mRNA_H-paniculata_contig22964.6153.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22964.6153.1
Unique NamemRNA_H-paniculata_contig22964.6153.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: D7FV80_ECTSI (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV80_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.060e-31
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    4 MDGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFIT 177
            M+G GTRFEMELELMNCLASPEYLHYLAQGGYLDD AF+RFLEYLQYFKRPEYAKFIT
Sbjct:    1 MEGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFIT 58
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BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A6H5L203_9PHAE (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L203_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.700e-30
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    4 MDGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFIT 177
            M+G GTRFEMELELMNCLASPEYLHYLAQ GYLDD AF+RFLEYLQYFKRPEYAKFIT
Sbjct:    1 MEGSGTRFEMELELMNCLASPEYLHYLAQSGYLDDRAFVRFLEYLQYFKRPEYAKFIT 58
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BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A7S3XZ41_HETAK (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ41_HETAK)

HSP 1 Score: 87.8 bits (216), Expect = 1.790e-20
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    4 MDGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFI 174
            +DG  +RFE+ELE + CL+SPEYLHYLAQ  Y +DPAF+ FL YLQY++RPEYAKFI
Sbjct:   40 LDGGHSRFEVELEFVQCLSSPEYLHYLAQNKYFEDPAFINFLHYLQYWRRPEYAKFI 96
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BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: D8SC37_SELML (Mediator of RNA polymerase II transcription subunit 31 (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SC37_SELML)

HSP 1 Score: 79.0 bits (193), Expect = 6.830e-18
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 DMDGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFI 174
            ++DG   RF +ELE + CLA+P Y+HYLAQ  Y DD AF+ +L+YLQY++RPEYAKFI
Sbjct:    8 EVDGGRQRFLLELEFVQCLANPTYIHYLAQNRYFDDEAFVNYLKYLQYWRRPEYAKFI 65
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BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A176VRV6_MARPO (Mediator of RNA polymerase II transcription subunit 31 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VRV6_MARPO)

HSP 1 Score: 80.5 bits (197), Expect = 1.290e-17
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 DMDGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFIT 177
            + DG   RFE+ELE + CLA+P Y+HYLAQ  Y DD AF+ +L+YLQY++RPEYAKFI 
Sbjct:   15 ETDGGRQRFELELEFVQCLANPTYIHYLAQNRYFDDEAFVGYLKYLQYWQRPEYAKFIV 73
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BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A835Z5G5_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.940e-17
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   22 RFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFI 174
            RFE+ELE + CLASPEYLH+LAQ  Y DDPAF+ FL+YL Y++RP+YAK++
Sbjct:   25 RFEVELEFVQCLASPEYLHFLAQQRYFDDPAFMAFLQYLTYWRRPQYAKYL 75
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BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A6G1LXD9_ORBOL (Mediator of RNA polymerase II transcription subunit 31 n=6 Tax=Orbiliaceae TaxID=47021 RepID=A0A6G1LXD9_ORBOL)

HSP 1 Score: 77.0 bits (188), Expect = 6.500e-17
Identity = 34/53 (64.15%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:   19 TRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFIT 177
            TRFE+ELE + CLA+P YL+YLAQG YL D AFL++LEYL Y+++PEY KF++
Sbjct:   11 TRFEVELEFVQCLANPFYLNYLAQGKYLQDDAFLQYLEYLDYWRQPEYVKFLS 63
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BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A6U6IBL1_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IBL1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.360e-16
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   22 RFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFIT 177
            RFE+ELE + CLASP YLH+LA  G L D +FL FLEYL+Y+ RPEYA+FIT
Sbjct:   33 RFELELEFVQCLASPAYLHHLATSGLLSDSSFLSFLEYLRYWSRPEYARFIT 84
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BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: UPI0009009C9A (mediator of RNA polymerase II transcription subunit 31-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI0009009C9A)

HSP 1 Score: 72.8 bits (177), Expect = 1.400e-15
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 DMDGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFI 174
            D DG   RF +ELE + CLA+P Y+HYLAQ  Y +D AF+ +L Y QY++RPEY KFI
Sbjct:   19 DPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIEYLNYHQYWQRPEYIKFI 76
[Close]
BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Match: A0A5C7HAD1_9ROSI (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HAD1_9ROSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.690e-15
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 DMDGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKRPEYAKFI 174
            D D    RF +ELE + CLA+P Y+HYLAQ  Y +D AF+ +L+YLQY+KRPEY KFI
Sbjct:   16 DPDDGRQRFLLELEFVQCLANPNYIHYLAQNRYFEDEAFIGYLKYLQYWKRPEYVKFI 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22964.6153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV80_ECTSI1.060e-3193.10Mediator of RNA polymerase II transcription subuni... [more]
A0A6H5L203_9PHAE1.700e-3091.38Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3XZ41_HETAK1.790e-2068.42Mediator of RNA polymerase II transcription subuni... [more]
D8SC37_SELML6.830e-1860.34Mediator of RNA polymerase II transcription subuni... [more]
A0A176VRV6_MARPO1.290e-1761.02Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z5G5_9STRA1.940e-1766.67Mediator of RNA polymerase II transcription subuni... [more]
A0A6G1LXD9_ORBOL6.500e-1764.15Mediator of RNA polymerase II transcription subuni... [more]
A0A6U6IBL1_9STRA3.360e-1667.31Mediator of RNA polymerase II transcription subuni... [more]
UPI0009009C9A1.400e-1556.90mediator of RNA polymerase II transcription subuni... [more]
A0A5C7HAD1_9ROSI1.690e-1558.62Mediator of RNA polymerase II transcription subuni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22964contigH-paniculata_contig22964:506..1162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.2e-24
Seed eggNOG ortholog2880.D7FV80
Preferred nameMED31
KEGG koko:K15153,ko:K15446
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000428,GO:0000578,GO:0003002,GO:0003674,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007399,GO:0007406,GO:0008150,GO:0008152,GO:0008285,GO:0008595,GO:0009058,GO:0009059,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009891,GO:0009893,GO:0009948,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010721,GO:0016070,GO:0016567,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022008,GO:0030154,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035282,GO:0036211,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045595,GO:0045596,GO:0045935,GO:0046483,GO:0048145,GO:0048147,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051960,GO:0051961,GO:0055029,GO:0060173,GO:0060255,GO:0060284,GO:0061695,GO:0065007,GO:0070013,GO:0070647,GO:0070847,GO:0071704,GO:0072091,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1902692,GO:1903506,GO:1903508,GO:1990234,GO:2000026,GO:2000112,GO:2000177,GO:2000178,GO:2000647,GO:2001141
EggNOG free text desc.transcription, DNA-templated
EggNOG OGsCOG5088@1,KOG4086@2759
EC2.1.1.225
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko03021
Exons2
Model size180
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22964.6153.1prot_H-paniculata_contig22964.6153.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22964 506..1159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.7389305-CDS-H-paniculata_contig22964:505..6061622929642.7389305-CDS-H-paniculata_contig22964:505..606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22964 506..606 -
1691480948.0980294-CDS-H-paniculata_contig22964:505..6061691480948.0980294-CDS-H-paniculata_contig22964:505..606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22964 506..606 -
1622929642.759626-CDS-H-paniculata_contig22964:1083..11591622929642.759626-CDS-H-paniculata_contig22964:1083..1159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22964 1084..1159 -
1691480948.1107223-CDS-H-paniculata_contig22964:1083..11591691480948.1107223-CDS-H-paniculata_contig22964:1083..1159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22964 1084..1159 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.7722602-UTR-H-paniculata_contig22964:1159..11621622929642.7722602-UTR-H-paniculata_contig22964:1159..1162Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22964 1160..1162 -
1691480948.1231458-UTR-H-paniculata_contig22964:1159..11621691480948.1231458-UTR-H-paniculata_contig22964:1159..1162Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22964 1160..1162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22964.6153.1

>prot_H-paniculata_contig22964.6153.1 ID=prot_H-paniculata_contig22964.6153.1|Name=mRNA_H-paniculata_contig22964.6153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MDGVGTRFEMELELMNCLASPEYLHYLAQGGYLDDPAFLRFLEYLQYFKR
PEYAKFIT*
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mRNA from alignment at H-paniculata_contig22964:506..1162-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22964.6153.1 ID=mRNA_H-paniculata_contig22964.6153.1|Name=mRNA_H-paniculata_contig22964.6153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=657bp|location=Sequence derived from alignment at H-paniculata_contig22964:506..1162- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATATGGATGGAGTCGGGACGCGCTTCGAGATGGAGCTGGAGTTGATGAA
TTGCCTAGCTAGTCCGGAGTACCTTCACTGTGAGCCAGCCTTCTTGCCGA
ACATATTGCGCGATCTAAACCCATGGAGTTTGCGTACTTTCTTTCCTTAC
TGAATGGTTTTCACTTGCAGCCCTCTTTATATTTCGCGGTCTGTGTCCGA
GATGCGCTGATCATGATACTCCTGTTCATACCTAGCGTATGACATCACCA
TCCTTTCCTGTTTGTAGTACCTGTAGTACCACACCGACAATGGACGACGT
GCTGCCGCAAAGATATTCGGTAAGTATTGTAAGTTAGCTGTCTGTCTGTT
CACGTAACCCTGCCCACGTTTCTAAGGAATACGTATGCTACGGTTCGTTC
GAGCTCTTGTTGCCTTGCTGCGCCTCTGTGTTTTGAATTGGGATCTTTTT
TGTAAAGCTTCACTATCTGCTGCAATTTCCCAAAGCATGAGACGTTCTGC
CCAGCGTTGTTCAACTTTACTACTGCGACCTGCTCGTGTTGTGCACTTGT
GTCCAGACTTGGCCCAGGGCGGCTACCTCGATGATCCCGCGTTCTTGCGA
TTCTTGGAATATCTCCAGTACTTCAAGCGGCCAGAGTATGCCAAGTTCAT
CACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22964:506..1162-

>mRNA_H-paniculata_contig22964.6153.1 ID=mRNA_H-paniculata_contig22964.6153.1|Name=mRNA_H-paniculata_contig22964.6153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig22964:506..1162- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGGAGTCGGGACGCGCTTCGAGATGGAGCTGGAGTTGATGAATTG
CCTAGCTAGTCCGGAGTACCTTCACTATGGATGGAGTCGGGACGCGCTTC
GAGATGGAGCTGGAGTTGATGAATTGCCTAGCTAGTCCGGAGTACCTTCA
CTACTTGGCCCAGGGCGGCTACCTCGATGATCCCGCGTTCTTGCGATTCT
TGGAATATCTCCAGTACTTCAAGCGGCCAGAGTATGCCAAGTTCATCACG
TGAACTTGGCCCAGGGCGGCTACCTCGATGATCCCGCGTTCTTGCGATTC
TTGGAATATCTCCAGTACTTCAAGCGGCCAGAGTATGCCAAGTTCATCAC
GTGA
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