++QQ+ V++ +VFAP      +++++A+A +N+W ++QLDVK AF
Sbjct:  741 TEDDPLTFEQAVK---SKKWRDAMMAEIESIEKNKTWE-LTILPKGVKPIGVKWVFKTKLNEKGEVDKYKARLVAKGYAQQYGVNYTEVFAPVARLDTIRLILALAAQNNWDVFQLDVKSAF 858          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A2K3MC83_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MC83_TRIPR)

HSP 1 Score: 92.8 bits (229), Expect = 2.200e-20
Identity = 44/120 (36.67%), Postives = 75/120 (62.50%), Query Frame = 0
Query:    6 EPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 125
            E P+ ++D  K  H+ +W +A+  E E +E+   W  +  +  G+  +  +WV+  K +E+G + K K RLVA+G+SQQH +D+ +VFAP      ++ ++A+A  N+W ++QLDVK AF
Sbjct:  122 EDPITYNDAAK--HE-VWKKAMDTEIEAIESNDTWE-LTHLPTGAKKIGVKWVYKTKYNEEGKIEKHKARLVAKGYSQQHGIDYNEVFAPVARWDTIRTILAIAATNNWYVFQLDVKSAF 237          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A6J1EPQ0_CUCMO (uncharacterized protein LOC111436713 n=1 Tax=Cucurbita moschata TaxID=3662 RepID=A0A6J1EPQ0_CUCMO)

HSP 1 Score: 89.7 bits (221), Expect = 2.290e-20
Identity = 43/122 (35.25%), Postives = 72/122 (59.02%), Query Frame = 0
Query:    1 VTDTEEPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVK 122
            +T T +P    +  ++    + W  A+  + E +E  + W  + ++ KG   +  +WVF  K++E G V K K RLVA+G++QQH +D+ +VFAP      ++M+IA+A  N W ++QLDVK
Sbjct:   22 LTSTTDP----TTFEEAVQSSKWRAAIDFKIEAIERNETWE-LTNLPKGMKKIGVKWVFKTKLNENGEVDKYKARLVAKGYAQQHGIDYTEVFAPMARWGTIRMIIALAAWNSWNVYQLDVK 138          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A2K3MSV4_TRIPR (Copia-type polyprotein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MSV4_TRIPR)

HSP 1 Score: 95.1 bits (235), Expect = 3.090e-20
Identity = 42/122 (34.43%), Postives = 75/122 (61.48%), Query Frame = 0
Query:    4 TEEPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 125
            TE+ P+ F + +K      W +A++ E E +E  K W  +  +  G   +  +W++  K++E G + K K RLVA+G++QQ+ VD+ +VFAP      +++++A+A ++ W ++QLDVK AF
Sbjct:  832 TEDDPLSFEEARK---SNKWRDAMKAEIESIEKNKTWE-LTILPNGIKPIGVKWIYKTKLNENGQIDKYKARLVAKGYAQQYGVDYTEVFAPVARLDTIRLILALAAQHSWDVFQLDVKSAF 949          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A392MKZ8_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MKZ8_9FABA)

HSP 1 Score: 94.4 bits (233), Expect = 3.250e-20
Identity = 42/120 (35.00%), Postives = 76/120 (63.33%), Query Frame = 0
Query:    6 EPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 125
            + P  F++++K     +W +A+  E E +EN   W ++ ++  G+N +  +W+F  K +E+G + K K RLV +G+SQ+H VD+ +VFAP      ++ ++A+A + +W ++QLDVK AF
Sbjct:   48 DDPKNFAEVEKFE---VWRKAMDQEMESIENSNTW-HLTTLPDGANAIGVKWIFKTKYNEKGEIEKHKARLVDKGYSQKHGVDYNEVFAPVAXWDTIRAILALAAKENWKVFQLDVKSAF 163          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A151SRC1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SRC1_CAJCA)

HSP 1 Score: 92.8 bits (229), Expect = 3.260e-20
Identity = 42/103 (40.78%), Postives = 68/103 (66.02%), Query Frame = 0
Query:   23 WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 125
            W EA+ +E + +E  K W   D+  KG   +  +WVF  K++E+G+V K K RLV +G+SQQ+ VD+ +VFAP      V++++A+A ++ W +++LDVK AF
Sbjct:  185 WREAMNMEIQAIERNKTWELTDAP-KGVTPIGVKWVFKTKLNERGHVEKHKARLVEKGYSQQYGVDYTEVFAPVARLDTVRVLLALAAQHRWEVFELDVKSAF 286          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K3KVU7_TRIPR1.020e-2135.20Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A5A7SSH2_CUCME2.680e-2138.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A0L9TUK8_PHAAN8.920e-2139.64Uncharacterized protein n=1 Tax=Phaseolus angulari... [more]
A0A5B7B5N1_DAVIN1.270e-2037.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A445FKH7_GLYSO1.660e-2037.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3MC83_TRIPR2.200e-2036.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A6J1EPQ0_CUCMO2.290e-2035.25uncharacterized protein LOC111436713 n=1 Tax=Cucur... [more]
A0A2K3MSV4_TRIPR3.090e-2034.43Copia-type polyprotein n=1 Tax=Trifolium pratense ... [more]
A0A392MKZ8_9FABA3.250e-2035.00Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A151SRC1_CAJCA3.260e-2040.78Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 39..125
e-value: 3.7E-18
score: 66.1
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 19..125
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 19..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25007contigH-paniculata_contig25007:22..399 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25007.6812.1mRNA_H-paniculata_contig25007.6812.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig25007 22..399 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig25007.6812.1 ID=prot_H-paniculata_contig25007.6812.1|Name=mRNA_H-paniculata_contig25007.6812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
VTDTEEPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGS
NVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAF
GVKMVIAVAVENDWGMWQLDVKQAFS
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like