mRNA_H-paniculata_contig23353.6297.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: A0A835Z724_9STRA (mTERF-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z724_9STRA) HSP 1 Score: 131 bits (330), Expect = 1.440e-34 Identity = 59/84 (70.24%), Postives = 77/84 (91.67%), Query Frame = 1
Query: 1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEFKQAYLKNR 252
+M++LV +MGLSVYDVLTFPAYFSYPL+++IEPRTEFL +RRRP+ +VGLN+AL SGD+DFA+K+AKVRP++Y FK AY+K+R
Sbjct: 279 KMDYLVAMMGLSVYDVLTFPAYFSYPLESIIEPRTEFLKLRRRPIAVVGLNMALTSGDADFAKKIAKVRPELYASFKAAYMKHR 362
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: D7FXW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW7_ECTSI) HSP 1 Score: 133 bits (335), Expect = 2.120e-34 Identity = 64/88 (72.73%), Postives = 76/88 (86.36%), Query Frame = 1
Query: 1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEFKQAYLKNRCVAR 264
+M++LVE MGLSVYDVLTFPAYFSYPL TVIEPRTEFL+IR RP+TLVGLNIAL GD+DFARKVA+V+P VY +FK+AY+ R +
Sbjct: 528 KMDYLVEKMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLAIRGRPITLVGLNIALHQGDADFARKVARVQPRVYQDFKKAYINKRAAVK 615
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: A0A6H5KUV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV8_9PHAE) HSP 1 Score: 133 bits (335), Expect = 2.700e-34 Identity = 64/88 (72.73%), Postives = 76/88 (86.36%), Query Frame = 1
Query: 1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEFKQAYLKNRCVAR 264
+M++LVE MGLSVYDVLTFPAYFSYPL TVIEPRTEFL+IR RP+TLVGLNIAL GD+DFARKVA+V+P VY +FK+AY+ R +
Sbjct: 988 KMDYLVEKMGLSVYDVLTFPAYFSYPLDTVIEPRTEFLAIRGRPITLVGLNIALHQGDADFARKVARVQPRVYQDFKKAYINKRAAVK 1075
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: R7Q6P9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6P9_CHOCR) HSP 1 Score: 82.8 bits (203), Expect = 1.720e-16 Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 1
Query: 1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEFKQAYLKNRCVAREKAAL 279
+M ++ + +GLS YD+LTFP YFSY + IEPRT+FL + R VT GLN+AL D DF +VAKV Y FK A+L R EKAA+
Sbjct: 383 KMEYIEQELGLSSYDILTFPGYFSYSFEKCIEPRTKFLQAKGRSVTESGLNMALGLKDEDFCVRVAKVPISQYYAFKAAFLLGR--KNEKAAV 473
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: A0A7S2Y096_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y096_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 2.040e-12 Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query: 1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEFKQAYLK 246
++ + E M L + ++ FPA+FSYPL+T I+ RTEFL+I ++ VGL L D DF++KV KV P + FK +YLK
Sbjct: 241 KLEYFTEYMDLEIEELERFPAFFSYPLET-IQTRTEFLAILGNSISGVGLRRVLTPSDDDFSKKVVKVNPKFFQLFKNSYLK 321
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: F0Y3H4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3H4_AURAN) HSP 1 Score: 67.4 bits (163), Expect = 4.510e-11 Identity = 36/72 (50.00%), Postives = 42/72 (58.33%), Query Frame = 1
Query: 28 GLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEFKQAYL 243
LSVYDV+ FPAYFSYPL VI+PRT FL P+T L GD +FA +V V P Y FK+ L
Sbjct: 410 ALSVYDVVRFPAYFSYPLDGVIKPRTAFLKQLGVPITTFPLQALFTPGDKEFASRVLGVDPKRYAAFKKDLL 481
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: A0A5J4Z0R3_PORPP (Transcription termination factor MTEF1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0R3_PORPP) HSP 1 Score: 55.8 bits (133), Expect = 5.280e-7 Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 1
Query: 1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEF 228
++++L +GLS +D+L FPAYFSY L I PRT FL + GL+ A+ D DF R A+V + Y F
Sbjct: 533 KVDYLENRLGLSSFDLLIFPAYFSYSLSDRIVPRTLFLKRLGISIADAGLSNAISLTDEDFCRWTARVPREEYDSF 608
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: A0A6U2R904_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2R904_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 5.300e-7 Identity = 29/67 (43.28%), Postives = 37/67 (55.22%), Query Frame = 1
Query: 28 GLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNIALQSGDSDFARKVAKVRPDVYTEF 228
G +DV+ FPA FSYP +I R E+L R P VGL+ L SGD+DFAR V + + F
Sbjct: 574 GFDYFDVVRFPATFSYPFDRIIVTRFEYLKTRNIPPKAVGLDKILSSGDTDFARIVDNDSGEAFLAF 640
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: B8CBG4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBG4_THAPS) HSP 1 Score: 53.9 bits (128), Expect = 2.530e-6 Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 7 NFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFL-SIRRRPVTLVGLNIALQSGDSDFARKVA 198
NFL EV ++V+ FPAYFSYPL+ VI+ R +L + P+ L ++ L+ GD DFA ++A
Sbjct: 608 NFLREVCQFDYFEVVRFPAYFSYPLERVIKMRYSYLRDCKGIPIQLARVDDVLRFGDRDFATEIA 672
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Match: A0A7S3JTN4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTN4_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 1.190e-5 Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1
Query: 1 QMNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPV 135
+M F V+ LS+YDV+ FPAYFSYPL VIEPR FL R RP+
Sbjct: 410 KMTFAVQ-NALSIYDVVRFPAYFSYPLDQVIEPRAAFLQ-RHRPI 452 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23353.6297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23353.6297.1 >prot_H-paniculata_contig23353.6297.1 ID=prot_H-paniculata_contig23353.6297.1|Name=mRNA_H-paniculata_contig23353.6297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp MNFLVEVMGLSVYDVLTFPAYFSYPLQTVIEPRTEFLSIRRRPVTLVGLNback to top mRNA from alignment at H-paniculata_contig23353:2741..3829- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23353.6297.1 ID=mRNA_H-paniculata_contig23353.6297.1|Name=mRNA_H-paniculata_contig23353.6297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1089bp|location=Sequence derived from alignment at H-paniculata_contig23353:2741..3829- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23353:2741..3829- >mRNA_H-paniculata_contig23353.6297.1 ID=mRNA_H-paniculata_contig23353.6297.1|Name=mRNA_H-paniculata_contig23353.6297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig23353:2741..3829- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |