mRNA_H-paniculata_contig25007.6812.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25007.6812.1
Unique NamemRNA_H-paniculata_contig25007.6812.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A5A7SSH2_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SSH2_CUCME)

HSP 1 Score: 95.9 bits (237), Expect = 2.680e-21
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   22 PVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
            P+ F D+ +  +   W  A+  E + +E  K WT ++ +  G+  +  +WV+  K +E G V K K RLVA+G+SQQH +D+ +VFAP      ++M++A+A + DW ++QLDVK AF
Sbjct:  112 PICFEDVVQNEN---WRLAMDNEIKSIEKNKTWTLIE-LPSGAKRIGVKWVYKTKYNEHGKVDKNKARLVAKGYSQQHEIDYTKVFAPVARMDTIRMIVALAAQKDWKIFQLDVKSAF 225          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A0L9TUK8_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9TUK8_PHAAN)

HSP 1 Score: 96.7 bits (239), Expect = 8.920e-21
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   43 KKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
            K+ +    W EA+  E + +E  K W   D+   G   +  +WVF  K++E GN+ K K RLVA+G+SQQ+ VD+ +VFAP      V++++A+A ++ W ++QLDVK AF
Sbjct:  840 KEASQSIKWREAMNAEIQAIEKNKTWELTDAPT-GITPIGVKWVFKTKLNEHGNIEKHKARLVAKGYSQQYGVDYTEVFAPVARLDTVRVLLAIAAQHKWEVFQLDVKSAF 949          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A5B7B5N1_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B5N1_DAVIN)

HSP 1 Score: 90.5 bits (223), Expect = 1.270e-20
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:   31 FSDIKKLTHK-----TLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
            FSD   +T K     + W +A+  E E +E    W   + + KG N +  +WV+  K+ + G V K K RLVA+G+ Q+  VD+ +VFAP      +++VIA+A +N W ++Q+DVK AF
Sbjct:   28 FSDCDPVTFKEAVKESKWRKAMDTEIEAIERNNTWELTE-LPKGQNTIGVKWVYKTKLKKTGEVDKYKARLVAKGYKQEFGVDYKEVFAPVARHDTIRLVIALAAQNSWLIFQMDVKSAF 146          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A445FKH7_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FKH7_GLYSO)

HSP 1 Score: 95.9 bits (237), Expect = 1.660e-20
Identity = 46/122 (37.70%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   10 TEEPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
            TE+ P+ F    K      W +A+  E E +E  K W  +  + KG   +  +WVF  K++E+G V K K RLVA+G++QQ+ V++ +VFAP      +++++A+A +N+W ++QLDVK AF
Sbjct:  741 TEDDPLTFEQAVK---SKKWRDAMMAEIESIEKNKTWE-LTILPKGVKPIGVKWVFKTKLNEKGEVDKYKARLVAKGYAQQYGVNYTEVFAPVARLDTIRLILALAAQNNWDVFQLDVKSAF 858          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A2K3MSV4_TRIPR (Copia-type polyprotein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MSV4_TRIPR)

HSP 1 Score: 95.1 bits (235), Expect = 3.090e-20
Identity = 42/122 (34.43%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   10 TEEPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
            TE+ P+ F + +K      W +A++ E E +E  K W  +  +  G   +  +W++  K++E G + K K RLVA+G++QQ+ VD+ +VFAP      +++++A+A ++ W ++QLDVK AF
Sbjct:  832 TEDDPLSFEEARK---SNKWRDAMKAEIESIEKNKTWE-LTILPNGIKPIGVKWIYKTKLNENGQIDKYKARLVAKGYAQQYGVDYTEVFAPVARLDTIRLILALAAQHSWDVFQLDVKSAF 949          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A392MKZ8_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MKZ8_9FABA)

HSP 1 Score: 94.4 bits (233), Expect = 3.250e-20
Identity = 42/120 (35.00%), Postives = 76/120 (63.33%), Query Frame = 1
Query:   16 EPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
            + P  F++++K     +W +A+  E E +EN   W ++ ++  G+N +  +W+F  K +E+G + K K RLV +G+SQ+H VD+ +VFAP      ++ ++A+A + +W ++QLDVK AF
Sbjct:   48 DDPKNFAEVEKFE---VWRKAMDQEMESIENSNTW-HLTTLPDGANAIGVKWIFKTKYNEKGEIEKHKARLVDKGYSQKHGVDYNEVFAPVAXWDTIRAILALAAKENWKVFQLDVKSAF 163          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A151SRC1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SRC1_CAJCA)

HSP 1 Score: 92.8 bits (229), Expect = 3.260e-20
Identity = 42/103 (40.78%), Postives = 68/103 (66.02%), Query Frame = 1
Query:   67 WNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
            W EA+ +E + +E  K W   D+  KG   +  +WVF  K++E+G+V K K RLV +G+SQQ+ VD+ +VFAP      V++++A+A ++ W +++LDVK AF
Sbjct:  185 WREAMNMEIQAIERNKTWELTDAP-KGVTPIGVKWVFKTKLNERGHVEKHKARLVEKGYSQQYGVDYTEVFAPVARLDTVRVLLALAAQHRWEVFELDVKSAF 286          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A4Y1RBF6_PRUDU (ADP glucose pyrophosphorylase large subunit 1 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RBF6_PRUDU)

HSP 1 Score: 94.4 bits (233), Expect = 5.610e-20
Identity = 44/118 (37.29%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   22 PVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
            P+ +++  K   +  W EA+  E + +E  + W   D + KG   +  +WVF  K++E+G V K K RLVA+G+ Q+H +D+ +VFAP      +++VI++A +N W ++QLDVK AF
Sbjct:  404 PITYTEAVK---EEKWREAMDNEIKSIEKNQTWELTD-LPKGKQTIGVKWVFRTKLNEKGEVDKHKARLVAKGYKQKHGIDYKEVFAPVARHDTIRLVISLAAQNSWQIFQLDVKSAF 517          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A4Y1R4M3_PRUDU (ADP glucose pyrophosphorylase large subunit 1 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R4M3_PRUDU)

HSP 1 Score: 94.4 bits (233), Expect = 5.750e-20
Identity = 44/118 (37.29%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   22 PVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
            P+ +++  K   +  W EA+  E + +E  + W   D + KG   +  +WVF  K++E+G V K K RLVA+G+ Q+H +D+ +VFAP      +++VI++A +N W ++QLDVK AF
Sbjct:  846 PITYTEAVK---EEKWREAMDNEIKSIEKNQTWELTD-LPKGKQTIGVKWVFRTKLNEKGEVDKHKARLVAKGYKQKHGIDYKEVFAPVARHDTIRLVISLAAQNSWQIFQLDVKSAF 959          
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Match: A0A1J3E602_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3E602_NOCCA)

HSP 1 Score: 92.4 bits (228), Expect = 6.520e-20
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   61 TLWNEAVRVEFEGLENLKAWTYVDSVRKGSNVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAFGVKMVIAVAVENDWGMWQLDVKQAF 375
            T+W EAV  E + +E    W   D + KG   V+++WVF  K    G + + K RLVARGF+Q +  D+L  FAP      V++V+A+A   DW MWQ+DVK AF
Sbjct:  215 TVWVEAVEDETQAMERNHTWDEAD-LPKGKRAVTSKWVFTIKYLRTGEIERHKARLVARGFTQTYGQDYLDTFAPVAKLHTVRVVLALAANLDWDMWQMDVKNAF 318          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25007.6812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A7SSH2_CUCME2.680e-2138.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A0L9TUK8_PHAAN8.920e-2139.64Uncharacterized protein n=1 Tax=Phaseolus angulari... [more]
A0A5B7B5N1_DAVIN1.270e-2037.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A445FKH7_GLYSO1.660e-2037.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3MSV4_TRIPR3.090e-2034.43Copia-type polyprotein n=1 Tax=Trifolium pratense ... [more]
A0A392MKZ8_9FABA3.250e-2035.00Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A151SRC1_CAJCA3.260e-2040.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1RBF6_PRUDU5.610e-2037.29ADP glucose pyrophosphorylase large subunit 1 n=1 ... [more]
A0A4Y1R4M3_PRUDU5.750e-2037.29ADP glucose pyrophosphorylase large subunit 1 n=1 ... [more]
A0A1J3E602_NOCCA6.520e-2042.86Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25007contigH-paniculata_contig25007:22..399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.0
Seed ortholog evalue2.1e-16
Seed eggNOG ortholog15368.BRADI0007S00200.2
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3INI6@38820,3M96M@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929735.5538762-CDS-H-paniculata_contig25007:21..3991622929735.5538762-CDS-H-paniculata_contig25007:21..399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25007 22..399 -
1691480988.6172986-CDS-H-paniculata_contig25007:21..3991691480988.6172986-CDS-H-paniculata_contig25007:21..399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25007 22..399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25007.6812.1prot_H-paniculata_contig25007.6812.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25007 22..399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25007.6812.1

>prot_H-paniculata_contig25007.6812.1 ID=prot_H-paniculata_contig25007.6812.1|Name=mRNA_H-paniculata_contig25007.6812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
VTDTEEPPVRFSDIKKLTHKTLWNEAVRVEFEGLENLKAWTYVDSVRKGS
NVVSARWVFVWKIDEQGNVTKPKVRLVARGFSQQHNVDFLQVFAPTVAAF
GVKMVIAVAVENDWGMWQLDVKQAFS
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mRNA from alignment at H-paniculata_contig25007:22..399-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25007.6812.1 ID=mRNA_H-paniculata_contig25007.6812.1|Name=mRNA_H-paniculata_contig25007.6812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig25007:22..399- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACTGACACAGAGGAGCCCCCTGTTCGTTTTTCAGACATCAAGAAGCT GACACATAAAACGTTGTGGAATGAGGCAGTCAGAGTAGAGTTTGAGGGCT TGGAAAATCTCAAAGCTTGGACTTATGTAGACAGTGTGCGGAAAGGTTCC AATGTTGTCAGTGCGAGATGGGTATTTGTATGGAAAATTGATGAGCAGGG GAACGTTACAAAGCCAAAGGTAAGGCTTGTAGCTCGAGGGTTTAGCCAGC AACACAACGTTGATTTTCTCCAAGTGTTTGCTCCTACGGTAGCCGCTTTC GGTGTGAAGATGGTAATTGCTGTTGCTGTCGAAAACGACTGGGGAATGTG GCAACTTGATGTAAAACAGGCTTTTAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig25007:22..399-

>mRNA_H-paniculata_contig25007.6812.1 ID=mRNA_H-paniculata_contig25007.6812.1|Name=mRNA_H-paniculata_contig25007.6812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig25007:22..399- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACTGACACAGAGGAGCCCCCTGTTCGTTTTTCAGACATCAAGAAGCT
GACACATAAAACGTTGTGGAATGAGGCAGTCAGAGTAGAGTTTGAGGGCT
TGGAAAATCTCAAAGCTTGGACTTATGTAGACAGTGTGCGGAAAGGTTCC
AATGTTGTCAGTGCGAGATGGGTATTTGTATGGAAAATTGATGAGCAGGG
GAACGTTACAAAGCCAAAGGTAAGGCTTGTAGCTCGAGGGTTTAGCCAGC
AACACAACGTTGATTTTCTCCAAGTGTTTGCTCCTACGGTAGCCGCTTTC
GGTGTGAAGATGGTAATTGCTGTTGCTGTCGAAAACGACTGGGGAATGTG
GCAACTTGATGTAAAACAGGCTTTTAGTGTTACTGACACAGAGGAGCCCC
CTGTTCGTTTTTCAGACATCAAGAAGCTGACACATAAAACGTTGTGGAAT
GAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAAAATCTCAAAGCTTGGAC
TTATGTAGACAGTGTGCGGAAAGGTTCCAATGTTGTCAGTGCGAGATGGG
TATTTGTATGGAAAATTGATGAGCAGGGGAACGTTACAAAGCCAAAGGTA
AGGCTTGTAGCTCGAGGGTTTAGCCAGCAACACAACGTTGATTTTCTCCA
AGTGTTTGCTCCTACGGTAGCCGCTTTCGGTGTGAAGATGGTAATTGCTG
TTGCTGTCGAAAACGACTGGGGAATGTGGCAACTTGATGTAAAACAGGCT
TTTAGT
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