mRNA_H-paniculata_contig23353.6297.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23353.6297.1
Unique NamemRNA_H-paniculata_contig23353.6297.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: A0A835Z724_9STRA (mTERF-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z724_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.440e-34
Identity = 59/84 (70.24%), Postives = 77/84 (91.67%), Query Frame = 1
Query:    1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEFKQAYLKNR 252
            +M++LV +MGLSVYDVLTFPAYFSYPL+++IEPRTEFL +RRRP+ +VGLN+AL SGD+DFA+K+AKVRP++Y  FK AY+K+R
Sbjct:  279 KMDYLVAMMGLSVYDVLTFPAYFSYPLESIIEPRTEFLKLRRRPIAVVGLNMALTSGDADFAKKIAKVRPELYASFKAAYMKHR 362          
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: D7FXW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW7_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.120e-34
Identity = 64/88 (72.73%), Postives = 76/88 (86.36%), Query Frame = 1
Query:    1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEFKQAYLKNRCVAR 264
            +M++LVE MGLSVYDVLTFPAYFSYPL TVIEPRTEFL+IR RP+TLVGLNIAL  GD+DFARKVA+V+P VY +FK+AY+  R   +
Sbjct:  528 KMDYLVEKMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLAIRGRPITLVGLNIALHQGDADFARKVARVQPRVYQDFKKAYINKRAAVK 615          
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: A0A6H5KUV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV8_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.700e-34
Identity = 64/88 (72.73%), Postives = 76/88 (86.36%), Query Frame = 1
Query:    1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEFKQAYLKNRCVAR 264
            +M++LVE MGLSVYDVLTFPAYFSYPL TVIEPRTEFL+IR RP+TLVGLNIAL  GD+DFARKVA+V+P VY +FK+AY+  R   +
Sbjct:  988 KMDYLVEKMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLAIRGRPITLVGLNIALHQGDADFARKVARVQPRVYQDFKKAYINKRAAVK 1075          
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: R7Q6P9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6P9_CHOCR)

HSP 1 Score: 82.8 bits (203), Expect = 1.720e-16
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEFKQAYLKNRCVAREKAAL 279
            +M ++ + +GLS YD+LTFP YFSY  +  IEPRT+FL  + R VT  GLN+AL   D DF  +VAKV    Y  FK A+L  R    EKAA+
Sbjct:  383 KMEYIEQELGLSSYDILTFPGYFSYSFEKCIEPRTKFLQAKGRSVTESGLNMALGLKDEDFCVRVAKVPISQYYAFKAAFLLGR--KNEKAAV 473          
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: A0A7S2Y096_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y096_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.040e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEFKQAYLK 246
            ++ +  E M L + ++  FPA+FSYPL+T I+ RTEFL+I    ++ VGL   L   D DF++KV KV P  +  FK +YLK
Sbjct:  241 KLEYFTEYMDLEIEELERFPAFFSYPLET-IQTRTEFLAILGNSISGVGLRRVLTPSDDDFSKKVVKVNPKFFQLFKNSYLK 321          
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: F0Y3H4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3H4_AURAN)

HSP 1 Score: 67.4 bits (163), Expect = 4.510e-11
Identity = 36/72 (50.00%), Postives = 42/72 (58.33%), Query Frame = 1
Query:   28 GLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEFKQAYL 243
             LSVYDV+ FPAYFSYPL  VI+PRT FL     P+T   L      GD +FA +V  V P  Y  FK+  L
Sbjct:  410 ALSVYDVVRFPAYFSYPLDGVIKPRTAFLKQLGVPITTFPLQALFTPGDKEFASRVLGVDPKRYAAFKKDLL 481          
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: A0A5J4Z0R3_PORPP (Transcription termination factor MTEF1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0R3_PORPP)

HSP 1 Score: 55.8 bits (133), Expect = 5.280e-7
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 1
Query:    1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEF 228
            ++++L   +GLS +D+L FPAYFSY L   I PRT FL      +   GL+ A+   D DF R  A+V  + Y  F
Sbjct:  533 KVDYLENRLGLSSFDLLIFPAYFSYSLSDRIVPRTLFLKRLGISIADAGLSNAISLTDEDFCRWTARVPREEYDSF 608          
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: A0A6U2R904_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2R904_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.300e-7
Identity = 29/67 (43.28%), Postives = 37/67 (55.22%), Query Frame = 1
Query:   28 GLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEF 228
            G   +DV+ FPA FSYP   +I  R E+L  R  P   VGL+  L SGD+DFAR V     + +  F
Sbjct:  574 GFDYFDVVRFPATFSYPFDRIIVTRFEYLKTRNIPPKAVGLDKILSSGDTDFARIVDNDSGEAFLAF 640          
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: B8CBG4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBG4_THAPS)

HSP 1 Score: 53.9 bits (128), Expect = 2.530e-6
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    7 NFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFL-SIRRRPVTLVGLNIALQSGDSDFARKVA 198
            NFL EV     ++V+ FPAYFSYPL+ VI+ R  +L   +  P+ L  ++  L+ GD DFA ++A
Sbjct:  608 NFLREVCQFDYFEVVRFPAYFSYPLERVIKMRYSYLRDCKGIPIQLARVDDVLRFGDRDFATEIA 672          
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: A0A7S3JTN4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTN4_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.190e-5
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1
Query:    1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPV 135
            +M F V+   LS+YDV+ FPAYFSYPL  VIEPR  FL  R RP+
Sbjct:  410 KMTFAVQ-NALSIYDVVRFPAYFSYPLDQVIEPRAAFLQ-RHRPI 452          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835Z724_9STRA1.440e-3470.24mTERF-domain-containing protein n=1 Tax=Tribonema ... [more]
D7FXW7_ECTSI2.120e-3472.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUV8_9PHAE2.700e-3472.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
R7Q6P9_CHOCR1.720e-1649.46Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2Y096_9STRA2.040e-1243.90Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y3H4_AURAN4.510e-1150.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A5J4Z0R3_PORPP5.280e-740.79Transcription termination factor MTEF1, chloroplas... [more]
A0A6U2R904_9STRA5.300e-743.28Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8CBG4_THAPS2.530e-643.08Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3JTN4_9STRA1.190e-560.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23353contigH-paniculata_contig23353:2741..3829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue7.7e-29
Seed eggNOG ortholog2880.D7FXW7
KEGG koko:K15032
Hectar predicted targeting categoryother localisation
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons2
Model size279
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23353.6297.1prot_H-paniculata_contig23353.6297.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23353 2741..3826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.8789253-CDS-H-paniculata_contig23353:2740..28971622929661.8789253-CDS-H-paniculata_contig23353:2740..2897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23353 2741..2897 -
1691480956.2843704-CDS-H-paniculata_contig23353:2740..28971691480956.2843704-CDS-H-paniculata_contig23353:2740..2897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23353 2741..2897 -
1622929661.8947496-CDS-H-paniculata_contig23353:3707..38261622929661.8947496-CDS-H-paniculata_contig23353:3707..3826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23353 3708..3826 -
1691480956.2938063-CDS-H-paniculata_contig23353:3707..38261691480956.2938063-CDS-H-paniculata_contig23353:3707..3826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23353 3708..3826 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.909998-UTR-H-paniculata_contig23353:3826..38291622929661.909998-UTR-H-paniculata_contig23353:3826..3829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23353 3827..3829 -
1691480956.3024306-UTR-H-paniculata_contig23353:3826..38291691480956.3024306-UTR-H-paniculata_contig23353:3826..3829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23353 3827..3829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23353.6297.1

>prot_H-paniculata_contig23353.6297.1 ID=prot_H-paniculata_contig23353.6297.1|Name=mRNA_H-paniculata_contig23353.6297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLN
IALQSGDSDFARKVAKVRPDVYTEFKQAYLKNRCVAREKAAL
back to top

mRNA from alignment at H-paniculata_contig23353:2741..3829-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23353.6297.1 ID=mRNA_H-paniculata_contig23353.6297.1|Name=mRNA_H-paniculata_contig23353.6297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1089bp|location=Sequence derived from alignment at H-paniculata_contig23353:2741..3829- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATGAACTTCTTGGTGGAGGTGATGGGACTGAGCGTTTACGATGTGCT TACATTCCCGGCGTACTTCTCCTACCCATTGCAAACCGTCATCGAGCCCC GCACAGAATTTCTCAGCATCAGGTACCTGGCCGTAGACGATTGGTCCTGT TTTTTTTTTGTTTTTTTTTCAAATTGAAACGCGGTCTTTCTCGAGAACGC AGGCAGGTAGGTCTTTTTTGGATGCCGCAGCTCTTGGAGAGAGGGCATTG ACAATGCGTCCTTGAGAGAGGGTGGAGAAATGTTTCGTGTAATGAGGCGA ACTCAGAGGATTTTTTGTTTTCTTTGTTTTGGTTTTTCTTCGCTCTTTGT TTTAATCAACGCGTGTTTCTTTATTTTGTGCTCAGCGTCTTTGTGTGTCT GTGTGCCTATTTTTTTTCAAATAACATGTGTATGTTTATGTCCGTGTTTT TCCGCTTTGTGCATGCACATTTAGTTTCTTTTTATTTAATTGACTCTTTA CAAGACGTTTTTGTTTTTGTCTTGTTTTTTCTTTCAAACAGTGTCTTGGC TACTTACTAAATGCCTTTAGCCTCGCTCTTTATTTTGTTTCGTTCTATGA GAACACGATGCTCCCGGGAGCGACTGGCTCTCGAGGGGACACCGCCTGCT CTATGCGGGTCGGTTCTAGGTCTTGGGATGTAGTGCGGAGCAAGCACTTG GGTTTTGTTCTGTCGTAGATGGACTGTCCATCCAGGGTCAGACACAGCTA GAAAGCTGTTCCGAGAAAGGGACGAAGTACCATTAATCGTTATTCAGGGG GCCTGGGTTCAGGAACCCTCGGAATATCAGGAACGTGCTCTCCACATGTA CTGAACTTTTTTTTTTTGGTCCACTTGTTATCGCGTCTTGTTTTTTCTTT TTTTCTTTTGGTTGATTCCTCGCTCAAAAAAGGCGGCGACCCGTGACCCT GGTCGGTCTCAATATCGCCTTGCAGAGCGGAGACAGCGACTTTGCCCGCA AGGTGGCCAAGGTTCGCCCCGATGTCTACACCGAATTCAAGCAGGCTTAC CTCAAGAACAGGTGCGTCGCACGCGAGAAGGCAGCTTTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig23353:2741..3829-

>mRNA_H-paniculata_contig23353.6297.1 ID=mRNA_H-paniculata_contig23353.6297.1|Name=mRNA_H-paniculata_contig23353.6297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig23353:2741..3829- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACTTCTTGGTGGAGGTGATGGGACTGAGCGTTTACGATGTGCTTAC
ATTCCCGGCGTACTTCTCCTACCCATTGCAAACCGTCATCGAGCCCCGCA
CAGAATTTCTCAGCATCAGATGAACTTCTTGGTGGAGGTGATGGGACTGA
GCGTTTACGATGTGCTTACATTCCCGGCGTACTTCTCCTACCCATTGCAA
ACCGTCATCGAGCCCCGCACAGAATTTCTCAGCATCAGGCGGCGACCCGT
GACCCTGGTCGGTCTCAATATCGCCTTGCAGAGCGGAGACAGCGACTTTG
CCCGCAAGGTGGCCAAGGTTCGCCCCGATGTCTACACCGAATTCAAGCAG
GCTTACCTCAAGAACAGGTGCGTCGCACGCGAGAAGGCAGCTTTAGCGGC
GACCCGTGACCCTGGTCGGTCTCAATATCGCCTTGCAGAGCGGAGACAGC
GACTTTGCCCGCAAGGTGGCCAAGGTTCGCCCCGATGTCTACACCGAATT
CAAGCAGGCTTACCTCAAGAACAGGTGCGTCGCACGCGAGAAGGCAGCTT
TA
back to top