prot_H-paniculata_contig22964.6153.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig22964.6153.1
Unique Nameprot_H-paniculata_contig22964.6153.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length59
Homology
BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: D7FV80_ECTSI (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV80_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.020e-31
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 0
Query:    1 MDGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFIT 58
            M+G GTRFEMELELMNCLASPEYLHYLAQGGYLDD AF+RFLEYLQYFKRPEYAKFIT
Sbjct:    1 MEGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFIT 58          
BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A6H5L203_9PHAE (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L203_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.630e-30
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0
Query:    1 MDGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFIT 58
            M+G GTRFEMELELMNCLASPEYLHYLAQ GYLDD AF+RFLEYLQYFKRPEYAKFIT
Sbjct:    1 MEGSGTRFEMELELMNCLASPEYLHYLAQSGYLDDRAFVRFLEYLQYFKRPEYAKFIT 58          
BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A7S3XZ41_HETAK (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ41_HETAK)

HSP 1 Score: 87.8 bits (216), Expect = 1.720e-20
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 0
Query:    1 MDGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFI 57
            +DG  +RFE+ELE + CL+SPEYLHYLAQ  Y +DPAF+ FL YLQY++RPEYAKFI
Sbjct:   40 LDGGHSRFEVELEFVQCLSSPEYLHYLAQNKYFEDPAFINFLHYLQYWRRPEYAKFI 96          
BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: D8SC37_SELML (Mediator of RNA polymerase II transcription subunit 31 (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SC37_SELML)

HSP 1 Score: 78.2 bits (191), Expect = 1.320e-17
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    1 MDGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFI 57
            +DG   RF +ELE + CLA+P Y+HYLAQ  Y DD AF+ +L+YLQY++RPEYAKFI
Sbjct:    9 VDGGRQRFLLELEFVQCLANPTYIHYLAQNRYFDDEAFVNYLKYLQYWRRPEYAKFI 65          
BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A176VRV6_MARPO (Mediator of RNA polymerase II transcription subunit 31 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VRV6_MARPO)

HSP 1 Score: 80.1 bits (196), Expect = 1.750e-17
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    2 DGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFIT 58
            DG   RFE+ELE + CLA+P Y+HYLAQ  Y DD AF+ +L+YLQY++RPEYAKFI 
Sbjct:   17 DGGRQRFELELEFVQCLANPTYIHYLAQNRYFDDEAFVGYLKYLQYWQRPEYAKFIV 73          
BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A835Z5G5_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.860e-17
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 0
Query:    7 RFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFI 57
            RFE+ELE + CLASPEYLH+LAQ  Y DDPAF+ FL+YL Y++RP+YAK++
Sbjct:   25 RFEVELEFVQCLASPEYLHFLAQQRYFDDPAFMAFLQYLTYWRRPQYAKYL 75          
BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A6G1LXD9_ORBOL (Mediator of RNA polymerase II transcription subunit 31 n=6 Tax=Orbiliaceae TaxID=47021 RepID=A0A6G1LXD9_ORBOL)

HSP 1 Score: 77.0 bits (188), Expect = 6.240e-17
Identity = 34/53 (64.15%), Postives = 45/53 (84.91%), Query Frame = 0
Query:    6 TRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFIT 58
            TRFE+ELE + CLA+P YL+YLAQG YL D AFL++LEYL Y+++PEY KF++
Sbjct:   11 TRFEVELEFVQCLANPFYLNYLAQGKYLQDDAFLQYLEYLDYWRQPEYVKFLS 63          
BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A6U6IBL1_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IBL1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.220e-16
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    7 RFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFIT 58
            RFE+ELE + CLASP YLH+LA  G L D +FL FLEYL+Y+ RPEYA+FIT
Sbjct:   33 RFELELEFVQCLASPAYLHHLATSGLLSDSSFLSFLEYLRYWSRPEYARFIT 84          
BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A4V1IX78_9FUNG (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4V1IX78_9FUNG)

HSP 1 Score: 73.6 bits (179), Expect = 2.010e-15
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 0
Query:    7 RFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFIT 58
            RFE+ELE +  LA+P YLHYLAQ  Y DDP F+ +LEYL Y+++PEYAKF+ 
Sbjct:   25 RFELELEFVQSLANPFYLHYLAQQDYFDDPCFVAYLEYLAYWRKPEYAKFVV 76          
BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A061DDR2_BABBI (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Babesia bigemina TaxID=5866 RepID=A0A061DDR2_BABBI)

HSP 1 Score: 73.6 bits (179), Expect = 2.280e-15
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0
Query:    7 RFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFI 57
            RFE ELE + CLA+P YLHYLA+ GY +D  F  ++ YLQYF+RPEY KFI
Sbjct:   29 RFEAELEFVQCLANPHYLHYLAKAGYFEDQRFRAYIVYLQYFRRPEYVKFI 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV80_ECTSI1.020e-3193.10Mediator of RNA polymerase II transcription subuni... [more]
A0A6H5L203_9PHAE1.630e-3091.38Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3XZ41_HETAK1.720e-2068.42Mediator of RNA polymerase II transcription subuni... [more]
D8SC37_SELML1.320e-1761.40Mediator of RNA polymerase II transcription subuni... [more]
A0A176VRV6_MARPO1.750e-1763.16Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z5G5_9STRA1.860e-1766.67Mediator of RNA polymerase II transcription subuni... [more]
A0A6G1LXD9_ORBOL6.240e-1764.15Mediator of RNA polymerase II transcription subuni... [more]
A0A6U6IBL1_9STRA3.220e-1667.31Mediator of RNA polymerase II transcription subuni... [more]
A0A4V1IX78_9FUNG2.010e-1561.54Mediator of RNA polymerase II transcription subuni... [more]
A0A061DDR2_BABBI2.280e-1562.75Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038089Mediator complex, subunit Med31 domain superfamilyGENE3D1.10.10.1340coord: 1..58
e-value: 6.9E-22
score: 78.8
IPR008831Mediator complex, subunit Med31PFAMPF05669Med31coord: 6..58
e-value: 2.2E-21
score: 75.7
IPR008831Mediator complex, subunit Med31PANTHERPTHR13186MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT SOH1coord: 6..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22964contigH-paniculata_contig22964:506..1159 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22964.6153.1mRNA_H-paniculata_contig22964.6153.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig22964 506..1162 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig22964.6153.1 ID=prot_H-paniculata_contig22964.6153.1|Name=mRNA_H-paniculata_contig22964.6153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MDGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKR
PEYAKFIT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038089Med31_sf
IPR008831Mediator_Med31